HEADER DNA BINDING PROTEIN/DNA 20-JUL-23 8TIQ TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE TITLE 3 COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH TITLE 4 BLUNT ENDS AND 3' TERMINAL PHOSPHATES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP* COMPND 4 CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-3'; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP* COMPND 10 AP*GP*GP*TP*CP*CP*GP*GP*GP*A)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K-12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ORUN,E.T.SHIELDS,C.K.SLAUGHTER,R.SHRESTHA,C.D.SNOW REVDAT 2 22-MAY-24 8TIQ 1 REMARK REVDAT 1 02-AUG-23 8TIQ 0 JRNL AUTH A.R.ORUN,A.VAJAPAYAJULA,S.DMYTRIW,E.T.SHIELDS,R.SHRESTHA, JRNL AUTH 2 C.D.SNOW JRNL TITL TUNING CHEMICAL DNA LIGATION WITHIN DNA CRYSTALS AND JRNL TITL 2 PROTEIN-DNA CO-CRYSTALS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1700 - 6.4100 0.94 1280 141 0.1872 0.1979 REMARK 3 2 6.4100 - 5.0900 1.00 1289 146 0.1763 0.2314 REMARK 3 3 5.0900 - 4.4500 1.00 1286 141 0.1627 0.2026 REMARK 3 4 4.4500 - 4.0400 0.99 1258 143 0.1727 0.2314 REMARK 3 5 4.0400 - 3.7500 0.98 1235 134 0.2075 0.2850 REMARK 3 6 3.7500 - 3.5300 0.98 1249 136 0.2765 0.3271 REMARK 3 7 3.5300 - 3.3600 0.98 1257 139 0.2049 0.2511 REMARK 3 8 3.3600 - 3.2100 0.99 1236 136 0.2275 0.2567 REMARK 3 9 3.2100 - 3.0900 1.00 1260 134 0.2790 0.3890 REMARK 3 10 3.0900 - 2.9800 1.00 1244 144 0.3058 0.3733 REMARK 3 11 2.9800 - 2.8900 1.00 1238 140 0.3052 0.3475 REMARK 3 12 2.8900 - 2.8000 0.99 1261 131 0.2979 0.3452 REMARK 3 13 2.8000 - 2.7300 0.99 1242 146 0.2990 0.3389 REMARK 3 14 2.7300 - 2.6600 1.00 1244 127 0.3301 0.3901 REMARK 3 15 2.6600 - 2.6000 1.00 1231 146 0.3518 0.4174 REMARK 3 16 2.6000 - 2.5500 1.00 1236 128 0.3785 0.4153 REMARK 3 17 2.5500 - 2.5000 0.99 1206 146 0.3621 0.4335 REMARK 3 18 2.5000 - 2.4500 0.96 1238 118 0.3630 0.4282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.422 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.751 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3274 REMARK 3 ANGLE : 1.322 4697 REMARK 3 CHIRALITY : 0.071 510 REMARK 3 PLANARITY : 0.012 385 REMARK 3 DIHEDRAL : 27.510 867 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1225 -7.8062 1.6258 REMARK 3 T TENSOR REMARK 3 T11: 0.8576 T22: 0.7257 REMARK 3 T33: 0.7690 T12: 0.0700 REMARK 3 T13: 0.0970 T23: -0.1882 REMARK 3 L TENSOR REMARK 3 L11: 0.8082 L22: 1.9910 REMARK 3 L33: 1.7252 L12: 1.0583 REMARK 3 L13: 0.2379 L23: 0.7544 REMARK 3 S TENSOR REMARK 3 S11: -0.2317 S12: -0.1837 S13: 0.4276 REMARK 3 S21: 0.0442 S22: -0.0367 S23: -0.2529 REMARK 3 S31: -0.3176 S32: -0.3749 S33: -0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1819 -40.2060 -30.4514 REMARK 3 T TENSOR REMARK 3 T11: 1.5090 T22: 0.9422 REMARK 3 T33: 0.7623 T12: 0.2346 REMARK 3 T13: 0.6917 T23: -0.4206 REMARK 3 L TENSOR REMARK 3 L11: 0.9973 L22: 0.5440 REMARK 3 L33: 0.3765 L12: -0.7657 REMARK 3 L13: -0.4937 L23: 0.5136 REMARK 3 S TENSOR REMARK 3 S11: 0.2444 S12: 0.7356 S13: 0.4494 REMARK 3 S21: -0.7389 S22: 0.0137 S23: -0.9140 REMARK 3 S31: 0.4551 S32: -0.0739 S33: 0.1219 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8473 -39.2097 -32.7634 REMARK 3 T TENSOR REMARK 3 T11: 1.5935 T22: 1.1735 REMARK 3 T33: 1.1102 T12: 0.2263 REMARK 3 T13: 0.5034 T23: -0.3113 REMARK 3 L TENSOR REMARK 3 L11: 1.9870 L22: 0.2261 REMARK 3 L33: 0.5546 L12: -0.6543 REMARK 3 L13: -0.4644 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.9474 S12: 0.6550 S13: 0.4246 REMARK 3 S21: -1.8649 S22: -0.0137 S23: -1.0686 REMARK 3 S31: -0.6970 S32: 0.3595 S33: 0.5261 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1521 -9.8763 2.6483 REMARK 3 T TENSOR REMARK 3 T11: 0.9314 T22: 0.7552 REMARK 3 T33: 0.6159 T12: 0.0694 REMARK 3 T13: 0.0961 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 