HEADER SIGNALING PROTEIN 11-AUG-23 8TSM TITLE CRYSTAL STRUCTURE OF CHICKEN NETRIN-1 LN LE1-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-405; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: NTN1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS EXTRACELLULAR MATRIX PROTEIN, APOPTOSIS, AXON GUIDANCE, NEURONAL KEYWDS 2 DEVELOPMENT, CELL SIGNALING, HEPARAN SULFATE BINDING PROTEIN, KEYWDS 3 DEPENDENCE RECEPTORS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.HEIDE,F.RAFIEI,J.STETEFELD REVDAT 1 28-AUG-24 8TSM 0 JRNL AUTH F.RAFIEI,F.HEIDE,S.LEGARE,H.GABIR,P.PADILLA-MEIER,M.MEIER, JRNL AUTH 2 M.KOCH,J.STETEFELD JRNL TITL INVESTIGATION OF THE DYNAMIC NATURE OF NETRIN-1 ON JRNL TITL 2 DEPENDENCE RECEPTOR SIGNALING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 13196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.312 REMARK 3 R VALUE (WORKING SET) : 0.312 REMARK 3 FREE R VALUE : 0.319 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7700 - 7.4500 0.99 1785 142 0.2329 0.2430 REMARK 3 2 7.4300 - 5.9200 0.99 1784 128 0.3292 0.3410 REMARK 3 3 5.9100 - 5.1700 0.99 1754 157 0.3479 0.3923 REMARK 3 4 5.1700 - 4.7000 0.97 1707 175 0.3619 0.3429 REMARK 3 5 4.7000 - 4.3600 0.97 1705 165 0.3856 0.3645 REMARK 3 6 4.3600 - 4.1100 0.98 1738 146 0.4260 0.4015 REMARK 3 7 4.1100 - 3.9000 0.94 1682 128 0.4862 0.4224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 47.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 155.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 216.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2920 REMARK 3 ANGLE : 0.930 3950 REMARK 3 CHIRALITY : 0.054 416 REMARK 3 PLANARITY : 0.035 519 REMARK 3 DIHEDRAL : 8.318 406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 40 THROUGH 405) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4148 -33.8144 -19.7101 REMARK 3 T TENSOR REMARK 3 T11: 1.1954 T22: 1.3563 REMARK 3 T33: 1.0146 T12: 0.0701 REMARK 3 T13: 0.0407 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 0.2748 L22: 0.8794 REMARK 3 L33: 0.8163 L12: 0.0881 REMARK 3 L13: 0.2400 L23: -0.2897 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.3941 S13: 0.0214 REMARK 3 S21: -0.0213 S22: -0.1141 S23: 0.1518 REMARK 3 S31: 0.0612 S32: 0.0432 S33: -0.1883 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000276566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13196 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1-4487_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM PHOSPHATE DIBASIC REMARK 280 DIHYDRATE, 20% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 56.20650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.32200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.66100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.20650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 181.98300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 