HEADER HYDROLASE 30-OCT-98 8TLI TITLE THERMOLYSIN (100% ISOPROPANOL SOAKED CRYSTALS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (THERMOLYSIN); COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE, METALLOPROTEINASE, ORGANIC SOLVENT EXPDTA X-RAY DIFFRACTION AUTHOR A.C.ENGLISH,S.H.DONE,C.R.GROOM,R.E.HUBBARD REVDAT 4 27-DEC-23 8TLI 1 REMARK LINK REVDAT 3 24-FEB-09 8TLI 1 VERSN REVDAT 2 01-APR-03 8TLI 1 JRNL REVDAT 1 13-MAR-00 8TLI 0 JRNL AUTH A.C.ENGLISH,S.H.DONE,L.S.CAVES,C.R.GROOM,R.E.HUBBARD JRNL TITL LOCATING INTERACTION SITES ON PROTEINS: THE CRYSTAL JRNL TITL 2 STRUCTURE OF THERMOLYSIN SOAKED IN 2% TO 100% ISOPROPANOL. JRNL REF PROTEINS V. 37 628 1999 JRNL REFN ISSN 0887-3585 JRNL PMID 10651278 JRNL DOI 10.1002/(SICI)1097-0134(19991201)37:4<628::AID-PROT13>3.3.CO JRNL DOI 2 ;2-7 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 16875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.041 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.047 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.143 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.187 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.338 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.150 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.700 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 15.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 21.700; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.482 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.123 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.720 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.012 ; 10.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS ENTRY FORMS PART OF A SERIES OF STRUCTURES GENERATED REMARK 3 FROM SOAKING CRYSTALS OF THERMOLYSIN IN ISOPROPANOL. AT REMARK 3 THIS CONCENTRATION (100% ISOPROPANOL) ELEVEN MOLECULES OF REMARK 3 ISOPROPANOL ARE PROTEIN BOUND. IPA 1001, 1005, 1008, AND REMARK 3 1009 ARE LOCATED IN THE S1(PRIME), S2, S1, AND S2(PRIME) REMARK 3 SUBSITES, RESPECTIVELY. REMARK 4 REMARK 4 8TLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-98. REMARK 100 THE DEPOSITION ID IS D_1000000010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-97 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.47333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.94667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.21000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.68333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.73667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.47333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.94667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.68333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.21000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.73667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ACTIVE SITE CLEFT OF THERMOLYSIN CONTAINS AT LEAST FOUR REMARK 400 SUBSITES S1, S1(PRIME), S2, AND S2(PRIME). REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 157 OE2 GLU A 166 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 186 NE1 TRP A 186 CE2 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 27 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 35 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 37 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 THR A 49 OG1 - CB - CG2 ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 12.5 DEGREES REMARK 500 PHE A 63 CB - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 PHE A 63 CB - CG - CD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 TYR A 75 CG - CD1 - CE1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 110 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 GLU A 166 OE1 - CD - OE2 