data_8TNS # _entry.id 8TNS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8TNS pdb_00008tns 10.2210/pdb8tns/pdb WWPDB D_1000276186 ? ? BMRB 52045 ? 10.13018/BMR52045 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-11-15 2 'Structure model' 1 1 2023-11-22 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8TNS _pdbx_database_status.recvd_initial_deposition_date 2023-08-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 52045 unspecified SASBDB . SASDSW7 'associated SAS data' # _pdbx_contact_author.id 2 _pdbx_contact_author.email sebutcher@wisc.edu _pdbx_contact_author.name_first Samuel _pdbx_contact_author.name_last Butcher _pdbx_contact_author.name_mi E _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6343-6643 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Escobar, C.A.' 1 0000-0002-4607-2996 'Petersen, R.' 2 0000-0003-3598-0507 'Butcher, S.E.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 435 _citation.language ? _citation.page_first 168340 _citation.page_last 168340 _citation.title 'Solution Structure of Poly(UG) RNA.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2023.168340 _citation.pdbx_database_id_PubMed 37924862 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Escobar, C.A.' 1 ? primary 'Petersen, R.J.' 2 ? primary 'Tonelli, M.' 3 ? primary 'Fan, L.' 4 ? primary 'Henzler-Wildman, K.A.' 5 ? primary 'Butcher, S.E.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3') ; _entity.formula_weight 7771.503 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GUGUGUGUGUGUGUGUGUGUGUGU _entity_poly.pdbx_seq_one_letter_code_can GUGUGUGUGUGUGUGUGUGUGUGU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 U n 1 5 G n 1 6 U n 1 7 G n 1 8 U n 1 9 G n 1 10 U n 1 11 G n 1 12 U n 1 13 G n 1 14 U n 1 15 G n 1 16 U n 1 17 G n 1 18 U n 1 19 G n 1 20 U n 1 21 G n 1 22 U n 1 23 G n 1 24 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 24 _pdbx_entity_src_syn.organism_scientific 'Caenorhabditis elegans' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 6239 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 U 24 24 24 U U A . n # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.entry_id _exptl.crystals_number _exptl.details _exptl.method _exptl.method_details ? ? ? ? ? 8TNS ? ? 'SOLUTION NMR' ? ? ? ? ? ? 8TNS ? ? 'SOLUTION SCATTERING' ? # _struct.entry_id 8TNS _struct.title 'Solution structure of poly(UG) RNA (GU)12 G-quadruplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8TNS _struct_keywords.text 'G-quadruplex, p(UG)-fold, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8TNS _struct_ref.pdbx_db_accession 8TNS _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8TNS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8TNS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 24 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N7 ? ? ? 1_555 A G 7 N2 ? ? A G 1 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 A G 7 N1 ? ? A G 1 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A G 1 N1 ? ? ? 1_555 A G 19 O6 ? ? A G 1 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A G 1 N2 ? ? ? 