1.5393 L22: 1.8135 REMARK 3 L33: 0.4299 L12: -0.0589 REMARK 3 L13: 0.5447 L23: -0.8423 REMARK 3 S TENSOR REMARK 3 S11: -0.1928 S12: -0.3774 S13: 0.1833 REMARK 3 S21: 0.3175 S22: 0.3548 S23: -0.3034 REMARK 3 S31: -0.6573 S32: 0.2094 S33: 0.1222 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7999 -47.2704 -14.6129 REMARK 3 T TENSOR REMARK 3 T11: 0.6670 T22: 0.5929 REMARK 3 T33: 0.9705 T12: 0.0111 REMARK 3 T13: 0.2275 T23: -0.2610 REMARK 3 L TENSOR REMARK 3 L11: 1.4414 L22: 0.8937 REMARK 3 L33: 1.6501 L12: 0.1852 REMARK 3 L13: -0.3984 L23: 0.1929 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.2738 S13: -0.8932 REMARK 3 S21: -0.6591 S22: 0.0884 S23: 0.0236 REMARK 3 S31: 0.1336 S32: 0.0034 S33: 0.0410 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4302 -48.2890 -6.2907 REMARK 3 T TENSOR REMARK 3 T11: 0.5120 T22: 0.6678 REMARK 3 T33: 1.0002 T12: 0.0131 REMARK 3 T13: 0.2611 T23: -0.0787 REMARK 3 L TENSOR REMARK 3 L11: 1.2894 L22: 1.4886 REMARK 3 L33: 1.3336 L12: 0.0988 REMARK 3 L13: 0.3639 L23: -1.1582 REMARK 3 S TENSOR REMARK 3 S11: -0.3016 S12: 0.1586 S13: -0.9485 REMARK 3 S21: 0.0825 S22: 0.3413 S23: -0.1906 REMARK 3 S31: 1.0449 S32: -0.4106 S33: 0.0360 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3730 -38.2218 -5.2941 REMARK 3 T TENSOR REMARK 3 T11: 0.4634 T22: 0.5698 REMARK 3 T33: 0.7340 T12: -0.0160 REMARK 3 T13: 0.0794 T23: -0.1401 REMARK 3 L TENSOR REMARK 3 L11: 1.4174 L22: 1.1220 REMARK 3 L33: 0.4810 L12: -1.0967 REMARK 3 L13: -1.0303 L23: -0.4505 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.0268 S13: -0.5701 REMARK 3 S21: -0.2502 S22: -0.0830 S23: -0.0955 REMARK 3 S31: 0.0161 S32: -0.2250 S33: -0.0123 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2195 -31.1190 -7.8213 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.5830 REMARK 3 T33: 0.7651 T12: 0.0205 REMARK 3 T13: 0.0116 T23: -0.1485 REMARK 3 L TENSOR REMARK 3 L11: 2.0962 L22: 2.9605 REMARK 3 L33: 3.0391 L12: 0.1051 REMARK 3 L13: -0.2176 L23: 1.1613 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.3572 S13: -0.3348 REMARK 3 S21: -0.2468 S22: 0.0877 S23: 0.4106 REMARK 3 S31: -0.1117 S32: -0.0138 S33: 0.0862 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000266225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 39.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05981 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 2.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 350 MM MGCL2, 25% PEG 400, AND 100 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.41400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.33500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.94800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.41400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.33500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.94800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.41400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.33500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.94800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.41400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.33500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.94800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 33 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA A 33 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A 33 C2 N3 C4 REMARK 470 DA B 35 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA B 35 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 35 C2 N3 C4 REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 56 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 117 CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 77 O HOH C 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 14 O3' DG B 14 C3' -0.040 REMARK 500 VAL C 94 CB VAL C 94 CG2 -0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC A 26 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG B 27 O5' - P - OP1 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 132 108.74 -51.