HEADER TRANSCRIPTION/DNA 04-AUG-23 8TPK TITLE P6522 CRYSTAL FORM OF C. CRESCENTUS DRID-SSDNA-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOR-FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*GP*TP*C)-3'); COMPND 7 CHAIN: L, Y; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(*AP*TP*AP*CP*GP*AP*CP*AP*GP*TP*TP*AP*CP*TP*GP*TP*CP*GP*TP*AP*T)- COMPND 12 3'); COMPND 13 CHAIN: U; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(*AP*TP*AP*CP*GP*AP*CP*AP*GP*TP*AP*AP*CP*TP*GP*TP*CP*GP*TP*AP*T)- COMPND 18 3'); COMPND 19 CHAIN: R; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES NA1000; SOURCE 3 ORGANISM_TAXID: 565050; SOURCE 4 GENE: CCNA_01151; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 10 ORGANISM_TAXID: 155892; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS DRID, DNA REPAIR, SSDNA, .C CRESCENTUS, TRANSCRIPTION ACTIVATION, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 4 13-MAR-24 8TPK 1 SOURCE REVDAT 3 21-FEB-24 8TPK 1 JRNL REVDAT 2 10-JAN-24 8TPK 1 JRNL REVDAT 1 29-NOV-23 8TPK 0 JRNL AUTH M.A.SCHUMACHER,E.CANNISTRACI,R.SALINAS,D.LLOYD,E.MESSNER, JRNL AUTH 2 K.GOZZI JRNL TITL STRUCTURE OF THE WYL-DOMAIN CONTAINING TRANSCRIPTION JRNL TITL 2 ACTIVATOR, DRID, IN COMPLEX WITH SSDNA EFFECTOR AND DNA JRNL TITL 3 TARGET SITE. JRNL REF NUCLEIC ACIDS RES. V. 52 1435 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38142455 JRNL DOI 10.1093/NAR/GKAD1198 REMARK 2 REMARK 2 RESOLUTION. 3.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 14675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3000 - 7.4500 0.86 1383 154 0.1958 0.2507 REMARK 3 2 7.4400 - 5.9100 0.89 1335 149 0.2458 0.2948 REMARK 3 3 5.9100 - 5.1700 0.91 1327 147 0.2781 0.3056 REMARK 3 4 5.1700 - 4.7000 0.90 1305 146 0.2738 0.3139 REMARK 3 5 4.6900 - 4.3600 0.93 1323 147 0.2851 0.3240 REMARK 3 6 4.3600 - 4.1000 0.92 1310 145 0.2921 0.2853 REMARK 3 7 4.1000 - 3.9000 0.91 1303 145 0.3151 0.3433 REMARK 3 8 3.9000 - 3.7300 0.94 1321 146 0.3306 0.3825 REMARK 3 9 3.7300 - 3.5800 0.93 1309 146 0.3391 0.4308 REMARK 3 10 3.5800 - 3.4600 0.92 1290 144 0.3675 0.4338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6038 REMARK 3 ANGLE : 0.825 8378 REMARK 3 CHIRALITY : 0.046 936 REMARK 3 PLANARITY : 0.006 942 REMARK 3 DIHEDRAL : 22.567 1161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.9079 19.3161 -15.0830 REMARK 3 T TENSOR REMARK 3 T11: 1.9944 T22: 0.8049 REMARK 3 T33: 1.1517 T12: 0.0070 REMARK 3 T13: -0.3421 T23: 0.1355 REMARK 3 L TENSOR REMARK 3 L11: 3.6559 L22: 0.5626 REMARK 3 L33: 1.7776 L12: 0.5647 REMARK 3 L13: -0.6651 L23: -0.0991 REMARK 3 S TENSOR REMARK 3 S11: -0.9803 S12: 0.3176 S13: 0.5038 REMARK 3 S21: -0.2642 S22: 0.5040 S23: 0.0343 REMARK 3 S31: 0.0943 S32: 0.2516 S33: 0.4349 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14675 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.460 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULPHATE, 0.1 M TRIS PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 