1_555 A G 19 N7 ? ? A G 1 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A G 9 O6 ? ? A G 3 A G 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A G 9 N7 ? ? A G 3 A G 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A G 3 N7 ? ? ? 1_555 A G 21 N2 ? ? A G 3 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A G 21 N1 ? ? A G 3 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 A U 10 N3 ? ? A U 4 A U 10 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A U 22 O4 ? ? A U 4 A U 22 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A G 11 O6 ? ? A G 5 A G 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A G 11 N7 ? ? A G 5 A G 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A G 5 N7 ? ? ? 1_555 A G 23 N2 ? ? A G 5 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A G 23 N1 ? ? A G 5 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A G 7 N7 ? ? ? 1_555 A G 13 N2 ? ? A G 7 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A G 13 N1 ? ? A G 7 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 15 O6 ? ? A G 9 A G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 15 N7 ? ? A G 9 A G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 A U 16 N3 ? ? A U 10 A U 16 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 11 N1 ? ? ? 1_555 A G 17 O6 ? ? A G 11 A G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 17 N7 ? ? A G 11 A G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 13 N7 ? ? ? 1_555 A G 19 N2 ? ? A G 13 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 13 O6 ? ? ? 1_555 A G 19 N1 ? ? A G 13 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 15 N1 ? ? ? 1_555 A G 21 O6 ? ? A G 15 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 15 N2 ? ? ? 1_555 A G 21 N7 ? ? A G 15 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A U 16 O4 ? ? ? 1_555 A U 22 N3 ? ? A U 16 A U 22 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 17 N1 ? ? ? 1_555 A G 23 O6 ? ? A G 17 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 17 N2 ? ? ? 1_555 A G 23 N7 ? ? A G 17 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A U 8 ? ? "O3'" A U 8 ? ? P A G 9 ? ? 129.04 119.70 9.34 1.20 Y 2 10 "C3'" A U 14 ? ? "O3'" A U 14 ? ? P A G 15 ? ? 128.63 119.70 8.93 1.20 Y 3 15 "C3'" A U 20 ? ? "O3'" A U 20 ? ? P A G 21 ? ? 128.96 119.70 9.26 1.20 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 17 ? ? 0.057 'SIDE CHAIN' 2 2 G A 11 ? ? 0.047 'SIDE CHAIN' 3 6 G A 11 ? ? 0.049 'SIDE CHAIN' 4 11 G A 11 ? ? 0.048 'SIDE CHAIN' 5 12 G A 11 ? ? 0.048 'SIDE CHAIN' 6 19 G A 11 ? ? 0.049 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 8TNS _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8TNS _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '400 uM (GU)12, 50 mM HEPES, 150 mM potassium chloride, 20 uM DSS, 10 % [U-2H] D2O, 90 % H2O, 90% H2O/10% D2O' '90% H2O/10% D2O' '(GU)12, H2O' solution ? 2 '400 uM (GU)12, 50 mM HEPES, 150 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' '(GU)12, D2O' solution ? 