HEADER BIOSYNTHETIC PROTEIN 01-AUG-23 8TN3 TITLE STRUCTURE OF S. HYGROSCOPICUS AMINOTRANSFERASE MPPQ COMPLEXED WITH TITLE 2 PYRIDOXAMINE 5'-PHOSPHATE (PMP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLP-DEPENDENT AMINOTRANSFERASE MPPQ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HYGROSCOPICUS; SOURCE 3 ORGANISM_TAXID: 1912; SOURCE 4 GENE: MPPQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PE-SUMOKAN KEYWDS MANNOPEPTIMYCIN, AMINOTRANSFERASE, PMP, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,N.VUKSANOVIC REVDAT 1 22-NOV-23 8TN3 0 SPRSDE 22-NOV-23 8TN3 7UKY JRNL AUTH N.VUKSANOVIC,T.R.MELKONIAN,D.A.SERRANO,A.W.SCHWABACHER, JRNL AUTH 2 N.R.SILVAGGI JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF MPPQ, AN JRNL TITL 2 L-ENDURACIDIDINE BIOSYNTHETIC ENZYME FROM STREPTOMYCES JRNL TITL 3 HYGROSCOPICUS. JRNL REF BIOCHEMISTRY V. 62 3105 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37890134 JRNL DOI 10.1021/ACS.BIOCHEM.3C00428 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 89773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 4602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0700 - 3.5100 0.99 8813 472 0.1374 0.1440 REMARK 3 2 3.5100 - 2.7800 0.99 8730 454 0.1410 0.1573 REMARK 3 3 2.7800 - 2.4300 0.98 8649 461 0.1320 0.1640 REMARK 3 4 2.4300 - 2.2100 0.98 8602 446 0.1193 0.1478 REMARK 3 5 2.2100 - 2.0500 0.97 8511 486 0.1291 0.1574 REMARK 3 6 2.0500 - 1.9300 0.97 8482 484 0.1320 0.1667 REMARK 3 7 1.9300 - 1.8300 0.97 8463 434 0.1399 0.1724 REMARK 3 8 1.8300 - 1.7500 0.96 8464 456 0.1627 0.1882 REMARK 3 9 1.7500 - 1.6900 0.96 8375 483 0.1661 0.2039 REMARK 3 10 1.6900 - 1.6300 0.95 8358 426 0.1776 0.2188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6190 REMARK 3 ANGLE : 1.002 8451 REMARK 3 CHIRALITY : 0.057 945 REMARK 3 PLANARITY : 0.012 1135 REMARK 3 DIHEDRAL : 13.392 2285 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6832 -5.6875 42.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0632 REMARK 3 T33: 0.1272 T12: 0.0001 REMARK 3 T13: -0.0003 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.4786 L22: 0.2797 REMARK 3 L33: 0.6880 L12: 0.0683 REMARK 3 L13: 0.0535 L23: 0.2657 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0057 S13: -0.0291 REMARK 3 S21: -0.0026 S22: -0.0192 S23: -0.0004 REMARK 3 S31: 0.0077 S32: 0.0007 S33: 0.0239 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8795 3.3903 41.6761 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0411 REMARK 3 T33: 0.1147 T12: 0.0035 REMARK 3 T13: -0.0168 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.2102 L22: 0.6493 REMARK 3 L33: 1.8297 L12: 0.2026 REMARK 3 L13: -0.3519 L23: -0.5845 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.0996 S13: 0.0079 REMARK 3 S21: -0.0852 S22: 0.0190 S23: 0.0331 REMARK 3 S31: 0.0483 S32: -0.0234 S33: 0.0398 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9810 -2.4815 25.7097 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1676 