200.18400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.09200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 150.13800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.04600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 250.23000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 200.18400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 100.09200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.04600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 150.13800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 250.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, Y, U, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 68 REMARK 465 GLY A 69 REMARK 465 LEU A 70 REMARK 465 ASP A 71 REMARK 465 GLY A 72 REMARK 465 VAL A 73 REMARK 465 PHE A 74 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 DT U 21 REMARK 465 DA R 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 PRO A 67 CG CD REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 MET B 28 CG SD CE REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 HIS B 139 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 261 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 327 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP B 327 CZ2 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N4 DC U 13 O6 DG R 9 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 148 CB - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG B 2 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ALA B 153 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 DT U 11 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT U 16 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT R 2 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 60 41.63 -105.96 REMARK 500 THR A 76 74.32 44.74 REMARK 500 GLU A 169 58.63 -97.80 REMARK 500 SER A 172 -3.51 64.96 REMARK 500 THR A 173 50.08 -140.86 REMARK 500 ILE A 239 -61.12 -126.40 REMARK 500 ASP A 242 -167.41 -79.77 REMARK 500 GLU A 273 -164.94 -124.98 REMARK 500 ALA A 274 -36.81 -142.61 REMARK 500 SER A 277 -167.93 -76.90 REMARK 500 VAL A 304 -60.75 -103.82 REMARK 500 PRO A 306 -158.97 -75.73 REMARK 500 ALA B 20 -8.05 72.16 REMARK 500 PRO B 51 0.73 -67.21 REMARK 500 ASP B 58 63.82 -158.14 REMARK 500 PRO B 60 47.32 -92.67 REMARK 500 LEU B 70 -169.07 -79.39 REMARK 500 LYS B 219 81.46 -162.57 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8TPK A 1 327 UNP A0A0H3C5Q6_CAUVN DBREF2 8TPK A A0A0H3C5Q6 1 327 DBREF1 8TPK B 1 327 UNP A0A0H3C5Q6_CAUVN DBREF2 8TPK B A0A0H3C5Q6 1 327 DBREF 8TPK L 18 20 PDB 8TPK 8TPK 18 20 DBREF 8TPK Y 18 20 PDB 8TPK 8TPK 18 20 DBREF 8TPK U 1 21 PDB 8TPK 8TPK 1 21 DBREF 8TPK R 1 21 PDB 8TPK 8TPK 1 21 SEQADV 8TPK MET A -19 UNP A0A0H3C5Q INITIATING METHIONINE SEQADV 8TPK GLY A -18 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER A -17 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER A -16 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS A -15 