3 ;350 uM [U-13C; U-15N]-Gua (GU)12, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 10 % [U-2H] D2O, 90 % H2O, 90% H2O/10% D2O ; '90% H2O/10% D2O' 'G-(GU)12, H2O' solution '13C-15N G labeled (GU)12 RNA' 4 '350 uM [U-13C; U-15N]-Gua (GU)12, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' 'G-(GU)12, D2O' solution '13C-15N G labeled (GU)12 RNA' 5 ;200 uM [U-13C; U-15N]-Ura (GU)12, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 10 % [U-2H] D2O, 90 % H2O, 90% H2O/10% D2O ; '90% H2O/10% D2O' 'U-(GU)12, H2O' solution '13C-15N U labeled (GU)12 RNA' 6 '200 uM [U-13C; U-15N]-Ura (GU)12, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' 'U-(GU)12, D2O' solution '13C-15N U labeled (GU)12 RNA' 7 '500 uM (GU)11.5, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' '(GU)11.5' solution 'sequence GUGUGUGUGUGUGUGUGUGUGUG' 8 '350 uM (GU)12-dG1, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' dG1 solution '(GU)12 RNA with a deoxyribose substitution at position 1' 9 '770 uM (GU)12-dU2, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' dU2 solution '(GU)12 RNA with a deoxyribose substitution at position 2' 10 '380 uM (GU)12-dG3, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' dG3 solution '(GU)12 RNA with a deoxyribose substitution at position 3' 11 '270 uM (GU)12-dU4, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' dU4 solution '(GU)12 RNA with a deoxyribose substitution at position 4' 12 '190 uM (GU)12-dG5, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' dG5 solution '(GU)12 RNA with a deoxyribose substitution at position 5' 13 '210 uM (GU)12-dU6, 20 mM potassium phosphate, 100 mM potassium chloride, 20 uM DSS, 100 % [U-2H] D2O, 100% D2O' '100% D2O' dU6 solution '(GU)12 RNA with a deoxyribose substitution at position 6' 14 ;120 uM [U-13C; U-15N]-Gua (GU)12, 21 mM potassium phosphate, 60 mM potassium chloride, 0.02 % sodium azide, 0.8 mM magnesium chloride, 20 mg/mL Pf1 phage, 50 % H2O, 50 % [U-2H] D2O, 50% H2O/50% D2O ; '50% H2O/50% D2O' 'G-(GU)12-Phage' 'filamentous virus' '(GU)12 RNA sample for RDC collection' 15 ;70 uM [U-13C; U-15N]-Ura (GU)12, 21 mM potassium phosphate, 60 mM potassium chloride, 0.02 uM sodium azide, 0.8 uM magnesium chloride, 20 uM Pf1 phage, 50 % H2O, 50 % [U-2H] D2O, 50% H2O/50% D2O ; '50% H2O/50% D2O' 'U-(GU)12-Phage' 'filamentous virus' '(GU)12 RNA sample for RDC collection' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 '(GU)12' 400 ? uM 'natural abundance' 1 HEPES 50 ? mM 'natural abundance' 1 'potassium chloride' 150 ? mM 'natural abundance' 1 DSS 20 ? uM 'natural abundance' 1 D2O 10 ? % '[U-2H]' 1 H2O 90 ? % 'natural abundance' 2 '(GU)12' 400 ? uM 'natural abundance' 2 HEPES 50 ? mM 'natural abundance' 2 'potassium chloride' 150 ? mM 'natural abundance' 2 DSS 20 ? uM 'natural abundance' 2 D2O 100 ? % '[U-2H]' 3 '(GU)12' 350 ? uM '[U-13C; U-15N]-Gua' 3 'potassium phosphate' 20 ? mM 'natural abundance' 3 'potassium chloride' 100 ? mM 'natural abundance' 3 DSS 20 ? uM 'natural abundance' 3 D2O 10 ? % '[U-2H]' 3 H2O 90 ? % 'natural abundance' 4 '(GU)12' 350 ? uM '[U-13C; U-15N]-Gua' 4 'potassium phosphate' 20 ? mM 'natural abundance' 4 'potassium chloride' 100 ? mM 'natural abundance' 4 DSS 20 ? uM 'natural abundance' 4 D2O 100 ? % '[U-2H]' 5 '(GU)12' 200 ? uM '[U-13C; U-15N]-Ura' 5 'potassium phosphate' 20 ? mM 'natural abundance' 5 'potassium