HEADER BLOOD CLOTTING 08-AUG-23 8TQS TITLE COMPLEX OF HUMAN THROMBIN (S195A) BOUND TO A BIVALENT INHIBITOR TITLE 2 COMPRISED OF DNA APTAMER HD22 CONJUGATED TO DABIGATRAN WITH A LINKER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (30-MER); COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HD22 APTAMER WITH 7A EXTENSION AT 5' END; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTHROMBIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: F2; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: F2; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HUMAN THROMBIN, DNA APTAMER, DABIGATRAN, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR S.KRISHNASWAMY,S.KUMAR REVDAT 2 22-MAY-24 8TQS 1 JRNL REVDAT 1 01-MAY-24 8TQS 0 JRNL AUTH H.YU,S.KUMAR,J.W.FREDERIKSEN,V.N.KOLYADKO,G.PITOC,J.LAYZER, JRNL AUTH 2 A.YAN,R.REMPEL,S.FRANCIS,S.KRISHNASWAMY,B.A.SULLENGER JRNL TITL APTAMERIC HIRUDINS AS SELECTIVE AND REVERSIBLE JRNL TITL 2 EXOSITE-ACTIVE SITE (EXACT) INHIBITORS. JRNL REF NAT COMMUN V. 15 3977 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38730234 JRNL DOI 10.1038/S41467-024-48211-6 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.056 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2079 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.4890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2371 REMARK 3 NUCLEIC ACID ATOMS : 629 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80500 REMARK 3 B22 (A**2) : -0.80500 REMARK 3 B33 (A**2) : 1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3199 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2670 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4458 ; 1.066 ; 1.711 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6178 ; 0.347 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 6.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ; 4.746 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 426 ;13.161 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3322 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 710 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 589 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 38 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1407 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.256 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.095 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1165 ; 3.030 ; 3.012 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1165 ; 3.028 ; 3.012 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1451 ; 4.390 ; 5.408 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1452 ; 4.390 ; 5.409 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2034 ; 4.994 ; 3.902 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2035 ; 4.993 ; 3.907 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3007 ; 7.576 ; 6.989 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3008 ; 7.575 ; 6.992 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 36 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1500 7.3550 40.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.6175 T22: 0.9867 REMARK 3 T33: 0.3632 T12: 0.1070 REMARK 3 T13: -0.1387 T23: 0.0769 REMARK 3 L TENSOR REMARK 3 L11: 5.6452 L22: 4.8677 REMARK 3 L33: 5.8235 L12: 2.5330 REMARK 3 L13: 0.5011 L23: 1.7260 REMARK 3 S TENSOR REMARK 3 S11: 0.1778 S12: -0.4990 S13: -1.0288 REMARK 3 S21: 0.7010 S22: 0.1218 S23: -1.2592 REMARK 3 S31: 0.8657 S32: 0.9431 S33: -0.2996 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -10.5680 17.3280 23.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.5805 T22: 0.3910 REMARK 3 T33: 0.0260 T12: -0.0521 REMARK 3 T13: 0.0074 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 4.2285 L22: 2.3219 REMARK 3 L33: 3.2506 L12: -0.7080 REMARK 3 L13: 0.2377 L23: 0.4779 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 0.3358 S13: 0.2867 REMARK 3 S21: -0.4068 S22: 0.0007 S23: -0.1463 REMARK 3 S31: -0.1270 S32: 0.4804 S33: -0.0321 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -24.6020 8.7220 25.6030 REMARK 3 T TENSOR REMARK 3 T11: 0.5437 T22: 0.3856 REMARK 3 T33: 0.1566 T12: -0.0735 REMARK 3 T13: -0.0863 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.5671 L22: 3.1893 REMARK 3 L33: 4.4999 L12: -1.3744 REMARK 3 L13: -0.7818 L23: 0.7138 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: 0.2215 S13: -0.4366 REMARK 3 S21: -0.2537 S22: -0.0507 S23: 0.4577 REMARK 3 S31: 0.5670 S32: -0.1964 S33: -0.0260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8TQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000275845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979354 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33265 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : 5.