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS A -14 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS A -13 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS A -12 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS A -11 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS A -10 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER A -9 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER A -8 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK GLY A -7 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK LEU A -6 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK VAL A -5 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK PRO A -4 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK ARG A -3 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK GLY A -2 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER A -1 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS A 0 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK MET B -19 UNP A0A0H3C5Q INITIATING METHIONINE SEQADV 8TPK GLY B -18 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER B -17 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER B -16 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS B -15 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS B -14 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS B -13 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS B -12 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS B -11 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS B -10 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER B -9 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER B -8 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK GLY B -7 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK LEU B -6 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK VAL B -5 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK PRO B -4 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK ARG B -3 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK GLY B -2 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK SER B -1 UNP A0A0H3C5Q EXPRESSION TAG SEQADV 8TPK HIS B 0 UNP A0A0H3C5Q EXPRESSION TAG SEQRES 1 A 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 347 LEU VAL PRO ARG GLY SER HIS MET ARG HIS GLU LYS ALA SEQRES 3 A 347 THR ARG LEU LEU ASP LEU ALA ARG MET LEU ALA GLY SER SEQRES 4 A 347 ALA GLU GLY LEU THR LEU ASP GLU MET ALA ALA ALA LEU SEQRES 5 A 347 GLY VAL GLY ARG ARG THR ALA GLU ARG MET ARG ASP ALA SEQRES 6 A 347 VAL TRP ALA ALA PHE PRO GLN MET GLU ALA ILE ASP ASP SEQRES 7 A 347 PRO PRO THR LYS ARG PHE ARG ILE PRO SER GLY LEU ASP SEQRES 8 A 347 GLY VAL PHE GLN THR PRO THR ALA GLU GLU LEU ALA ALA SEQRES 9 A 347 LEU ARG VAL ALA ALA ASP SER LEU ARG ALA SER GLY ALA SEQRES 10 A 347 ASP ALA ARG ALA SER SER LEU TYR ALA LEU GLU ALA LYS SEQRES 11 A 347 LEU LEU SER ALA LEU ARG GLY SER ALA ARG ARG ARG VAL SEQRES 12 A 347 ALA PRO ASP VAL GLU ALA LEU VAL GLN ALA GLU THR ILE SEQRES 13 A 