HEADER ANTIVIRAL PROTEIN 26-AUG-23 8TYZ TITLE STRUCTURE OF A BACTERIAL E1-E2-UBL COMPLEX (FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: E1(BILD); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBL(BILA); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: E2(BILB); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENSIFER ARIDI; SOURCE 3 ORGANISM_TAXID: 1708715; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ENSIFER ARIDI; SOURCE 8 ORGANISM_TAXID: 1708715; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: ENSIFER ARIDI; SOURCE 13 ORGANISM_TAXID: 1708715; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E1, E2, ANTIVIRAL, ANTI-PHAGE, UBIQUITIN, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.YE,L.R.CHAMBERS,K.D.CORBETT REVDAT 5 20-NOV-24 8TYZ 1 REMARK REVDAT 4 07-AUG-24 8TYZ 1 JRNL REVDAT 3 31-JUL-24 8TYZ 1 JRNL REVDAT 2 17-JUL-24 8TYZ 1 JRNL REVDAT 1 12-JUN-24 8TYZ 0 JRNL AUTH L.R.CHAMBERS,Q.YE,J.CAI,M.GONG,H.E.LEDVINA,H.ZHOU, JRNL AUTH 2 A.T.WHITELEY,R.T.SUHANDYNATA,K.D.CORBETT JRNL TITL A EUKARYOTIC-LIKE UBIQUITINATION SYSTEM IN BACTERIAL JRNL TITL 2 ANTIVIRAL DEFENCE. JRNL REF NATURE V. 631 843 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 39020180 JRNL DOI 10.1038/S41586-024-07730-4 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 38499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.6800 - 6.4600 1.00 2845 143 0.1563 0.1825 REMARK 3 2 6.4600 - 5.1300 1.00 2674 143 0.1943 0.2096 REMARK 3 3 5.1300 - 4.4800 1.00 2663 140 0.1571 0.1836 REMARK 3 4 4.4800 - 4.0700 1.00 2648 139 0.1721 0.2200 REMARK 3 5 4.0700 - 3.7800 1.00 2616 132 0.1928 0.2717 REMARK 3 6 3.7800 - 3.5500 1.00 2588 153 0.2139 0.2608 REMARK 3 7 3.5500 - 3.3800 1.00 2605 137 0.2974 0.3046 REMARK 3 8 3.3800 - 3.2300 1.00 2590 146 0.2738 0.2937 REMARK 3 9 3.2300 - 3.1100 1.00 2583 144 0.2768 0.3375 REMARK 3 10 3.1100 - 3.0000 1.00 2586 134 0.2910 0.3506 REMARK 3 11 3.0000 - 2.9000 1.00 2577 123 0.3133 0.3564 REMARK 3 12 2.9000 - 2.8200 1.00 2599 130 0.3877 0.3840 REMARK 3 13 2.8200 - 2.7500 1.00 2551 166 0.4927 0.5388 REMARK 3 14 2.7500 - 2.6800 0.94 2407 137 0.6507 0.7851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.631 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.677 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5570 REMARK 3 ANGLE : 1.007 7563 REMARK 3 CHIRALITY : 0.054 849 REMARK 3 PLANARITY : 0.010 996 REMARK 3 DIHEDRAL : 13.032 2010 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -3.3721 -68.5823 -18.1982 REMARK 3 T TENSOR REMARK 3 T11: 0.9002 T22: 0.8035 REMARK 3 T33: 0.7796 T12: 0.0154 REMARK 3 T13: 0.0491 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.1286 