181.98300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.20650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.66100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 56.20650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.32200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 56.20650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 121.32200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 56.20650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 181.98300 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.66100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.20650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.66100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 181.98300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 56.20650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 56.20650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 121.32200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 LEU A 24 REMARK 465 ALA A 25 REMARK 465 GLY A 26 REMARK 465 TYR A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 ASN A 31 REMARK 465 MET A 32 REMARK 465 PHE A 33 REMARK 465 ALA A 34 REMARK 465 VAL A 35 REMARK 465 GLN A 36 REMARK 465 THR A 37 REMARK 465 ALA A 38 REMARK 465 GLN A 39 REMARK 465 GLY A 260 REMARK 465 ASP A 261 REMARK 465 GLU A 262 REMARK 465 ASN A 263 REMARK 465 GLU A 264 REMARK 465 ASP A 265 REMARK 465 ASP A 266 REMARK 465 SER A 267 REMARK 465 GLU A 268 REMARK 465 LEU A 269 REMARK 465 ALA A 270 REMARK 465 ARG A 271 REMARK 465 GLY A 406 REMARK 465 SER A 407 REMARK 465 SER A 408 REMARK 465 GLY A 409 REMARK 465 GLY A 410 REMARK 465 GLY A 411 REMARK 465 LEU A 412 REMARK 465 VAL A 413 REMARK 465 PRO A 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 348 H ARG A 374 1.45 REMARK 500 O GLU A 357 H LEU A 361 1.53 REMARK 500 H ARG A 192 O CYS A 205 1.55 REMARK 500 OD2 ASP A 168 HG1 THR A 172 1.58 REMARK 500 O PHE A 234 HE21 GLN A 241 1.59 REMARK 500 O SER A 166 OG1 THR A 247 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 208 OD2 ASP A 211 8555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 97.67 -37.25 REMARK 500 HIS A 47 56.64 -95.53 REMARK 500 PRO A 55 -163.79 -68.42 REMARK 500 SER A 70 132.26 -171.30 REMARK 500 PRO A 116 3.12 -60.99 REMARK 500 HIS A 117 -75.65 -102.01 REMARK 500 ASN A 118 80.97 -68.23 REMARK 500 SER A 126 178.46 -59.27 REMARK 500 PRO A 131 50.99 -95.99 REMARK 500 ASN A 133 96.52 -60.54 REMARK 500 TYR A 169 65.03 65.84 REMARK 500 GLN A 177 140.72 -174.33 REMARK 500 SER A 180 118.62 -175.03 REMARK 500 MET A 186 -70.67 -54.27 REMARK 500 ASN A 188 -0.57 61.95 REMARK 500 ARG A 192 65.45 65.94 REMARK 500 THR A 196 -165.12 -106.96 REMARK 500 ASP A 207 16.79 -150.12 REMARK 500 LEU A 256 -136.89 -93.14 REMARK 500 THR A 258 33.95 -99.11 REMARK 500 LYS A 288 95.40 -62.32 REMARK 500 ARG A 295 144.39 -177.27 REMARK 500 ASP A 299 -130.17 -109.13 REMARK 500 ARG A 300 -80.49 -72.79 REMARK 500 ASP A 301 36.16 -77.59 REMARK 500 ASP A 302 87.45 54.06 REMARK 500 ASP A 307 51.36 -92.81 