REMARK 3 T33: 0.1131 T12: -0.0117 REMARK 3 T13: 0.0100 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 2.6868 L22: 2.0428 REMARK 3 L33: 1.8566 L12: -0.7663 REMARK 3 L13: -0.6179 L23: -0.2674 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: 0.4260 S13: -0.2168 REMARK 3 S21: -0.2223 S22: -0.0819 S23: -0.0681 REMARK 3 S31: 0.0858 S32: 0.0631 S33: 0.0247 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6147 -6.4081 68.4842 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.1935 REMARK 3 T33: 0.1159 T12: -0.0078 REMARK 3 T13: -0.0166 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.8278 L22: 0.3443 REMARK 3 L33: 0.9730 L12: -0.0314 REMARK 3 L13: -0.2141 L23: -0.1254 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.3147 S13: -0.0896 REMARK 3 S21: 0.0639 S22: -0.0194 S23: -0.0100 REMARK 3 S31: 0.1153 S32: 0.0731 S33: 0.0104 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0751 -8.6425 74.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.3537 REMARK 3 T33: 0.1559 T12: 0.0081 REMARK 3 T13: -0.0225 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 1.6073 L22: 1.1365 REMARK 3 L33: 1.4294 L12: -0.5963 REMARK 3 L13: 0.7025 L23: -1.0685 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.5834 S13: -0.0473 REMARK 3 S21: 0.1233 S22: -0.0800 S23: -0.1764 REMARK 3 S31: 0.0513 S32: 0.2100 S33: 0.0669 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6876 -2.1671 79.6692 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.4114 REMARK 3 T33: 0.1164 T12: 0.0249 REMARK 3 T13: -0.0084 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 1.2817 L22: 0.8980 REMARK 3 L33: 1.4005 L12: -0.2677 REMARK 3 L13: -0.2241 L23: 0.0738 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.6466 S13: -0.0945 REMARK 3 S21: 0.2785 S22: 0.1125 S23: 0.0727 REMARK 3 S31: 0.0699 S32: -0.0354 S33: 0.0236 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 43.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25 % PEG 3350, AND 0.1-0.2 M REMARK 280 AMMONIUM CITRATE TRIHYDRATE, TRILITHIUM CITRATE, OR AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.03550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 404 REMARK 465 SER A 405 REMARK 465 THR A 406 REMARK 465 PRO A 407 REMARK 465 ASP A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 ILE A 411 REMARK 465 GLY A 412 REMARK 465 VAL A 413 REMARK 465 ARG A 414 REMARK 465 SER A 415 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 VAL B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 9 REMARK 465 PRO B 10 REMARK 465 HIS B 11 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 VAL B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 404 REMARK 465 SER B 405 REMARK 465 THR B 406 REMARK 465 PRO B 407 REMARK 465 ASP B 408 REMARK 465 LEU B 409 REMARK 465 GLU B 410 REMARK 465 ILE B 411 REMARK 465 GLY B 412 REMARK 465 VAL B 413 REMARK 465 ARG B 414 REMARK 465 SER B 415 