ANGL. DEV. = -20.9 DEGREES REMARK 500 GLU A 166 CG - CD - OE1 ANGL. DEV. = 24.0 DEGREES REMARK 500 TYR A 179 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 179 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP A 185 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 GLU A 187 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 GLU A 190 OE1 - CD - OE2 ANGL. DEV. = -20.8 DEGREES REMARK 500 GLU A 190 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP A 191 OD1 - CG - OD2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 191 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 213 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TYR A 221 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 221 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASN A 280 CB - CG - OD1 ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 79.77 -167.59 REMARK 500 THR A 26 -56.13 75.03 REMARK 500 PHE A 62 72.29 -119.12 REMARK 500 SER A 92 177.19 71.03 REMARK 500 SER A 107 -163.90 69.50 REMARK 500 ASN A 111 48.77 -96.76 REMARK 500 THR A 152 -92.56 -118.88 REMARK 500 ASN A 159 -143.70 54.61 REMARK 500 ASN A 183 60.00 39.32 REMARK 500 THR A 194 80.01 35.57 REMARK 500 ASP A 207 78.62 -156.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 47 -16.12 REMARK 500 TYR A 76 -11.59 REMARK 500 ASN A 96 10.75 REMARK 500 GLY A 189 -12.75 REMARK 500 TYR A 193 12.86 REMARK 500 LYS A 219 10.14 REMARK 500 ASP A 226 12.49 REMARK 500 VAL A 230 -10.07 REMARK 500 TYR A 251 11.81 REMARK 500 PHE A 281 11.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE ORIENTATION OF ISOPROPANOL IPA 1003 IS TENTATIVE. REMARK 600 ALTHOUGH THE DENSITY FOR IPA 1003 IS STRONG, THE ORIENTATION REMARK 600 OF THE MOLECULE WITHIN THE DENSITY IS AMBIGUOUS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD2 REMARK 620 2 ASP A 57 OD1 46.6 REMARK 620 3 ASP A 59 OD1 70.4 116.1 REMARK 620 4 GLN A 61 O 90.8 98.4 90.8 REMARK 620 5 HOH A1016 O 94.3 86.2 89.6 174.6 REMARK 620 6 HOH A1027 O 129.6 84.9 158.7 82.6 95.2 REMARK 620 7 HOH A1047 O 151.5 161.1 81.1 88.5 86.2 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 85.6 REMARK 620 3 GLU A 177 OE2 128.6 43.8 REMARK 620 4 ASP A 185 OD1 150.4 121.9 78.1 REMARK 620 5 GLU A 187 O 67.4 139.8 142.8 83.3 REMARK 620 6 GLU A 190 OE1 85.6 128.3 128.8 84.9 80.4 REMARK 620 7 GLU A 190 OE2 105.4 90.7 86.9 86.7 124.0 43.8 REMARK 620 8 HOH A1014 O 93.2 80.1 73.0 82.0 72.7 151.2 158.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 105.9 REMARK 620 3 GLU A 166 OE2 128.0 91.4 REMARK 620 4 GLU A 166 OE1 85.6 133.5 50.4 REMARK 620 5 HOH A1002 O 98.2 108.2 122.8 114.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 92.0 REMARK 620 3 ASP A 185 OD2 93.4 95.1 REMARK 620 4 GLU A 190 OE2 93.6 169.8 76.1 REMARK 620 5 HOH A1013 O 168.2 88.3 98.3 87.8 REMARK 620 6 HOH A1030 O 83.7 97.7 167.0 91.4 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 OG1 72.4 REMARK 620 3 THR A 194 O 73.7 69.7 REMARK 620 4 ILE A 197 O 158.6 105.8 85.6 REMARK 620 5 ASP A 200 OD1 119.8 70.0 129.7 77.7 REMARK 620 6 HOH A1038 O 85.8 149.3 83.8 86.6 140.7 REMARK 620 7 HOH A1065 O 91.6 126.1 154.7 105.6 75.4 74.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TLX RELATED DB: PDB REMARK 900 RELATED ID: 2TLX RELATED DB: PDB REMARK 900 RELATED ID: 1TLI RELATED DB: PDB REMARK 900 RELATED ID: 2TLI RELATED DB: PDB REMARK 900 RELATED ID: 3TLI RELATED DB: PDB REMARK 900 RELATED ID: 4TLI RELATED DB: PDB REMARK 900 RELATED ID: 5TLI RELATED DB: PDB REMARK 900 RELATED ID: 6TLI RELATED DB: PDB REMARK 900 RELATED ID: 7TLI RELATED DB: PDB DBREF 8TLI A 1 316 UNP P00800 THER_BACTH 1 316 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET ZN A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET DMS