chloride' 100 ? mM 'natural abundance' 5 DSS 20 ? uM 'natural abundance' 5 D2O 10 ? % '[U-2H]' 5 H2O 90 ? % 'natural abundance' 6 '(GU)12' 200 ? uM '[U-13C; U-15N]-Ura' 6 'potassium phosphate' 20 ? mM 'natural abundance' 6 'potassium chloride' 100 ? mM 'natural abundance' 6 DSS 20 ? uM 'natural abundance' 6 D2O 100 ? % '[U-2H]' 7 '(GU)11.5' 500 ? uM 'natural abundance' 7 'potassium phosphate' 20 ? mM 'natural abundance' 7 'potassium chloride' 100 ? mM 'natural abundance' 7 DSS 20 ? uM 'natural abundance' 7 D2O 100 ? % '[U-2H]' 8 '(GU)12-dG1' 350 ? uM 'natural abundance' 8 'potassium phosphate' 20 ? mM 'natural abundance' 8 'potassium chloride' 100 ? mM 'natural abundance' 8 DSS 20 ? uM 'natural abundance' 8 D2O 100 ? % '[U-2H]' 9 '(GU)12-dU2' 770 ? uM 'natural abundance' 9 'potassium phosphate' 20 ? mM 'natural abundance' 9 'potassium chloride' 100 ? mM 'natural abundance' 9 DSS 20 ? uM 'natural abundance' 9 D2O 100 ? % '[U-2H]' 10 '(GU)12-dG3' 380 ? uM 'natural abundance' 10 'potassium phosphate' 20 ? mM 'natural abundance' 10 'potassium chloride' 100 ? mM 'natural abundance' 10 DSS 20 ? uM 'natural abundance' 10 D2O 100 ? % '[U-2H]' 11 '(GU)12-dU4' 270 ? uM 'natural abundance' 11 'potassium phosphate' 20 ? mM 'natural abundance' 11 'potassium chloride' 100 ? mM 'natural abundance' 11 DSS 20 ? uM 'natural abundance' 11 D2O 100 ? % '[U-2H]' 12 '(GU)12-dG5' 190 ? uM 'natural abundance' 12 'potassium phosphate' 20 ? mM 'natural abundance' 12 'potassium chloride' 100 ? mM 'natural abundance' 12 DSS 20 ? uM 'natural abundance' 12 D2O 100 ? % '[U-2H]' 13 '(GU)12-dU6' 210 ? uM 'natural abundance' 13 'potassium phosphate' 20 ? mM 'natural abundance' 13 'potassium chloride' 100 ? mM 'natural abundance' 13 DSS 20 ? uM 'natural abundance' 13 D2O 100 ? % '[U-2H]' 14 '(GU)12' 120 ? uM '[U-13C; U-15N]-Gua' 14 'potassium phosphate' 21 ? mM 'natural abundance' 14 'potassium chloride' 60 ? mM 'natural abundance' 14 'sodium azide' 0.02 ? % 'natural abundance' 14 'magnesium chloride' 0.8 ? mM 'natural abundance' 14 'Pf1 phage' 20 ? mg/mL 'natural abundance' 14 H2O 50 ? % 'natural abundance' 14 D2O 50 ? % '[U-2H]' 15 '(GU)12' 70 ? uM '[U-13C; U-15N]-Ura' 15 'potassium phosphate' 21 ? mM 'natural abundance' 15 'potassium chloride' 60 ? mM 'natural abundance' 15 'sodium azide' 0.02 ? uM 'natural abundance' 15 'magnesium chloride' 0.8 ? uM 'natural abundance' 15 'Pf1 phage' 20 ? uM 'natural abundance' 15 H2O 50 ? % 'natural abundance' 15 D2O 50 ? % '[U-2H]' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 293 atm 1 7.0 100 ? ? mM 'Standard conditions' ? pH ? ? K 2 276 atm 1 7.0 100 ? ? mM 'Low temperature' ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '1D 1H' 2 isotropic 2 1 5 '1D 31P' 2 isotropic 3 1 5 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced' 3 isotropic 4 1 5 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced CC decoupled' 3 isotropic 5 1 5 '2D H,H NOESY-1H,15N-HSQC' 3 isotropic 6 1 5 '2D H,N HCN BEST' 3 isotropic 7 1 5 ;2D 1H-13C HSQC sensitivity-enhanced CC decoupled (H1'-C1' H5-C5) ; 3 isotropic 8 1 5 '2D 1H-15N HSQC long-range' 3 isotropic 9 1 5 '2D 1H-13C HSQC sensitivity-enhanced