347 ALA VAL HIS ALA GLY PRO ARG PRO TYR GLU ASP GLN ALA SEQRES 14 A 347 VAL LEU GLY ALA ILE ARG ALA ALA ILE LYS GLY LEU GLN SEQRES 15 A 347 ALA LEU SER PHE ARG TYR GLU GLY GLY SER THR PRO GLY SEQRES 16 A 347 ARG THR ARG GLU VAL THR PRO LEU GLY VAL LEU PHE GLY SEQRES 17 A 347 ARG SER ASN TYR LEU VAL ALA LEU GLU GLY LYS GLY GLY SEQRES 18 A 347 LYS PRO ARG SER TRP ARG LEU ASP ARG MET SER ASP LEU SEQRES 19 A 347 LYS VAL LEU ASP LYS PRO ALA PRO PRO PRO GLN ASP PHE SEQRES 20 A 347 SER LEU GLN ALA PHE ALA ASP GLU SER PHE GLY ILE TYR SEQRES 21 A 347 HIS ASP GLU ILE GLN ASP VAL VAL LEU ARG ILE HIS LYS SEQRES 22 A 347 SER ARG ALA GLU ASP ALA LEU ARG TRP ARG PHE HIS ALA SEQRES 23 A 347 THR GLN GLN VAL THR PRO GLU ALA ASP GLY SER VAL LEU SEQRES 24 A 347 VAL THR PHE ARG ALA GLY GLY MET ARG GLU LEU SER TRP SEQRES 25 A 347 HIS LEU PHE THR TRP GLY ASP ALA VAL GLU ILE VAL ALA SEQRES 26 A 347 PRO GLN VAL LEU LYS ASP MET MET VAL GLN GLU LEU ARG SEQRES 27 A 347 GLU ALA GLY ARG ALA HIS GLY ALA TRP SEQRES 1 B 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 347 LEU VAL PRO ARG GLY SER HIS MET ARG HIS GLU LYS ALA SEQRES 3 B 347 THR ARG LEU LEU ASP LEU ALA ARG MET LEU ALA GLY SER SEQRES 4 B 347 ALA GLU GLY LEU THR LEU ASP GLU MET ALA ALA ALA LEU SEQRES 5 B 347 GLY VAL GLY ARG ARG THR ALA GLU ARG MET ARG ASP ALA SEQRES 6 B 347 VAL TRP ALA ALA PHE PRO GLN MET GLU ALA ILE ASP ASP SEQRES 7 B 347 PRO PRO THR LYS ARG PHE ARG ILE PRO SER GLY LEU ASP SEQRES 8 B 347 GLY VAL PHE GLN THR PRO THR ALA GLU GLU LEU ALA ALA SEQRES 9 B 347 LEU ARG VAL ALA ALA ASP SER LEU ARG ALA SER GLY ALA SEQRES 10 B 347 ASP ALA ARG ALA SER SER LEU TYR ALA LEU GLU ALA LYS SEQRES 11 B 347 LEU LEU SER ALA LEU ARG GLY SER ALA ARG ARG ARG VAL SEQRES 12 B 347 ALA PRO ASP VAL GLU ALA LEU VAL GLN ALA GLU THR ILE SEQRES 13 B 347 ALA VAL HIS ALA GLY PRO ARG PRO TYR GLU ASP GLN ALA SEQRES 14 B 347 VAL LEU GLY ALA ILE ARG ALA ALA ILE LYS GLY LEU GLN SEQRES 15 B 347 ALA LEU SER PHE ARG TYR GLU GLY GLY SER THR PRO GLY SEQRES 16 B 347 ARG THR ARG GLU VAL THR PRO LEU GLY VAL LEU PHE GLY SEQRES 17 B 347 ARG SER ASN TYR LEU VAL ALA LEU GLU GLY LYS GLY GLY SEQRES 18 B 347 LYS PRO ARG SER TRP ARG LEU ASP ARG MET SER ASP LEU SEQRES 19 B 347 LYS VAL LEU ASP LYS PRO ALA PRO PRO PRO GLN ASP PHE SEQRES 20 B 347 SER LEU GLN ALA PHE ALA ASP GLU SER PHE GLY ILE TYR SEQRES 21 B 347 HIS ASP GLU ILE GLN ASP VAL VAL LEU ARG ILE HIS LYS SEQRES 22 B 347 SER ARG ALA GLU ASP ALA LEU ARG TRP ARG PHE HIS ALA SEQRES 23 B 347 THR GLN GLN VAL THR PRO GLU ALA ASP GLY SER VAL LEU SEQRES 24 B 347 VAL THR PHE ARG ALA GLY GLY MET ARG GLU LEU SER TRP SEQRES 25 B 347 HIS LEU PHE THR TRP GLY ASP ALA VAL GLU ILE VAL ALA SEQRES 26 B 347 PRO GLN VAL LEU LYS ASP MET MET VAL GLN GLU LEU ARG SEQRES 27 B 347 GLU ALA GLY ARG ALA HIS GLY ALA TRP SEQRES 1 L 3 DG DT DC SEQRES 1 Y 3 DG DT DC SEQRES 1 U 21 DA DT DA DC DG DA DC DA DG DT DT DA DC SEQRES 2 U 21 DT DG DT DC DG DT DA DT SEQRES 1 R 21 DA DT DA DC DG DA DC DA DG DT DA DA DC SEQRES 