A2000 4 HET IPA A2001 4 HET IPA A2002 4 HET IPA A2003 4 HET IPA A2004 4 HET IPA A2005 4 HET IPA A2006 4 HET IPA A2007 4 HET IPA A2008 4 HET IPA A2009 4 HET IPA A2010 4 HET IPA A2011 4 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 DMS C2 H6 O S FORMUL 8 IPA 11(C3 H8 O) FORMUL 19 HOH *99(H2 O) HELIX 1 1 SER A 65 HIS A 88 5 24 HELIX 2 2 LEU A 133 GLY A 135 5 3 HELIX 3 3 ILE A 137 TYR A 151 1 15 HELIX 4 4 ASN A 159 TYR A 179 1 21 HELIX 5 5 PRO A 208 TYR A 211 5 4 HELIX 6 6 TYR A 217 LYS A 219 5 3 HELIX 7 7 GLN A 225 GLY A 229 1 5 HELIX 8 8 ASN A 233 GLN A 246 5 14 HELIX 9 9 ARG A 260 GLN A 273 1 14 HELIX 10 10 PHE A 281 TYR A 296 1 16 HELIX 11 11 GLN A 301 ALA A 312 1 12 SHEET 1 A 3 THR A 4 ARG A 11 0 SHEET 2 A 3 GLN A 17 SER A 25 0 SHEET 3 A 3 TYR A 27 TYR A 29 -1 N TYR A 29 O THR A 23 SHEET 1 B 2 ILE A 39 ASP A 43 0 SHEET 2 B 2 ILE A 100 VAL A 104 0 SHEET 1 C 2 ALA A 113 TRP A 115 0 SHEET 2 C 2 MET A 120 TYR A 122 0 SHEET 1 D 2 GLY A 248 HIS A 250 0 SHEET 2 D 2 VAL A 253 VAL A 255 0 LINK OD2 ASP A 57 CA CA A 404 1555 1555 2.88 LINK OD1 ASP A 57 CA CA A 404 1555 1555 2.67 LINK OD1 ASP A 59 CA CA A 404 1555 1555 2.67 LINK O GLN A 61 CA CA A 404 1555 1555 2.59 LINK OD2 ASP A 138 CA CA A 402 1555 1555 2.87 LINK NE2 HIS A 142 ZN ZN A 401 1555 1555 2.04 LINK NE2 HIS A 146 ZN ZN A 401 1555 1555 2.02 LINK OE2 GLU A 166 ZN ZN A 401 1555 1555 2.12 LINK OE1 GLU A 166 ZN ZN A 401 1555 1555 2.36 LINK OE1 GLU A 177 CA CA A 402 1555 1555 2.66 LINK OE2 GLU A 177 CA CA A 402 1555 1555 3.05 LINK OE2 GLU A 177 CA CA A 403 1555 1555 2.65 LINK O ASN A 183 CA CA A 403 1555 1555 2.69 LINK OD1 ASP A 185 CA CA A 402 1555 1555 2.71 LINK OD2 ASP A 185 CA CA A 403 1555 1555 2.55 LINK O GLU A 187 CA CA A 402 1555 1555 2.89 LINK OE1 GLU A 190 CA CA A 402 1555 1555 2.65 LINK OE2 GLU A 190 CA CA A 402 1555 1555 2.54 LINK OE2 GLU A 190 CA CA A 403 1555 1555 2.65 LINK O TYR A 193 CA CA A 405 1555 1555 2.71 LINK OG1 THR A 194 CA CA A 405 1555 1555 2.77 LINK O THR A 194 CA CA A 405 1555 1555 2.39 LINK O ILE A 197 CA CA A 405 1555 1555 2.43 LINK OD1 ASP A 200 CA CA A 405 1555 1555 2.69 LINK ZN ZN A 401 O HOH A1002 1555 1555 2.02 LINK CA CA A 402 O HOH A1014 1555 1555 2.79 LINK CA CA A 403 O HOH A1013 1555 1555 2.49 LINK CA CA A 403 O HOH A1030 1555 1555 2.72 LINK CA CA A 404 O HOH A1016 1555 1555 2.84 LINK CA CA A 404 O HOH A1027 1555 1555 2.53 LINK CA CA A 404 O HOH A1047 1555 1555 2.76 LINK CA CA A 405 O HOH A1038 1555 1555 2.70 LINK CA CA A 405 O HOH A1065 1555 1555 2.58 CISPEP 1 LEU A 50 PRO A 51 0 7.62 SITE 1 AC1 5 HIS A 142 HIS A 146 TYR A 157 GLU A 166 SITE 2 AC1 5 HOH A1002 SITE 1 AC2 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC2 6 GLU A 190 HOH A1014 SITE 1 AC3 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC3 6 HOH A1013 HOH A1030 SITE 1 AC4 6 ASP A 57 ASP A 59 GLN A 61 HOH A1016 SITE 2 AC4 6 HOH A1027 HOH A1047 SITE 1 AC5 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC5 6 HOH A1038 HOH A1065 SITE 1 AC6 3 TYR A 66 HIS A 216 SER A 218 SITE 1 AC7 4 ALA A 113 GLU A 143 HOH A1067 IPA A2008 SITE 1 AC8 6 TYR A 81 TYR A 84 SER A 92 TYR A 93 SITE 2 AC8 6 VAL A 148 HOH A1021 SITE 1 AC9 3 LEU A 202 TYR A 211 ASP A 213 SITE 1 BC1 5 HIS A 216 TYR A 251 VAL A 253 ASP A 311 SITE 2 BC1 5 GLY A 314 SITE 1 BC2 4 THR A 48 TYR A 106 TRP A 115 GLY A 117 SITE 1 BC3 3 SER A 5 VAL A 7 HOH A1033 SITE 1 BC4 3 PHE A 114 TRP A 115 GLU A 143 SITE 1 BC5 3 ASN A 112 LEU A 202 IPA A2001 SITE 1 BC6 3 ASP A 37 ASN A 97 GLY A 199 SITE 1 BC7 2 TYR A 193 ASP A 200 SITE 1 BC8 3 ASN A 33 GLY A 36 SER A 198 CRYST1 93.040 93.040 130.420 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010748 0.006205 0.000000 0.00000 SCALE2 0.000000 0.012411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007667 0.00000