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH A 202 O 100.3 REMARK 620 3 HOH A 203 O 86.4 99.9 REMARK 620 4 DG B 27 OP1 102.4 94.6 161.4 REMARK 620 5 HOH B 206 O 166.7 82.6 80.3 90.3 REMARK 620 6 HOH B 207 O 107.4 151.5 75.4 86.3 68.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 27 OP2 REMARK 620 2 HOH B 201 O 67.4 REMARK 620 3 HOH B 202 O 67.8 20.7 REMARK 620 4 HOH B 203 O 77.2 17.4 11.7 REMARK 620 5 HOH B 204 O 72.3 6.4 17.5 11.4 REMARK 620 6 HOH B 205 O 81.9 21.8 15.0 5.0 15.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 91.4 REMARK 620 3 HOH C 401 O 62.7 110.4 REMARK 620 4 HOH C 402 O 110.7 64.8 67.3 REMARK 620 5 HOH C 403 O 166.5 75.5 124.7 67.1 REMARK 620 6 HOH C 404 O 83.4 92.9 138.4 153.1 93.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 ALSO A DESIGNED INTERPENTRATING, ISORETICULAR CO-CRYSTAL OF REPE54 REMARK 900 INITIATOR PROTEIN AND 31MER DNA DBREF 8TIQ A 2 33 PDB 8TIQ 8TIQ 2 33 DBREF 8TIQ B 4 35 PDB 8TIQ 8TIQ 4 35 DBREF 8TIQ C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 8TIQ MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 8TIQ ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 8TIQ GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 8TIQ SER C -8 UNP P03856 EXPRESSION TAG SEQADV 8TIQ HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 8TIQ HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 8TIQ HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 8TIQ HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 8TIQ HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 8TIQ HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 8TIQ GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 8TIQ SER C 0 UNP P03856 EXPRESSION TAG SEQADV 8TIQ PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 32 DC DC DC DG DG DA DC DC DT DG DT DG DA SEQRES 2 A 32 DC DA DA DA DT DT DG DC DC DC DT DC DA SEQRES 3 A 32 DG DA DC DG DG DA SEQRES 1 B 32 DC DC DG DT DC DT DG DA DG DG DG DC DA SEQRES 2 B 32 DA DT DT DT DG DT DC DA DC DA DG DG DT SEQRES 3 B 32 DC DC DG DG DG DA SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG A 101 1 HET MG B 101 1 HET MG B 102 1 HET MG C 301 1 HET MG C 302 1 HET MG C 303 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 6(MG 2+) FORMUL 10 HOH *16(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 LEU C 135 ILE C 140 1 6 HELIX 6 AA6 SER C 152 THR C 154 5 3 HELIX 7 AA7 ASN C 159 GLN C 171 1 13 HELIX 8 AA8 ILE C 185 TYR C 192 1 8 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 ILE C 131 -1 O TYR C 127 N ILE C 62 SHEET 3 AA2 3 PHE C 115 HIS C 120 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N SER C 225 O SER C 241 LINK O HOH A 201 MG MG B 101 4555 1555 2.19 LINK O HOH A 202 MG MG B 101 4555 1555 1.81 LINK O HOH A 203 MG MG B 101 4555 1555 2.32 LINK OP1 DG B 27 MG MG B 101 1555 1555 2.22 LINK OP2 DG B 27 MG MG B 102 1555 4555 2.00 LINK MG MG B 101 O HOH B 206 1555 1555 2.29 LINK MG MG B 101 O HOH B 207 1555 1555 2.50 LINK MG MG B 102 O HOH B 201 1555 4555 2.16 LINK MG MG B 102 O HOH B 202 1555 1555 2.73 LINK MG MG B 102 O HOH B 203 1555 4555 1.81 LINK MG MG B 102 O HOH B 204 1555 1555 2.11 LINK MG MG B 102 O HOH B 205 1555 4555 1.88 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.09 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.44 LINK MG MG C 301 O HOH C 401 1555 1555 2.06 LINK MG MG C 301 O HOH C 402 1555 1555 2.35 LINK MG MG C 301 O HOH C 403 1555 1555 2.30 LINK MG MG C 301 O HOH C 404 1555 1555 2.39 CRYST1 74.828 130.670 137.896 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007252 0.00000