2 R 21 DT DG DT DC DG DT DA DT HELIX 1 AA1 HIS A 3 ALA A 17 1 15 HELIX 2 AA2 THR A 24 LEU A 32 1 9 HELIX 3 AA3 GLY A 35 PHE A 50 1 16 HELIX 4 AA4 THR A 78 ALA A 94 1 17 HELIX 5 AA5 ALA A 97 ALA A 114 1 18 HELIX 6 AA6 ARG A 116 ARG A 121 1 6 HELIX 7 AA7 VAL A 123 GLN A 132 1 10 HELIX 8 AA8 LEU A 151 GLY A 160 1 10 HELIX 9 AA9 SER A 228 SER A 236 1 9 HELIX 10 AB1 LYS A 253 ARG A 255 5 3 HELIX 11 AB2 ALA A 256 ARG A 261 1 6 HELIX 12 AB3 GLY A 286 THR A 296 1 11 HELIX 13 AB4 GLN A 307 HIS A 324 1 18 HELIX 14 AB5 HIS B 3 GLY B 18 1 16 HELIX 15 AB6 LEU B 25 ALA B 30 1 6 HELIX 16 AB7 GLY B 35 ALA B 48 1 14 HELIX 17 AB8 ASP B 71 GLN B 75 5 5 HELIX 18 AB9 THR B 78 ALA B 94 1 17 HELIX 19 AC1 ALA B 97 ALA B 114 1 18 HELIX 20 AC2 ARG B 116 VAL B 123 1 8 HELIX 21 AC3 ALA B 124 ALA B 133 1 10 HELIX 22 AC4 ASP B 147 ILE B 158 1 12 HELIX 23 AC5 ASP B 209 MET B 211 5 3 HELIX 24 AC6 SER B 228 ASP B 234 1 7 HELIX 25 AC7 ARG B 255 ARG B 261 1 7 HELIX 26 AC8 GLY B 286 THR B 296 1 11 HELIX 27 AC9 GLN B 307 ALA B 320 1 14 SHEET 1 AA1 4 GLU A 134 ILE A 136 0 SHEET 2 AA1 4 THR B 177 PHE B 187 1 O VAL B 185 N THR A 135 SHEET 3 AA1 4 ASN B 191 GLU B 197 -1 O LEU B 196 N THR B 181 SHEET 4 AA1 4 ARG B 204 ARG B 207 -1 O TRP B 206 N LEU B 193 SHEET 1 AA2 4 GLU A 134 ILE A 136 0 SHEET 2 AA2 4 THR B 177 PHE B 187 1 O VAL B 185 N THR A 135 SHEET 3 AA2 4 LEU B 164 ARG B 167 -1 N LEU B 164 O VAL B 180 SHEET 4 AA2 4 SER B 212 LYS B 215 -1 O SER B 212 N ARG B 167 SHEET 1 AA3 2 GLY A 141 PRO A 142 0 SHEET 2 AA3 2 TRP B 262 ARG B 263 -1 O ARG B 263 N GLY A 141 SHEET 1 AA4 5 ARG A 204 ARG A 207 0 SHEET 2 AA4 5 ASN A 191 LEU A 196 -1 N LEU A 193 O TRP A 206 SHEET 3 AA4 5 THR A 177 PHE A 187 -1 N GLY A 184 O VAL A 194 SHEET 4 AA4 5 ALA A 163 TYR A 168 -1 N PHE A 166 O ARG A 178 SHEET 5 AA4 5 MET A 211 LEU A 217 -1 O LEU A 217 N ALA A 163 SHEET 1 AA5 4 ARG A 204 ARG A 207 0 SHEET 2 AA5 4 ASN A 191 LEU A 196 -1 N LEU A 193 O TRP A 206 SHEET 3 AA5 4 THR A 177 PHE A 187 -1 N GLY A 184 O VAL A 194 SHEET 4 AA5 4 GLU B 134 ILE B 136 1 O THR B 135 N PHE A 187 SHEET 1 AA6 4 GLN A 269 PRO A 272 0 SHEET 2 AA6 4 VAL A 278 ARG A 283 -1 O THR A 281 N GLN A 269 SHEET 3 AA6 4 ASP A 246 ILE A 251 -1 N LEU A 249 O VAL A 280 SHEET 4 AA6 4 VAL A 301 ALA A 305 -1 O ALA A 305 N VAL A 248 SHEET 1 AA7 3 LEU B 23 THR B 24 0 SHEET 2 AA7 3 THR B 61 ARG B 65 -1 O PHE B 64 N LEU B 23 SHEET 3 AA7 3 GLU B 54 ASP B 58 -1 N GLU B 54 O ARG B 65 SHEET 1 AA8 4 GLN B 269 PRO B 272 0 SHEET 2 AA8 4 VAL B 278 ALA B 284 -1 O THR B 281 N GLN B 269 SHEET 3 AA8 4 GLN B 245 ILE B 251 -1 N ILE B 251 O VAL B 278 SHEET 4 AA8 4 VAL B 301 ALA B 305 -1 O ALA B 305 N VAL B 248 CISPEP 1 PRO A 59 PRO A 60 0 -7.40 CISPEP 2 ALA A 305 PRO A 306 0 -5.34 CISPEP 3 PRO B 59 PRO B 60 0 12.34 CISPEP 4 ALA B 305 PRO B 306 0 0.97 CRYST1 115.094 115.094 300.276 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008689 0.005016 0.000000 0.00000 SCALE2 0.000000 0.010033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003330 0.00000