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 207 O HOH B 601 1.38 REMARK 500 HH22 ARG B 148 OE1 GLU B 168 1.49 REMARK 500 HG1 THR B 374 O GLY B 376 1.49 REMARK 500 HZ2 LYS A 175 O HOH A 611 1.56 REMARK 500 O GLY A 346 O HOH A 601 2.08 REMARK 500 O HOH B 744 O HOH B 850 2.13 REMARK 500 O HOH A 886 O HOH A 948 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 103 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 45.27 -92.81 REMARK 500 SER A 106 33.68 -97.53 REMARK 500 ASP A 153 -159.60 -128.55 REMARK 500 ASN A 284 82.52 -154.44 REMARK 500 SER B 106 35.84 -97.16 REMARK 500 ASP B 153 -163.51 -126.98 REMARK 500 ASN B 284 80.75 -156.16 REMARK 500 ASP B 347 -141.44 62.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 198 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1013 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1014 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B 894 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 895 DISTANCE = 6.23 ANGSTROMS DBREF 8TN3 A 1 415 UNP Q643B9 Q643B9_STRHY 1 415 DBREF 8TN3 B 1 415 UNP Q643B9 Q643B9_STRHY 1 415 SEQRES 1 A 415 MET THR PRO VAL ALA GLU GLY GLY LEU PRO HIS GLY SER SEQRES 2 A 415 VAL PRO SER LEU SER HIS THR ARG GLN TRP ARG PRO GLY SEQRES 3 A 415 VAL VAL GLN GLU VAL ALA PRO ALA GLY VAL LEU ASP LEU SEQRES 4 A 415 GLY PRO GLY TYR ILE GLU PRO ALA LEU LEU PRO VAL ARG SEQRES 5 A 415 LEU LEU ARG GLY ALA TYR GLU GLN ALA LEU ALA GLU TYR SEQRES 6 A 415 GLY ALA ALA ALA LEU GLY TYR GLY HIS ASP PRO GLY ALA SEQRES 7 A 415 GLN PRO LEU ARG ASP ARG LEU ALA ALA ARG ALA ALA ALA SEQRES 8 A 415 ALA ASP GLY LEU PRO CYS ASP PRO ASP GLN VAL LEU LEU SEQRES 9 A 415 THR SER GLY THR SER GLN ALA LEU TYR LEU LEU ALA THR SEQRES 10 A 415 SER LEU ALA ALA PRO GLY ASP THR VAL LEU THR GLU GLU SEQRES 11 A 415 LEU CYS TYR ASP LEU GLY GLN ARG ILE PHE ARG ASP CYS SEQRES 12 A 415 SER LEU ARG LEU ARG GLN VAL ALA MET ASP GLY SER GLY SEQRES 13 A 415 MET LEU PRO ASP ALA LEU ASP ARG ALA LEU THR GLU GLY SEQRES 14 A 415 ALA ARG ALA GLY ALA LYS THR ALA PHE VAL TYR LEU THR SEQRES 15 A 415 PRO THR HIS HIS ASN PRO THR GLY HIS THR MET PRO LEU SEQRES 16 A 415 ALA ARG ARG ARG LEU LEU LEU GLU VAL ALA ALA ARG HIS SEQRES 17 A 415 ASP VAL LEU ILE VAL GLU ASP ASP ALA TYR THR GLU LEU SEQRES 18 A 415 SER LEU ILE PRO ASP ARG THR PRO PRO PRO SER LEU ALA SEQRES 19 A 415 ALA LEU ALA GLY TYR ARG ARG VAL VAL ARG LEU CYS SER SEQRES 20 A 415 PHE SER LYS THR LEU GLY PRO GLY LEU ARG LEU GLY TRP SEQRES 21 A 415 LEU LEU ALA ASP ARG GLU LEU ALA GLY ARG LEU ALA THR SEQRES 22 A 415 HIS GLY LEU PHE VAL SER GLY GLY SER LEU ASN HIS THR SEQRES 23 A 415 THR SER LEU ALA VAL SER THR LEU LEU ALA SER GLY ALA SEQRES 24 A 415 TYR ASP ARG HIS LEU ASP ALA PHE ARG ALA GLN LEU ARG SEQRES 25 A 415 ALA ARG ARG ASP ALA LEU VAL GLY ALA LEU ARG ALA MET SEQRES 26 A 415 LEU ASP ASP GLY VAL GLU LEU ARG THR PRO GLU GLY GLY SEQRES 27 A 415 PHE PHE LEU TRP LEU ARG ALA GLY ASP GLY ALA ASP GLU SEQRES 28 A 415 ARG GLU LEU