L22: 0.9244 REMARK 3 L33: 0.9477 L12: -0.1437 REMARK 3 L13: 0.3109 L23: 0.1666 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.2253 S13: 0.0361 REMARK 3 S21: 0.0568 S22: -0.0146 S23: -0.0219 REMARK 3 S31: -0.1515 S32: -0.0176 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -8.5438 -62.4194 -41.9997 REMARK 3 T TENSOR REMARK 3 T11: 1.2162 T22: 1.4593 REMARK 3 T33: 1.0169 T12: 0.1808 REMARK 3 T13: 0.0082 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.2099 L22: 0.2830 REMARK 3 L33: 0.1796 L12: 0.1437 REMARK 3 L13: 0.0829 L23: 0.2244 REMARK 3 S TENSOR REMARK 3 S11: 0.2552 S12: 0.6626 S13: 0.0885 REMARK 3 S21: -0.7549 S22: -0.0175 S23: 0.3419 REMARK 3 S31: -0.1389 S32: -0.3406 S33: 0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -38.4318 -54.5946 -10.0539 REMARK 3 T TENSOR REMARK 3 T11: 1.1652 T22: 1.1348 REMARK 3 T33: 1.2396 T12: 0.2026 REMARK 3 T13: 0.0319 T23: -0.2193 REMARK 3 L TENSOR REMARK 3 L11: 0.4216 L22: 0.3948 REMARK 3 L33: 0.5186 L12: -0.2373 REMARK 3 L13: 0.0449 L23: -0.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.2141 S13: -0.3461 REMARK 3 S21: 0.0263 S22: -0.1885 S23: 0.4922 REMARK 3 S31: 0.0766 S32: -0.6722 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000276971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 199.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMIDAZOLE PH 8.0, 200 MM MGCL2, REMARK 280 AND 10% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 99.96250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 99.96250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.44000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 99.96250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 99.96250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.44000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 99.96250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 99.96250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.44000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 99.96250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.96250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.44000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 426 REMARK 465 GLY A 427 REMARK 465 SER A 428 REMARK 465 ARG A 429 REMARK 465 LEU A 430 REMARK 465 VAL A 431 REMARK 465 GLY A 509 REMARK 465 VAL A 510 REMARK 465 GLU A 511 REMARK 465 PRO A 512 REMARK 465 LEU A 513 REMARK 465 SER A 514 REMARK 465 ASN A 515 REMARK 465 ILE A 516 REMARK 465 SER A 517 REMARK 465 ALA A 518 REMARK 465 GLU A 519 REMARK 465 GLN A 520 REMARK 465 LYS A 521 REMARK 465 ARG A 522 REMARK 465 THR A 523 REMARK 465 SER A 524 REMARK 465 PRO