CC decoupled (H6-C6)' 3 isotropic 10 1 5 '2D 1H-15N HSQC BEST' 3 isotropic 11 1 6 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced' 4 isotropic 12 1 6 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced CC decoupled' 4 isotropic 13 1 6 '3D H,H,C 13C-filtered NOESY-1H,13C-HSQC sensitivity-enhanced CC decoupled' 4 isotropic 14 1 6 '3D H,H,C 13C-filtered NOESY-1H,13C-HSQC sensitivity-enhanced' 3 isotropic 15 1 6 '3D HCCH-TOCSY' 3 isotropic 16 1 6 '3D HCCH-COSY' 3 isotropic 17 1 6 '2D 1H-13C HSQC constant-time' 4 isotropic 18 1 6 '3D HCP sensitivity-enhanced' 2 isotropic 19 1 3 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced (NOEs to ribose)' 3 isotropic 20 1 3 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced (NOEs to H8-C8)' 3 isotropic 21 1 3 '2D H,H NOESY-1H,15N-HSQC' 3 isotropic 22 1 3 '2D H,N HCN BEST' 4 isotropic 23 1 3 '2D 1H-13C HSQC sensitivity-enhanced CC decoupled' 4 isotropic 24 1 3 '2D 1H-15N HSQC long-range (H8-N9)' 4 isotropic 25 1 3 '2D 1H-13C HSQC sensitivity-enhanced' 4 isotropic 26 1 3 '2D 1H-15N HSQC BEST' 4 isotropic 27 2 3 '3D H,N,N NOESY-1H,15N-HSQC' 4 isotropic 28 2 3 '2D 1H-15N HSQC BEST' 4 isotropic 29 2 3 '2D 1H-13C HSQC sensitivity-enhanced' 4 isotropic 30 2 3 '2D 1H-13C HSQC constant-time' 4 isotropic 31 1 4 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced (NOEs to Ribose)' 3 isotropic 32 1 4 '3D H,H,C NOESY-1H,13C-HSQC sensitivity-enhanced (NOEs to H8-C8)' 3 isotropic 33 1 4 '3D H,H,C 13C-filtered NOESY-1H,13C-HSQC sensitivity-enhanced (NOEs to unlabeled H8-C8)' 3 isotropic 34 1 4 '3D H,H,C 13C-filtered NOESY-1H,13C-HSQC sensitivity-enhanced (NOEs to unlabeled Ribose)' 3 isotropic 35 1 4 '3D HCCH-TOCSY' 3 isotropic 36 1 4 '3D HCCH-COSY' 3 isotropic 37 1 4 '2D 1H-13C HSQC constant-time' 3 isotropic 38 1 4 '3D HCP sensitivity-enhanced' 2 isotropic 39 1 2 '2D 1H-1H NOESY (200 ms mix. time)' 2 isotropic 40 1 2 '2D 1H-1H NOESY (350 ms mix. time)' 2 isotropic 41 1 2 '2D 1H-1H TOCSY' 2 isotropic 42 1 1 '2D 1H-1H NOESY' 2 isotropic 43 1 7 '2D 1H-1H NOESY' 4 isotropic 44 1 7 '2D 1H-1H TOCSY' 4 isotropic 45 2 7 '2D 1H-1H NOESY' 4 isotropic 46 2 7 '2D 1H-1H TOCSY' 4 isotropic 47 1 8 '2D 1H-1H NOESY' 4 isotropic 48 1 8 '2D 1H-1H TOCSY' 4 isotropic 49 2 8 '2D 1H-1H NOESY' 4 isotropic 50 2 8 '2D 1H-1H TOCSY' 4 isotropic 51 1 9 '2D 1H-1H NOESY' 4 isotropic 52 1 9 '2D 1H-1H TOCSY' 4 isotropic 53 2 9 '2D 1H-1H NOESY' 4 isotropic 54 2 9 '2D 1H-1H TOCSY' 3 isotropic 55 1 10 '2D 1H-1H NOESY' 4 isotropic 56 1 10 '2D 1H-1H TOCSY' 4 isotropic 57 2 10 '2D 1H-1H NOESY' 4 isotropic 58 2 10 '2D 1H-1H TOCSY' 4 isotropic 59 1 11 '2D 1H-1H NOESY' 1 isotropic 60 2 11 '2D 1H-1H NOESY' 1 isotropic 61 1 12 '2D 1H-1H NOESY' 1 isotropic 62 2 12 '2D 1H-1H NOESY' 1 isotropic 63 1 13 '2D 1H-1H NOESY' 2 isotropic 64 1 4 '2D 1H-13C HSQC sensitivity-enhanced CC decoupled' 3 isotropic 65 1 6 '2D 1H-13C HSQC sensitivity-enhanced CC decoupled' 3 isotropic 66 1 3 '2D 1H-15N HSQC long-range (H8-N7)' 4 isotropic 67 1 5 '2D 13C-15N CON (C2-N1)' 1 isotropic 68 1 5 '2D 13C-15N CON (C2-N3)' 1 isotropic 69 1 5 '2D 1H-13C HN(CA)CO (H3-C2)' 1 isotropic 70 1 14 '2D ARTSY' 3 anisotropic 71 1 15 '2D ARTSY' 3 anisotropic # _pdbx_nmr_refine.entry_id 8TNS _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details 'SAXS and RDC were used during refinement' _pdbx_nmr_refine.software_ordinal 8 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection VnmrJ '4.2 revision A' Agilent 2 collection TopSpin 3.5 'Bruker Biospin' 3 'data analysis' 'MestreLab (Mnova / MestReNova / MestReC)' 14.3.1-31739 'Mestrelab Research' 4 'peak picking' NMRFAM-SPARKY 1.470 NMRFAM 5 'chemical shift assignment' NMRFAM-SPARKY 1.470 NMRFAM 6 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 7 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 8 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal G OP3 O N N 1 G P P N N 2 G OP1 O N N 3 G OP2 O N N 4 G "O5'" O N N 5 G "C5'" C N N 6 G "C4'" C N R 7 G "O4'" O N N 8 G "C3'" C N S 9 G "O3'" O N N 10 G "C2'" C N R 11 G "O2'" O N N 12 G "C1'" C N R 13 G N9 N Y N 14 G C8 C Y N 15 G N7 N Y N 16 G C5 C Y N 17 G C6 C N N 18 G O6 O N N 19 G N1 N N N 20 G C2 C N N 21 G N2 N N N 22 G N3 N N N 23 G C4 C Y N 24 G HOP3 H N N 25 G HOP2 H N N 26 G "H5'" H N N 27 G "H5''" H N N 28 G "H4'" H N N 29 G "H3'" H N N 30 G "HO3'" H N N 31 G "H2'" H N N 32 G "HO2'" H N N 33 G "H1'" H N N 34 G H8 H N N 35 G H1 H N N 36 G H21 H N N 37 G H22 H N N 38 U OP3 O N N 39 U P P N N 40 U OP1 O N N 41 U OP2 O N N 42 U "O5'" O N N 43 U "C5'" C N N 44 U "C4'" C N R 45 U "O4'" O N N 46 U "C3'" C N S 47 U "O3'" O N N 48 U "C2'" C N R 49 U "O2'" O N N 50 U "C1'" C N R 51 U N1 N N N 52 U C2 C N N 53 U O2 O N N 54 U N3 N N N 55 U C4 C N N 56 U O4 O N N 57 U C5 C N N 58 U C6 C N N 59 U HOP3 H N N 60 U HOP2 H N N 61 U "H5'" H N N 62 U "H5''" H N N 63 U "H4'" H N N 64 U "H3'" H N N 65 U "HO3'" H N N 66 U "H2'" H N N 67 U "HO2'" H N N 68 U "H1'" H N N 69 U H3 H N N 70 U H5 H N N 71 U H6 H N N 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G OP3 P sing N N 1 G OP3 HOP3 sing N N 2 G P OP1 doub N N 3 G P OP2 sing N N 4 G P "O5'" sing N N 5 G OP2 HOP2 sing N N 6 G "O5'" "C5'" sing N N 7 G "C5'" "C4'" sing N N 8 G "C5'" "H5'" sing N N 9 G "C5'" "H5''" sing N N 10 G "C4'" "O4'" sing N N 11 G "C4'" "C3'" sing N N 12 G "C4'" "H4'" sing N N 13 G "O4'" "C1'" sing N N 14 G "C3'" "O3'" sing N N 15 G "C3'" "C2'" sing N N 16 G "C3'" "H3'" sing N N 17 G "O3'" "HO3'" sing N N 18 G "C2'" "O2'" sing N N 19 G "C2'" "C1'" sing N N 20 G "C2'" "H2'" sing N N 21 G "O2'" "HO2'" sing N N 22 G "C1'" N9 sing N N 23 G "C1'" "H1'" sing N N 24 G N9 C8 sing Y N 25 G N9 C4 sing Y N 26 G C8 N7 doub Y N 27 G C8 H8 sing N N 28 G N7 C5 sing Y N 29 G C5 C6 sing N N 30 G C5 C4 doub Y N 31 G C6 O6 doub N N 32 G C6 N1 sing N N 33 G N1 C2 sing N N 34 G N1 H1 sing N N 35 G C2 N2 sing N N 36 G C2 N3 doub N N 37 G N2 H21 sing N N 38 G N2 H22 sing N N 39 G N3 C4 sing N N 40 U OP3 P sing N N 41 U OP3 HOP3 sing N N 42 U P OP1 doub N N 43 U P OP2 sing N N 44 U P "O5'" sing N N 45 U OP2 HOP2 sing N N 46 U "O5'" "C5'" sing N N 47 U "C5'" "C4'" sing N N 48 U "C5'" "H5'" sing N N 49 U "C5'" "H5''" sing N N 50 U "C4'" "O4'" sing N N 51 U "C4'" "C3'" sing N N 52 U "C4'" "H4'" sing N N 53 U "O4'" "C1'" sing N N 54 U "C3'" "O3'" sing N N 55 U "C3'" "C2'" sing