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE PH 6, 22% (V/V) REMARK 280 POLYETHYLENE GLYCOL 400 (HAMPTON PEGRX1 #08), PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.25700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.81300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.81300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.62850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.81300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.81300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.88550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.81300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.81300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.62850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.81300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.81300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 142.88550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.25700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H 146A REMARK 465 TRP H 146B REMARK 465 THR H 146C REMARK 465 ALA H 146D REMARK 465 ASN H 146E REMARK 465 VAL H 146F REMARK 465 GLY H 146G REMARK 465 LYS H 146H REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS H 240 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 21 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG D 24 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 50 4.33 -151.64 REMARK 500 TYR H 60A 87.37 -150.33 REMARK 500 ASP H 60E 51.10 35.04 REMARK 500 THR H 74 -81.50 -94.70 REMARK 500 ILE H 79 -59.01 -135.05 REMARK 500 ASN H 98 8.79 -154.64 REMARK 500 PHE L 7 -83.07 -125.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG H 304 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG D 15 O6 REMARK 620 2 DG D 16 O6 72.4 REMARK 620 3 DG D 19 O6 99.7 81.4 REMARK 620 4 DG D 25 O6 146.1 141.1 84.5 REMARK 620 5 DG D 28 O6 99.8 82.7 149.7 92.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG H 221A O REMARK 620 2 LYS H 224 O 76.8 REMARK 620 3 HOH H 402 O 129.8 79.8 REMARK 620 4 HOH H 404 O 80.9 141.7 91.5 REMARK 620 N 1 2 3 DBREF 8TQS D 7 36 PDB 8TQS 8TQS 7 36 DBREF 8TQS H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 8TQS L 1 14K UNP P00734 THRB_HUMAN 320 360 SEQADV 8TQS ALA H 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQRES 1 D 30 DA DA DG DT DC DC DG DT DG DG DT DA DG SEQRES 2 D 30 DG DG DC DA DG DG DT DT DG DG DG DG DT SEQRES 3 D 30 DG DA DC DT SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP ALA GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 L 41 TYR GLN THR PHE PHE ASN PRO ARG THR PHE GLY SER GLY SEQRES 2 L 41 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 3 L 41 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 4 L 41 TYR ILE HET MG D 101 1 HET NA H 301 1 HET MES H 302 12 HET 4CC H 303 35 HET NAG H 304 14 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM 4CC N-[(2-{[(4-CARBAMIMIDOYLPHENYL)AMINO]METHYL}-1-METHYL- HETNAM 2 4CC 1H-BENZIMIDAZOL-5-YL)CARBONYL]-N-PYRIDIN-2-YL-BETA- HETNAM 3 4CC ALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 MG MG 2+ FORMUL 5 NA NA 1+ FORMUL 6 MES C6 H13 N O4 S FORMUL 7 4CC C25 H25 N7 O3 FORMUL 8 NAG C8 H15 N O6 FORMUL 9 HOH *14(H2 O) HELIX 1 AA1 ALA H 55 CYS H 58 5 4 HELIX 2 AA2 PRO H 60B ASP H 60E 5 4 HELIX 3 AA3 THR H 60I ASN H 62 5 3 HELIX 4 AA4 ASP H 125 LEU H 130 1 9 HELIX 5 AA5 GLU H 164 SER H 171 1 8 HELIX 6 AA6 LYS H 185 GLY H 186C 5 5 HELIX 7 AA7 LEU H 234 GLY H 246 1 13 HELIX 8 AA8 ASN L 1E GLY L 1J 1 6 HELIX 9 AA9 PHE L 7 SER L 11 5 5 HELIX 10 AB1 THR L 14B TYR L 14J 1 9 SHEET 1 AA1 7 SER H 20 ASP H 21 0 SHEET 2 AA1 7 GLN H 156 PRO H 161 -1 O VAL H 157 N SER H 20 SHEET 3 AA1 7 LYS H 135 GLY H 140 -1 N VAL H 138 O VAL H 158 SHEET 4 AA1 7 PRO H 198 LYS H 202 -1 O VAL H 200 N ARG H 137 SHEET 5 AA1 7 TRP H 207 TRP H 215 -1 O TYR H 208 N MET H 201 SHEET 6 AA1 7 GLY H 226 HIS H 230 -1 O PHE H 227 N TRP H 215 SHEET 7 AA1 7 MET H 180 ALA H 183 -1 N PHE H 181 O TYR H 228 SHEET 1 AA2 7 LYS H 81 SER H 83 0 SHEET 2 AA2 7 LEU H 64 ILE H 68 -1 N ILE H 68 O LYS H 81 SHEET 3 AA2 7 GLN H 30 ARG H 35 -1 N PHE H 34 O LEU H 65 SHEET 4 AA2 7 GLU H 39 LEU H 46 -1 O LEU H 41 N LEU H 33 SHEET 5 AA2 7 TRP H 51 THR H 54 -1 O LEU H 53 N SER H 45 SHEET 6 AA2 7 ALA H 104 LEU H 108 -1 O MET H 106 N VAL H 52 SHEET 7 AA2 7 LEU H 85 ILE H 90 -1 N GLU H 86 O LYS H 107 SHEET 1 AA3 2 LEU H 60 TYR H 60A 0 SHEET 2 AA3 2 LYS H 60F ASN H 60G-1 O LYS H 60F N TYR H 60A SSBOND 1 CYS H 42 CYS H 58 1555 1555 2.32 SSBOND 2 CYS H 122 CYS L 1P 1555 1555 2.35 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.22 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.68 LINK O6 DG D 15 MG MG D 101 1555 1555 2.74 LINK O6 DG D 16 MG MG D 101 1555 1555 2.45 LINK O6 DG D 19 MG MG D 101 1555 1555 2.25 LINK O6 DG D 25 MG MG D 101 1555 1555 2.39 LINK O6 DG D 28 MG MG D 101 1555 1555 2.18 LINK O ARG H 221A NA NA H 301 1555 1555 2.93 LINK O LYS H 224 NA NA H 301 1555 1555 2.28 LINK NA NA H 301 O HOH H 402 1555 1555 2.37 LINK NA NA H 301 O HOH H 404 1555 1555 2.50 CISPEP 1 SER H 36A PRO H 37 0 -5.08 CRYST1 81.626 81.626 190.514 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005249 0.00000