A 525 REMARK 465 LEU A 526 REMARK 465 PRO A 527 REMARK 465 ARG A 528 REMARK 465 THR A 529 REMARK 465 GLY A 530 REMARK 465 ARG A 531 REMARK 465 GLN A 532 REMARK 465 VAL A 533 REMARK 465 CYS A 534 REMARK 465 ALA A 535 REMARK 465 SER B -1 REMARK 465 ASN B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 ASN B 10 REMARK 465 HIS B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 MET C 1 REMARK 465 LYS C 91 REMARK 465 ASP C 92 REMARK 465 LEU C 93 REMARK 465 PRO C 94 REMARK 465 LEU C 95 REMARK 465 ASN C 96 REMARK 465 MET C 97 REMARK 465 LEU C 98 REMARK 465 ARG C 99 REMARK 465 ARG C 100 REMARK 465 PRO C 101 REMARK 465 GLN C 102 REMARK 465 LEU C 103 REMARK 465 PRO C 104 REMARK 465 GLY C 105 REMARK 465 THR C 106 REMARK 465 PRO C 107 REMARK 465 PRO C 108 REMARK 465 GLU C 109 REMARK 465 MET C 110 REMARK 465 ILE C 111 REMARK 465 SER C 112 REMARK 465 ASN C 113 REMARK 465 LEU C 114 REMARK 465 ILE C 115 REMARK 465 GLN C 116 REMARK 465 GLN C 117 REMARK 465 ASN C 118 REMARK 465 ALA C 119 REMARK 465 VAL C 120 REMARK 465 SER C 121 REMARK 465 LEU C 122 REMARK 465 THR C 123 REMARK 465 ASP C 124 REMARK 465 PHE C 125 REMARK 465 ILE C 126 REMARK 465 GLN C 127 REMARK 465 ALA C 128 REMARK 465 ASN C 129 REMARK 465 SER C 130 REMARK 465 LEU C 131 REMARK 465 GLN C 132 REMARK 465 ASP C 133 REMARK 465 THR C 179 REMARK 465 GLY C 180 REMARK 465 PRO C 181 REMARK 465 VAL C 182 REMARK 465 GLU C 183 REMARK 465 GLN C 184 REMARK 465 LEU C 185 REMARK 465 HIS C 186 REMARK 465 ILE C 187 REMARK 465 GLN C 188 REMARK 465 LEU C 189 REMARK 465 GLN C 190 REMARK 465 TYR C 191 REMARK 465 ALA C 192 REMARK 465 VAL C 193 REMARK 465 GLY C 194 REMARK 465 LEU C 195 REMARK 465 LEU C 196 REMARK 465 VAL C 197 REMARK 465 PRO C 198 REMARK 465 PRO C 199 REMARK 465 GLN C 200 REMARK 465 ALA C 201 REMARK 465 ILE C 202 REMARK 465 PRO C 203 REMARK 465 GLU C 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 61 O HOH B 101 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG C 57 OD2 ASP C 81 7555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 138 CA - CB - SG ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 -164.07 -127.75 REMARK 500 LEU A 63 -42.95 -146.40 REMARK 500 SER A 115 57.24 -107.56 REMARK 500 PHE A 165 47.44 -108.12 REMARK 500 ASP A 179 81.36 -156.84 REMARK 500 ASP A 235 140.28 -178.56 REMARK 500 LEU A 244 0.50 -67.52 REMARK 500 LEU A 313 65.22 60.09 REMARK 500 GLN A 323 -162.25 -128.04 REMARK 500 ASP A 335 48.94 -105.48 REMARK 500 GLN A 376 -72.44 -65.92 REMARK 500 ILE A 416 -73.90 -97.72 REMARK 500 ALA B 54 -71.35 -61.05 REMARK 500 ASP C 71 -20.27 159.33 REMARK 500 PHE C 136 -18.27 90.65 REMARK 500 LEU C 137 54.20 83.