LEU ASP GLY ALA ALA ARG ALA GLY VAL ARG SEQRES 29 A 415 ILE ALA ALA GLY SER ARG PHE GLY THR THR GLN GLY ALA SEQRES 30 A 415 GLY LEU ARG LEU ALA PHE SER PHE ASN PRO PRO ALA LEU SEQRES 31 A 415 LEU GLU GLN ALA ALA LYS ARG LEU THR THR ALA TRP SER SEQRES 32 A 415 GLY SER THR PRO ASP LEU GLU ILE GLY VAL ARG SER SEQRES 1 B 415 MET THR PRO VAL ALA GLU GLY GLY LEU PRO HIS GLY SER SEQRES 2 B 415 VAL PRO SER LEU SER HIS THR ARG GLN TRP ARG PRO GLY SEQRES 3 B 415 VAL VAL GLN GLU VAL ALA PRO ALA GLY VAL LEU ASP LEU SEQRES 4 B 415 GLY PRO GLY TYR ILE GLU PRO ALA LEU LEU PRO VAL ARG SEQRES 5 B 415 LEU LEU ARG GLY ALA TYR GLU GLN ALA LEU ALA GLU TYR SEQRES 6 B 415 GLY ALA ALA ALA LEU GLY TYR GLY HIS ASP PRO GLY ALA SEQRES 7 B 415 GLN PRO LEU ARG ASP ARG LEU ALA ALA ARG ALA ALA ALA SEQRES 8 B 415 ALA ASP GLY LEU PRO CYS ASP PRO ASP GLN VAL LEU LEU SEQRES 9 B 415 THR SER GLY THR SER GLN ALA LEU TYR LEU LEU ALA THR SEQRES 10 B 415 SER LEU ALA ALA PRO GLY ASP THR VAL LEU THR GLU GLU SEQRES 11 B 415 LEU CYS TYR ASP LEU GLY GLN ARG ILE PHE ARG ASP CYS SEQRES 12 B 415 SER LEU ARG LEU ARG GLN VAL ALA MET ASP GLY SER GLY SEQRES 13 B 415 MET LEU PRO ASP ALA LEU ASP ARG ALA LEU THR GLU GLY SEQRES 14 B 415 ALA ARG ALA GLY ALA LYS THR ALA PHE VAL TYR LEU THR SEQRES 15 B 415 PRO THR HIS HIS ASN PRO THR GLY HIS THR MET PRO LEU SEQRES 16 B 415 ALA ARG ARG ARG LEU LEU LEU GLU VAL ALA ALA ARG HIS SEQRES 17 B 415 ASP VAL LEU ILE VAL GLU ASP ASP ALA TYR THR GLU LEU SEQRES 18 B 415 SER LEU ILE PRO ASP ARG THR PRO PRO PRO SER LEU ALA SEQRES 19 B 415 ALA LEU ALA GLY TYR ARG ARG VAL VAL ARG LEU CYS SER SEQRES 20 B 415 PHE SER LYS THR LEU GLY PRO GLY LEU ARG LEU GLY TRP SEQRES 21 B 415 LEU LEU ALA ASP ARG GLU LEU ALA GLY ARG LEU ALA THR SEQRES 22 B 415 HIS GLY LEU PHE VAL SER GLY GLY SER LEU ASN HIS THR SEQRES 23 B 415 THR SER LEU ALA VAL SER THR LEU LEU ALA SER GLY ALA SEQRES 24 B 415 TYR ASP ARG HIS LEU ASP ALA PHE ARG ALA GLN LEU ARG SEQRES 25 B 415 ALA ARG ARG ASP ALA LEU VAL GLY ALA LEU ARG ALA MET SEQRES 26 B 415 LEU ASP ASP GLY VAL GLU LEU ARG THR PRO GLU GLY GLY SEQRES 27 B 415 PHE PHE LEU TRP LEU ARG ALA GLY ASP GLY ALA ASP GLU SEQRES 28 B 415 ARG GLU LEU LEU ASP GLY ALA ALA ARG ALA GLY VAL ARG SEQRES 29 B 415 ILE ALA ALA GLY SER ARG PHE GLY THR THR GLN GLY ALA SEQRES 30 B 415 GLY LEU ARG LEU ALA PHE SER PHE ASN PRO PRO ALA LEU SEQRES 31 B 415 LEU GLU GLN ALA ALA LYS ARG LEU THR THR ALA TRP SER SEQRES 32 B 415 GLY SER THR PRO ASP LEU GLU ILE GLY VAL ARG SER HET PMP A 501 26 HET PMP B 501 26 HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 3 PMP 2(C8 H13 N2 O5 P) FORMUL 5 HOH *709(H2 O) HELIX 1 AA1 GLU A 45 LEU A 49 5 5 HELIX 2 AA2 PRO A 50 GLY A 66 1 17 HELIX 3 AA3 ALA A 67 LEU A 70 5 4 HELIX 4 AA4 ALA A 78 GLY A 94 1 17 HELIX 5 AA5 ASP A 98 ASP A 100 5 3 HELIX 6 AA6 GLY A 107 LEU A 119 1 13 HELIX 7 AA7 TYR A 133 CYS A 143 1 11 HELIX 8 AA8 LEU A 158 GLY A 173 1 16 HELIX 9 AA9 PRO A 194 ASP A 209 1 16 HELIX 10 