REMARK 500 LYS A 309 -155.97 -105.75 REMARK 500 PHE A 323 -26.92 76.81 REMARK 500 HIS A 324 45.29 -91.71 REMARK 500 THR A 333 -166.99 -111.17 REMARK 500 ARG A 353 -147.06 -100.28 REMARK 500 ASN A 372 80.11 54.05 REMARK 500 CYS A 382 22.83 46.50 REMARK 500 LYS A 401 35.73 -147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 103 0.20 SIDE CHAIN REMARK 500 ARG A 157 0.11 SIDE CHAIN REMARK 500 ARG A 255 0.14 SIDE CHAIN REMARK 500 ARG A 298 0.21 SIDE CHAIN REMARK 500 ARG A 300 0.19 SIDE CHAIN REMARK 500 ARG A 327 0.08 SIDE CHAIN REMARK 500 ARG A 335 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8TSM A 26 405 UNP Q90922 NET1_CHICK 26 405 SEQADV 8TSM ALA A 22 UNP Q90922 EXPRESSION TAG SEQADV 8TSM PRO A 23 UNP Q90922 EXPRESSION TAG SEQADV 8TSM LEU A 24 UNP Q90922 EXPRESSION TAG SEQADV 8TSM ALA A 25 UNP Q90922 EXPRESSION TAG SEQADV 8TSM GLY A 406 UNP Q90922 EXPRESSION TAG SEQADV 8TSM SER A 407 UNP Q90922 EXPRESSION TAG SEQADV 8TSM SER A 408 UNP Q90922 EXPRESSION TAG SEQADV 8TSM GLY A 409 UNP Q90922 EXPRESSION TAG SEQADV 8TSM GLY A 410 UNP Q90922 EXPRESSION TAG SEQADV 8TSM GLY A 411 UNP Q90922 EXPRESSION TAG SEQADV 8TSM LEU A 412 UNP Q90922 EXPRESSION TAG SEQADV 8TSM VAL A 413 UNP Q90922 EXPRESSION TAG SEQADV 8TSM PRO A 414 UNP Q90922 EXPRESSION TAG SEQRES 1 A 393 ALA PRO LEU ALA GLY TYR PRO GLY LEU ASN MET PHE ALA SEQRES 2 A 393 VAL GLN THR ALA GLN PRO ASP PRO CYS TYR ASP GLU HIS SEQRES 3 A 393 GLY LEU PRO ARG ARG CYS ILE PRO ASP PHE VAL ASN SER SEQRES 4 A 393 ALA PHE GLY LYS GLU VAL LYS VAL SER SER THR CYS GLY SEQRES 5 A 393 LYS PRO PRO SER ARG TYR CYS VAL VAL THR GLU LYS GLY SEQRES 6 A 393 GLU GLU GLN VAL ARG SER CYS HIS LEU CYS ASN ALA SER SEQRES 7 A 393 ASP PRO LYS ARG ALA HIS PRO PRO SER PHE LEU THR ASP SEQRES 8 A 393 LEU ASN ASN PRO HIS ASN LEU THR CYS TRP GLN SER ASP SEQRES 9 A 393 SER TYR VAL GLN TYR PRO HIS ASN VAL THR LEU THR LEU SEQRES 10 A 393 SER LEU GLY LYS LYS PHE GLU VAL THR TYR VAL SER LEU SEQRES 11 A 393 GLN PHE CYS SER PRO ARG PRO GLU SER MET ALA ILE TYR SEQRES 12 A 393 LYS SER MET ASP TYR GLY LYS THR TRP VAL PRO PHE GLN SEQRES 13 A 393 PHE TYR SER THR GLN CYS ARG LYS MET TYR ASN LYS PRO SEQRES 14 A 393 SER ARG ALA ALA ILE THR LYS GLN ASN GLU GLN GLU ALA SEQRES 15 A 393 ILE CYS THR ASP SER HIS THR ASP VAL ARG PRO LEU SER SEQRES 16 A 393 GLY GLY LEU ILE ALA PHE SER THR LEU ASP GLY ARG PRO SEQRES 17 A 393 THR ALA HIS ASP PHE ASP ASN SER PRO VAL LEU GLN ASP SEQRES 18 A 393 TRP VAL THR ALA THR ASP ILE LYS VAL THR PHE SER ARG SEQRES 19 A 393 LEU HIS THR PHE GLY ASP GLU ASN GLU ASP ASP SER GLU SEQRES 20 A 393 LEU ALA ARG ASP SER TYR PHE TYR ALA VAL SER ASP LEU SEQRES 21 A 393 GLN VAL GLY GLY ARG CYS LYS CYS ASN GLY HIS ALA SER SEQRES 22 A 393 ARG CYS VAL ARG ASP ARG ASP ASP ASN LEU VAL CYS ASP SEQRES 23 A 393 CYS LYS HIS ASN THR ALA GLY PRO GLU CYS ASP ARG CYS SEQRES 24 A 393 LYS PRO PHE HIS TYR ASP ARG PRO TRP GLN ARG ALA THR SEQRES 25 A 393 ALA ARG GLU ALA ASN GLU CYS VAL ALA CYS ASN CYS