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR C 70 ASP C 71 117.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 340 SG REMARK 620 2 CYS A 343 SG 111.1 REMARK 620 3 CYS A 491 SG 109.1 110.8 REMARK 620 4 CYS A 493 SG 108.4 103.2 114.1 REMARK 620 N 1 2 3 DBREF 8TYZ A 1 535 PDB 8TYZ 8TYZ 1 535 DBREF 8TYZ B -1 98 PDB 8TYZ 8TYZ -1 98 DBREF 8TYZ C 1 204 PDB 8TYZ 8TYZ 1 204 SEQRES 1 A 535 MET ALA LEU ALA ASN PHE ILE ASP ARG ALA ALA THR ALA SEQRES 2 A 535 ALA SER GLN VAL LEU THR ASP PHE HIS LEU GLY ASP PHE SEQRES 3 A 535 LYS ALA ALA LEU GLU LYS GLN VAL VAL ALA VAL ALA PHE SEQRES 4 A 535 ASP ASP GLN ALA ILE SER CYS ALA GLU GLY GLN ALA THR SEQRES 5 A 535 LEU ASP LEU ALA VAL ARG LEU LEU ALA ARG LEU TYR PRO SEQRES 6 A 535 VAL LEU ALA ILE LEU PRO LEU ASP SER ALA ALA SER SER SEQRES 7 A 535 GLN ALA GLN ALA LEU GLU ARG LEU ALA LYS SER ILE ASN SEQRES 8 A 535 ARG LYS ILE GLY ILE ARG ARG SER GLY LYS SER ALA THR SEQRES 9 A 535 VAL CYS LEU VAL ALA GLY ALA THR ARG PRO SER LEU ARG SEQRES 10 A 535 CYS PRO THR PHE PHE ILE GLY SER ASP GLY TRP ALA ALA SEQRES 11 A 535 LYS LEU SER ARG THR ASP PRO VAL GLY SER GLY SER SER SEQRES 12 A 535 LEU LEU PRO TYR GLY ALA GLY ALA ALA SER CYS PHE GLY SEQRES 13 A 535 ALA ALA ASN VAL PHE ARG THR ILE PHE ALA ALA GLN LEU SEQRES 14 A 535 THR GLY ALA GLU SER ASP GLU ASN ILE ASP LEU SER LEU SEQRES 15 A 535 TYR SER TYR ASN LYS SER ARG ALA GLY ASP ALA GLY PRO SEQRES 16 A 535 ILE ASP PRO ALA VAL ASP LEU GLY GLU THR HIS LEU VAL SEQRES 17 A 535 GLY LEU GLY ALA ILE ALA HIS GLY ALA LEU TRP ALA LEU SEQRES 18 A 535 ALA ARG GLN SER GLY LEU SER GLY ARG LEU HIS VAL VAL SEQRES 19 A 535 ASP HIS GLU ALA VAL GLU LEU SER ASN LEU GLN ARG TYR SEQRES 20 A 535 VAL LEU ALA GLY GLN ALA GLU ILE GLY MET SER LYS ALA SEQRES 21 A 535 VAL LEU ALA THR THR ALA LEU ARG SER THR ALA LEU GLU SEQRES 22 A 535 VAL GLU ALA HIS PRO LEU LYS TRP ALA GLU HIS VAL ALA SEQRES 23 A 535 ARG ARG GLY ASP TRP ILE PHE ASP ARG VAL GLY VAL ALA SEQRES 24 A 535 LEU ASP THR ALA ALA ASP ARG VAL ALA VAL GLN GLY ALA SEQRES 25 A 535 LEU PRO ARG TRP ILE ALA ASN ALA TRP THR GLN GLU HIS SEQRES 26 A 535 ASP LEU GLY ILE SER ARG HIS GLY PHE ASP ASP GLY GLN SEQRES 27 A 535 ALA CYS LEU CYS CYS MET TYR MET PRO SER GLY LYS SER SEQRES 28 A 535 LYS ASP GLU HIS GLN LEU VAL ALA GLU GLU LEU GLY ILE SEQRES 29 A 535 PRO GLU ALA HIS GLU GLN VAL LYS ALA LEU LEU GLN THR SEQRES 30 A 535 ASN ALA GLY VAL PRO ASN ASP PHE VAL VAL ARG VAL ALA SEQRES 31 A 535 THR ALA MET GLY VAL PRO PHE GLU PRO LEU ALA PRO PHE SEQRES 32 A 535 VAL GLY GLN PRO LEU ARG SER PHE TYR GLN GLN ALA ILE SEQRES 33 A 535 CYS GLY GLY LEU VAL PHE GLN LEU SER ASP GLY SER ARG SEQRES 34 A 535 LEU VAL ARG THR VAL VAL PRO