AB1 SER A 232 ALA A 237 1 6 HELIX 11 AB2 GLY A 253 ARG A 257 5 5 HELIX 12 AB3 ASP A 264 THR A 273 1 10 HELIX 13 AB4 HIS A 274 GLY A 281 1 8 HELIX 14 AB5 ASN A 284 SER A 297 1 14 HELIX 15 AB6 GLY A 298 LEU A 322 1 25 HELIX 16 AB7 LEU A 322 ASP A 327 1 6 HELIX 17 AB8 ASP A 350 GLY A 362 1 13 HELIX 18 AB9 SER A 369 PHE A 371 5 3 HELIX 19 AC1 PRO A 387 SER A 403 1 17 HELIX 20 AC2 GLU B 45 LEU B 49 5 5 HELIX 21 AC3 PRO B 50 GLY B 66 1 17 HELIX 22 AC4 ALA B 67 LEU B 70 5 4 HELIX 23 AC5 ALA B 78 GLY B 94 1 17 HELIX 24 AC6 ASP B 98 ASP B 100 5 3 HELIX 25 AC7 GLY B 107 LEU B 119 1 13 HELIX 26 AC8 TYR B 133 CYS B 143 1 11 HELIX 27 AC9 LEU B 158 ALA B 172 1 15 HELIX 28 AD1 PRO B 194 ASP B 209 1 16 HELIX 29 AD2 SER B 232 ALA B 237 1 6 HELIX 30 AD3 GLY B 253 ARG B 257 5 5 HELIX 31 AD4 ASP B 264 THR B 273 1 10 HELIX 32 AD5 HIS B 274 GLY B 281 1 8 HELIX 33 AD6 ASN B 284 GLY B 298 1 15 HELIX 34 AD7 GLY B 298 LEU B 326 1 29 HELIX 35 AD8 ASP B 350 ALA B 361 1 12 HELIX 36 AD9 SER B 369 PHE B 371 5 3 HELIX 37 AE1 PRO B 387 SER B 403 1 17 SHEET 1 AA1 2 LEU A 37 ASP A 38 0 SHEET 2 AA1 2 VAL A 363 ARG A 364 1 O ARG A 364 N LEU A 37 SHEET 1 AA2 7 VAL A 102 THR A 105 0 SHEET 2 AA2 7 GLY A 259 LEU A 262 -1 O GLY A 259 N THR A 105 SHEET 3 AA2 7 VAL A 242 SER A 247 -1 N CYS A 246 O TRP A 260 SHEET 4 AA2 7 LEU A 211 ASP A 215 1 N GLU A 214 O LEU A 245 SHEET 5 AA2 7 THR A 176 LEU A 181 1 N VAL A 179 O VAL A 213 SHEET 6 AA2 7 THR A 125 GLU A 129 1 N LEU A 127 O TYR A 180 SHEET 7 AA2 7 ARG A 146 VAL A 150 1 O ARG A 146 N VAL A 126 SHEET 1 AA3 2 MET A 152 ASP A 153 0 SHEET 2 AA3 2 GLY A 156 MET A 157 -1 O GLY A 156 N ASP A 153 SHEET 1 AA4 4 GLU A 331 LEU A 332 0 SHEET 2 AA4 4 PHE A 340 GLY A 346 -1 O ARG A 344 N GLU A 331 SHEET 3 AA4 4 ALA A 377 ALA A 382 -1 O LEU A 381 N LEU A 341 SHEET 4 AA4 4 ALA A 366 ALA A 367 -1 N ALA A 366 O ARG A 380 SHEET 1 AA5 2 LEU B 37 ASP B 38 0 SHEET 2 AA5 2 VAL B 363 ARG B 364 1 O ARG B 364 N LEU B 37 SHEET 1 AA6 7 VAL B 102 THR B 105 0 SHEET 2 AA6 7 GLY B 259 LEU B 262 -1 O GLY B 259 N THR B 105 SHEET 3 AA6 7 VAL B 242 SER B 247 -1 N CYS B 246 O TRP B 260 SHEET 4 AA6 7 LEU B 211 ASP B 215 1 N GLU B 214 O LEU B 245 SHEET 5 AA6 7 THR B 176 LEU B 181 1 N VAL B 179 O VAL B 213 SHEET 6 AA6 7 THR B 125 GLU B 129 1 N LEU B 127 O TYR B 180 SHEET 7 AA6 7 ARG B 146 VAL B 150 1 O ARG B 146 N VAL B 126 SHEET 1 AA7 2 MET B 152 ASP B 153 0 SHEET 2 AA7 2 GLY B 156 MET B 157 -1 O GLY B 156 N ASP B 153 SHEET 1 AA8 4 GLU B 331 LEU B 332 0 SHEET 2 AA8 4 PHE B 340 ARG B 344 -1 O ARG B 344 N GLU B 331 SHEET 3 AA8 4 GLY B 378 ALA B 382 -1 O LEU B 381 N LEU B 341 SHEET 4 AA8 4 ALA B 366 ALA B 367 -1 N ALA B 366 O ARG B 380 CISPEP 1 ASN A 187 PRO A 188 0 14.72 CISPEP 2 ASN B 187 PRO B 188 0 11.52 CRYST1 47.766 94.071 84.287 90.00 95.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020921 0.000000 0.001867 0.00000 SCALE2 0.000000 0.010627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011910 0.00000