ASN SEQRES 26 A 393 LEU HIS ALA ARG ARG CYS ARG PHE ASN MET GLU LEU TYR SEQRES 27 A 393 LYS LEU SER GLY ARG LYS SER GLY GLY VAL CYS LEU ASN SEQRES 28 A 393 CYS ARG HIS ASN THR ALA GLY ARG HIS CYS HIS TYR CYS SEQRES 29 A 393 LYS GLU GLY PHE TYR ARG ASP LEU SER LYS PRO ILE SER SEQRES 30 A 393 HIS ARG LYS ALA CYS LYS GLU GLY SER SER GLY GLY GLY SEQRES 31 A 393 LEU VAL PRO HET NAG A 501 27 HET NAG A 502 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 AA1 ASP A 100 ALA A 104 5 5 HELIX 2 AA2 PRO A 107 ASP A 112 1 6 HELIX 3 AA3 GLN A 182 TYR A 187 1 6 HELIX 4 AA4 THR A 230 PHE A 234 5 5 HELIX 5 AA5 VAL A 239 VAL A 244 1 6 HELIX 6 AA6 ASN A 355 SER A 362 1 8 SHEET 1 AA1 4 VAL A 58 ASN A 59 0 SHEET 2 AA1 4 GLY A 284 CYS A 287 -1 O GLY A 285 N VAL A 58 SHEET 3 AA1 4 VAL A 134 VAL A 146 -1 N GLU A 145 O ARG A 286 SHEET 4 AA1 4 VAL A 66 LYS A 67 -1 N LYS A 67 O THR A 137 SHEET 1 AA2 7 VAL A 58 ASN A 59 0 SHEET 2 AA2 7 GLY A 284 CYS A 287 -1 O GLY A 285 N VAL A 58 SHEET 3 AA2 7 VAL A 134 VAL A 146 -1 N GLU A 145 O ARG A 286 SHEET 4 AA2 7 THR A 245 PHE A 253 -1 O PHE A 253 N VAL A 134 SHEET 5 AA2 7 SER A 160 SER A 166 -1 N TYR A 164 O LYS A 250 SHEET 6 AA2 7 VAL A 174 SER A 180 -1 O GLN A 177 N ILE A 163 SHEET 7 AA2 7 CYS A 205 THR A 206 1 O THR A 206 N SER A 180 SHEET 1 AA3 2 SER A 77 LYS A 85 0 SHEET 2 AA3 2 GLU A 88 CYS A 96 -1 O SER A 92 N VAL A 81 SHEET 1 AA4 4 TRP A 122 GLN A 123 0 SHEET 2 AA4 4 ALA A 277 GLN A 282 -1 O VAL A 278 N TRP A 122 SHEET 3 AA4 4 TYR A 148 PHE A 153 -1 N GLN A 152 O SER A 279 SHEET 4 AA4 4 GLY A 218 SER A 223 -1 O ILE A 220 N LEU A 151 SHEET 1 AA5 2 CYS A 296 ARG A 298 0 SHEET 2 AA5 2 LEU A 304 CYS A 306 -1 O VAL A 305 N VAL A 297 SHEET 1 AA6 2 THR A 312 ALA A 313 0 SHEET 2 AA6 2 ARG A 319 CYS A 320 -1 O ARG A 319 N ALA A 313 SHEET 1 AA7 2 ARG A 351 CYS A 352 0 SHEET 2 AA7 2 CYS A 370 LEU A 371 -1 O LEU A 371 N ARG A 351 SHEET 1 AA8 2 THR A 377 ALA A 378 0 SHEET 2 AA8 2 TYR A 384 CYS A 385 -1 O TYR A 384 N ALA A 378 SHEET 1 AA9 2 TYR A 390 ARG A 391 0 SHEET 2 AA9 2 CYS A 403 LYS A 404 -1 O LYS A 404 N TYR A 390 SSBOND 1 CYS A 43 CYS A 53 1555 1555 2.04 SSBOND 2 CYS A 72 CYS A 96 1555 1555 2.03 SSBOND 3 CYS A 80 CYS A 93 1555 1555 2.03 SSBOND 4 CYS A 121 CYS A 154 1555 1555 2.05 SSBOND 5 CYS A 183 CYS A 205 1555 1555 2.03 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.05 SSBOND 7 CYS A 289 CYS A 306 1555 1555 2.04 SSBOND 8 CYS A 308 CYS A 317 1555 1555 2.03 SSBOND 9 CYS A 320 CYS A 340 1555 1555 2.02 SSBOND 10 CYS A 343 CYS A 352 1555 1555 2.04 SSBOND 11 CYS A 345 CYS A 370 1555 1555 2.03 SSBOND 12 CYS A 373 CYS A 382 1555 1555 2.03 SSBOND 13 CYS A 385 CYS A 403 1555 1555 2.03 LINK ND2 ASN A 118 C1 NAG A 502 1555 1555 1.45 LINK ND2 ASN A 133 C1 NAG A 501 1555 1555 1.45 CISPEP 1 LYS A 74 PRO A 75 0 -3.33 CISPEP 2 TYR A 130 PRO A 131 0 -9.65 CISPEP 3 ARG A 213 PRO A 214 0 -0.40 CRYST1 112.413 112.413 242.644 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004121 0.00000