MET ALA PHE GLN SER ALA SEQRES 35 A 535 LEU ALA GLY ILE MET LEU ALA ALA GLU LEU VAL LYS HIS SEQRES 36 A 535 SER ALA GLY PHE PRO MET SER PRO THR THR SER THR ARG SEQRES 37 A 535 VAL ASN LEU LEU ARG PRO LEU GLY SER HIS LEU HIS ASP SEQRES 38 A 535 PRO LYS ALA LYS ASP SER SER GLY ARG CYS ILE CYS SER SEQRES 39 A 535 ASP GLU ASP PHE ILE SER ALA TYR ARG ARG LYS TYR GLY SEQRES 40 A 535 ASN GLY VAL GLU PRO LEU SER ASN ILE SER ALA GLU GLN SEQRES 41 A 535 LYS ARG THR SER PRO LEU PRO ARG THR GLY ARG GLN VAL SEQRES 42 A 535 CYS ALA SEQRES 1 B 100 SER ASN ALA SER LYS ASP SER ARG LYS GLY ASP ASN HIS SEQRES 2 B 100 GLY GLY GLY SER GLY LYS ILE GLU ILE ILE VAL VAL VAL SEQRES 3 B 100 ASN GLY GLN PRO THR GLN VAL GLU ALA ASN PRO ASN GLN SEQRES 4 B 100 PRO LEU HIS VAL VAL ARG THR LYS ALA LEU GLU ASN THR SEQRES 5 B 100 GLN ASN VAL ALA GLN PRO PRO ASP ASN TRP GLU PHE LYS SEQRES 6 B 100 ASP GLU ALA GLY ASN LEU LEU ASP VAL ASP LYS LYS ILE SEQRES 7 B 100 GLY ASP PHE GLY PHE ALA ASN THR VAL THR LEU PHE LEU SEQRES 8 B 100 SER LEU LYS ALA GLY VAL ALA GLY ALA SEQRES 1 C 204 MET PRO GLU LEU GLN THR VAL ASP PRO GLU VAL SER ARG SEQRES 2 C 204 ALA LYS PHE ASP ARG GLU ILE SER ARG PHE ARG PRO TYR SEQRES 3 C 204 ALA ASP ALA TYR ARG MET GLN GLY CYS PHE LEU ILE GLU SEQRES 4 C 204 GLU SER PHE PRO SER ALA PHE PHE ILE PHE ALA SER PRO SEQRES 5 C 204 LYS VAL LYS PRO ARG VAL ILE GLY ALA ALA ILE GLU ILE SEQRES 6 C 204 ASP PHE THR ASN TYR ASP LEU ARG PRO PRO SER VAL VAL SEQRES 7 C 204 PHE VAL ASP PRO PHE THR ARG GLN PRO ILE ALA ARG LYS SEQRES 8 C 204 ASP LEU PRO LEU ASN MET LEU ARG ARG PRO GLN LEU PRO SEQRES 9 C 204 GLY THR PRO PRO GLU MET ILE SER ASN LEU ILE GLN GLN SEQRES 10 C 204 ASN ALA VAL SER LEU THR ASP PHE ILE GLN ALA ASN SER SEQRES 11 C 204 LEU GLN ASP SER PRO PHE LEU CYS MET ALA GLY VAL ARG SEQRES 12 C 204 GLU TYR HIS ASP ASN PRO ALA HIS SER GLY ASP PRO TRP SEQRES 13 C 204 LEU LEU HIS ARG GLY SER GLY GLU GLY CYS LEU ALA PHE SEQRES 14 C 204 ILE LEU ASP LYS ILE ILE LYS TYR GLY THR GLY PRO VAL SEQRES 15 C 204 GLU GLN LEU HIS ILE GLN LEU GLN TYR ALA VAL GLY LEU SEQRES 16 C 204 LEU VAL PRO PRO GLN ALA ILE PRO GLU HET ZN A 601 1 HETNAM ZN ZINC ION FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *18(H2 O) HELIX 1 AA1 PHE A 6 GLN A 16 1 11 HELIX 2 AA2 HIS A 22 LYS A 32 1 11 HELIX 3 AA3 ASP A 40 SER A 45 1 6 HELIX 4 AA4 CYS A 46 ALA A 61 1 16 HELIX 5 AA5 ALA A 76 ASN A 91 1 16 HELIX 6 AA6 PRO A 146 PHE A 165 1 20 HELIX 7 AA7 GLY A 211 ARG A 223 1 13 HELIX 8 AA8 GLU A 240 ARG A 246 5 7 HELIX 9 AA9 GLY A 251 ILE A 255 5 5 HELIX 10 AB1 SER A 258 LEU A 267 1 10 HELIX 11 AB2 LYS A 280 GLY A 289 1 10 HELIX 12 AB3 THR A 302 ALA A 312 1 11 HELIX 13 