N N 56 U "C3'" "H3'" sing N N 57 U "O3'" "HO3'" sing N N 58 U "C2'" "O2'" sing N N 59 U "C2'" "C1'" sing N N 60 U "C2'" "H2'" sing N N 61 U "O2'" "HO2'" sing N N 62 U "C1'" N1 sing N N 63 U "C1'" "H1'" sing N N 64 U N1 C2 sing N N 65 U N1 C6 sing N N 66 U C2 O2 doub N N 67 U C2 N3 sing N N 68 U N3 C4 sing N N 69 U N3 H3 sing N N 70 U C4 O4 doub N N 71 U C4 C5 sing N N 72 U C5 C6 doub N N 73 U C5 H5 sing N N 74 U C6 H6 sing N N 75 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8TNS 'double helix' 8TNS 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 17 1_555 A G 11 1_555 -1.832 -3.904 0.039 2.418 0.060 89.507 1 A_G17:G11_A A 17 ? A 11 ? 6 3 1 A U 10 1_555 A U 16 1_555 -0.786 -3.417 0.117 -1.916 2.216 85.855 2 A_U10:U16_A A 10 ? A 16 ? ? ? 1 A U 4 1_555 A U 22 1_555 0.581 3.536 0.007 0.113 -0.441 -91.957 3 A_U4:U22_A A 4 ? A 22 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 17 1_555 A G 11 1_555 A U 10 1_555 A U 16 1_555 -1.890 -3.973 -1.231 58.026 -168.337 107.334 -2.043 0.926 0.869 -84.347 -29.075 178.849 1 AA_G17U10:U16G11_AA A 17 ? A 11 ? A 10 ? A 16 ? 1 A U 10 1_555 A U 16 1_555 A U 4 1_555 A U 22 1_555 -0.552 -3.541 0.058 -0.536 1.740 177.800 -1.771 0.276 0.057 0.870 0.268 177.800 2 AA_U10U4:U22U16_AA A 10 ? A 16 ? A 4 ? A 22 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III HD' ? Bruker 750 ? 2 'AVANCE III' ? Bruker 600 ? 3 'VNMRS DD' ? Varian 600 ? 4 'VNMRS DD' ? Varian 800 ? # _pdbx_soln_scatter.id 1 _pdbx_soln_scatter.type x-ray _pdbx_soln_scatter.source_type 'ADVANCE PHOTON SOURCE' _pdbx_soln_scatter.source_class Y _pdbx_soln_scatter.source_beamline APS _pdbx_soln_scatter.source_beamline_instrument 12-ID-B _pdbx_soln_scatter.detector_type 'PILATUS 2M AND PILATUS 300K' _pdbx_soln_scatter.detector_specific ? _pdbx_soln_scatter.temperature 295 _pdbx_soln_scatter.sample_pH 7.0 _pdbx_soln_scatter.num_time_frames 60 _pdbx_soln_scatter.concentration_range 0.26-1.6 _pdbx_soln_scatter.buffer_name HEPES _pdbx_soln_scatter.data_reduction_software_list 'IN-HOUSE SOFTWARE' _pdbx_soln_scatter.data_analysis_software_list ATSAS _pdbx_soln_scatter.mean_guiner_radius 1.3 _pdbx_soln_scatter.mean_guiner_radius_esd 0.007 _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.protein_length 4.7 _pdbx_soln_scatter.entry_id 8TNS # _pdbx_soln_scatter_model.scatter_id 1 _pdbx_soln_scatter_model.id 1 _pdbx_soln_scatter_model.method 'HIGH TEMPERATURE DYNAMICS AT 3000 K, FOLLOWED BY SUMULATED ANNEALING FROM 3000 K TO 25 K AND A FINAL ENERGY MINIMIZATION STEP.' _pdbx_soln_scatter_model.software_list X-PLOR_NIH _pdbx_soln_scatter_model.software_author_list 'SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE' _pdbx_soln_scatter_model.entry_fitting_list ? _pdbx_soln_scatter_model.num_conformers_calculated 100 _pdbx_soln_scatter_model.num_conformers_submitted 20 _pdbx_soln_scatter_model.conformer_selection_criteria 'LEAST RESTRAINT VIOLATIONS' _pdbx_soln_scatter_model.details 'STARTING MODEL WAS BEST MODEL OBTAINED AFTER CALCULATIONS WITHOUT RDC AND SCATTERING DATA.' _pdbx_soln_scatter_model.representative_conformer 1 # _atom_sites.entry_id 8TNS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_