AB4 CYS A 342 MET A 346 5 5 HELIX 14 AB5 ASP A 353 LEU A 362 1 10 HELIX 15 AB6 ILE A 364 GLU A 366 5 3 HELIX 16 AB7 ALA A 367 THR A 377 1 11 HELIX 17 AB8 PRO A 382 GLY A 394 1 13 HELIX 18 AB9 PRO A 396 ALA A 401 1 6 HELIX 19 AC1 PRO A 402 VAL A 404 5 3 HELIX 20 AC2 PRO A 407 ILE A 416 1 10 HELIX 21 AC3 GLY A 419 SER A 425 1 7 HELIX 22 AC4 MET A 437 GLY A 458 1 22 HELIX 23 AC5 CYS A 491 SER A 494 5 4 HELIX 24 AC6 ASP A 495 GLY A 507 1 13 HELIX 25 AC7 PRO B 38 THR B 50 1 13 HELIX 26 AC8 PRO B 56 ASP B 58 5 3 HELIX 27 AC9 LYS B 75 GLY B 80 5 6 HELIX 28 AD1 ASP C 8 ARG C 24 1 17 HELIX 29 AD2 TYR C 26 GLY C 34 1 9 HELIX 30 AD3 VAL C 142 ASP C 147 1 6 HELIX 31 AD4 ASN C 148 SER C 152 5 5 HELIX 32 AD5 PRO C 155 HIS C 159 5 5 HELIX 33 AD6 CYS C 166 GLY C 178 1 13 SHEET 1 AA1 7 GLY A 95 ARG A 97 0 SHEET 2 AA1 7 VAL A 66 PRO A 71 1 N LEU A 67 O GLY A 95 SHEET 3 AA1 7 VAL A 35 PHE A 39 1 N VAL A 37 O ALA A 68 SHEET 4 AA1 7 VAL A 105 ALA A 109 1 O LEU A 107 N ALA A 36 SHEET 5 AA1 7 THR A 120 ASP A 126 1 O PHE A 121 N CYS A 106 SHEET 6 AA1 7 ALA A 129 SER A 133 -1 O SER A 133 N PHE A 122 SHEET 7 AA1 7 ASN A 177 SER A 181 -1 O ILE A 178 N LEU A 132 SHEET 1 AA2 8 ALA A 271 HIS A 277 0 SHEET 2 AA2 8 LEU A 227 VAL A 234 1 N VAL A 233 O HIS A 277 SHEET 3 AA2 8 VAL A 200 VAL A 208 1 N LEU A 207 O HIS A 232 SHEET 4 AA2 8 ARG A 295 VAL A 298 1 O GLY A 297 N HIS A 206 SHEET 5 AA2 8 TRP A 316 THR A 322 1 O ALA A 318 N VAL A 298 SHEET 6 AA2 8 LEU A 327 GLY A 333 -1 O SER A 330 N ASN A 319 SHEET 7 AA2 8 SER A 466 VAL A 469 -1 O VAL A 469 N LEU A 327 SHEET 8 AA2 8 HIS A 480 ASP A 481 -1 O ASP A 481 N SER A 466 SHEET 1 AA3 4 GLN B 27 ALA B 33 0 SHEET 2 AA3 4 ILE B 18 VAL B 24 -1 N ILE B 18 O ALA B 33 SHEET 3 AA3 4 THR B 84 LEU B 91 1 O LEU B 89 N VAL B 23 SHEET 4 AA3 4 TRP B 60 LYS B 63 -1 N LYS B 63 O PHE B 88 SHEET 1 AA4 4 CYS C 35 SER C 41 0 SHEET 2 AA4 4 SER C 44 ALA C 50 -1 O PHE C 46 N GLU C 39 SHEET 3 AA4 4 ILE C 59 ASP C 66 -1 O ALA C 61 N PHE C 49 SHEET 4 AA4 4 SER C 76 PHE C 79 -1 O VAL C 78 N GLU C 64 SSBOND 1 CYS A 417 CYS C 138 1555 1555 2.01 LINK SG CYS A 340 ZN ZN A 601 1555 1555 2.28 LINK SG CYS A 343 ZN ZN A 601 1555 1555 2.29 LINK SG CYS A 491 ZN ZN A 601 1555 1555 2.22 LINK SG CYS A 493 ZN ZN A 601 1555 1555 2.22 CISPEP 1 PHE C 42 PRO C 43 0 1.03 CISPEP 2 LYS C 55 PRO C 56 0 8.93 CRYST1 199.925 199.925 66.880 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005002 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014952 0.00000 CONECT 2516 5456 CONECT 2536 5456 CONECT 3104 5143 CONECT 3604 5456 CONECT 3618 5456 CONECT 5143 3104 CONECT 5456 2516 2536 3604 3618 MASTER 499 0 1 33 23 0 0 6 5471 3 7 66 END