HEADER VIRAL PROTEIN 29-AUG-23 8U0R TITLE THE CRYSTAL STRUCTURE OF PROTEIN A21, A COMPONENT OF THE CONSERVED TITLE 2 POXVIRUS ENTRY-FUSION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRION MEMBRANE PROTEIN A21; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS WESTERN RESERVE; SOURCE 3 ORGANISM_TAXID: 696871; SOURCE 4 GENE: MVA131L; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POXVIRUS, ENTRY-FUSION COMPLEX, POXVIRUS A21 PROTEIN, VACCINIA VIRUS, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.DIESTERBECK,A.G.GITTIS,D.N.GARBOCZI,B.MOSS REVDAT 1 04-SEP-24 8U0R 0 JRNL AUTH U.DIESTERBECK,A.TAK,A.G.GITTIS,D.N.GARBOCZI,B.MOSS JRNL TITL THE CRYSTAL STRUCTURE OF PROTEIN A21, A COMPONENT OF THE JRNL TITL 2 CONSERVED POXVIRUS ENTRY-FUSION COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3100 - 5.4000 1.00 1658 146 0.2329 0.2638 REMARK 3 2 5.4000 - 4.2900 1.00 1632 142 0.1705 0.2084 REMARK 3 3 4.2900 - 3.7500 1.00 1609 140 0.1825 0.1821 REMARK 3 4 3.7500 - 3.4100 1.00 1605 140 0.1916 0.2172 REMARK 3 5 3.4100 - 3.1600 1.00 1599 138 0.2012 0.2369 REMARK 3 6 3.1600 - 2.9800 1.00 1626 142 0.2268 0.2271 REMARK 3 7 2.9800 - 2.8300 1.00 1606 139 0.2424 0.2763 REMARK 3 8 2.8300 - 2.7000 1.00 1597 139 0.2399 0.2886 REMARK 3 9 2.7000 - 2.6000 1.00 1590 138 0.2517 0.2862 REMARK 3 10 2.6000 - 2.5100 1.00 1598 139 0.2605 0.3034 REMARK 3 11 2.5100 - 2.4300 1.00 1598 140 0.2671 0.3223 REMARK 3 12 2.4300 - 2.3600 1.00 1606 140 0.2704 0.3611 REMARK 3 13 2.3600 - 2.3000 0.91 1468 127 0.2924 0.3316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.314 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.099 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3602 REMARK 3 ANGLE : 1.301 4804 REMARK 3 CHIRALITY : 0.233 523 REMARK 3 PLANARITY : 0.007 628 REMARK 3 DIHEDRAL : 15.115 1255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.310 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ONE ML OF PROTEIN AT A CONCENTRATION REMARK 280 OF 10 MG/ML IN I10 MM TRIS-HCL, 50 MM NACL, PH 8.0 WAS MIXED REMARK 280 WITH 1 ML OF MOTHER LIQUOR CONTAINING 20% PEG 4000, 0.1 M NA- REMARK 280 CITRATE, 10% ETHANOL, AND 1-5% COCKTAIL MIXTURE OF LOW MOLECULAR REMARK 280 ALCOHOLS,, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 24 REMARK 465 LYS A 25 REMARK 465 MET A 26 REMARK 465 ARG A 27 REMARK 465 ARG A 28 REMARK 465 GLU A 29 REMARK 465 ARG A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 TYR A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 35 REMARK 465 TYR A 36 REMARK 465 LYS A 37 REMARK 465 ARG A 38 REMARK 465 LEU A 39 REMARK 465 ASN A 40 REMARK 465 LYS A 41 REMARK 465 THR A 117 REMARK 465 GLU B 24 REMARK 465 LYS B 25 REMARK 465 MET B 26 REMARK 465 ARG B 27 REMARK 465 ARG B 28 REMARK 465 GLU B 29 REMARK 465 ARG B 30 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 TYR B 33 REMARK 465 VAL B 34 REMARK 465 ASN B 35 REMARK 465 TYR B 36 REMARK 465 LYS B 37 REMARK 465 ARG B 38 REMARK 465 LEU B 39 REMARK 465 ASN B 40 REMARK 465 THR B 117 REMARK 465 GLU C 24 REMARK 465 LYS C 25 REMARK 465 MET C 26 REMARK 465 ARG C 27 REMARK 465 ARG C 28 REMARK 465 GLU C 29 REMARK 465 ARG C 30 REMARK 465 ALA C 31 REMARK 465 ALA C 32 REMARK 465 TYR C 33 REMARK 465 VAL C 34 REMARK 465 ASN C 35 REMARK 465 TYR C 36 REMARK 465 LYS C 37 REMARK 465 ARG C 38 REMARK 465 LEU C 39 REMARK 465 ASN C 40 REMARK 465 LYS C 41 REMARK 465 THR C 116 REMARK 465 THR C 117 REMARK 465 GLU D 24 REMARK 465 LYS D 25 REMARK 465 MET D 26 REMARK 465 ARG D 27 REMARK 465 ARG D 28 REMARK 465 GLU D 29 REMARK 465 ARG D 30 REMARK 465 ALA D 31 REMARK 465 ALA D 32 REMARK 465 TYR D 33 REMARK 465 VAL D 34 REMARK 465 ASN D 35 REMARK 465 TYR D 36 REMARK 465 LYS D 37 REMARK 465 ARG D 38 REMARK 465 LEU D 39 REMARK 465 ASN D 40 REMARK 465 PHE D 115 REMARK 465 THR D 116 REMARK 465 THR D 117 REMARK 465 GLU E 24 REMARK 465 LYS E 25 REMARK 465 MET E 26 REMARK 465 ARG E 27 REMARK 465 ARG E 28 REMARK 465 GLU E 29 REMARK 465 ARG E 30 REMARK 465 ALA E 31 REMARK 465 ALA E 32 REMARK 465 TYR E 33 REMARK 465 VAL E 34 REMARK 465 ASN E 35 REMARK 465 TYR E 36 REMARK 465 LYS E 37 REMARK 465 ARG E 38 REMARK 465 LEU E 39 REMARK 465 ASN E 40 REMARK 465 LYS E 41 REMARK 465 THR E 116 REMARK 465 THR E 117 REMARK 465 GLU F 24 REMARK 465 LYS F 25 REMARK 465 MET F 26 REMARK 465 ARG F 27 REMARK 465 ARG F 28 REMARK 465 GLU F 29 REMARK 465 ARG F 30 REMARK 465 ALA F 31 REMARK 465 ALA F 32 REMARK 465 TYR F 33 REMARK 465 VAL F 34 REMARK 465 ASN F 35 REMARK 465 TYR F 36 REMARK 465 LYS F 37 REMARK 465 ARG F 38 REMARK 465 LEU F 39 REMARK 465 ASN F 40 REMARK 465 THR F 116 REMARK 465 THR F 117 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 56 CB OG1 CG2 REMARK 470 THR A 57 CB OG1 CG2 REMARK 470 SER A 58 OG REMARK 470 LYS A 61 CD CE NZ REMARK 470 LYS A 77 NZ REMARK 470 ASN A 84 CG OD1 ND2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 THR A 116 OG1 CG2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 THR B 57 CB OG1 CG2 REMARK 470 SER B 58 CB OG REMARK 470 LYS B 61 CD CE NZ REMARK 470 LYS B 77 CD CE NZ REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 ASN B 84 CG OD1 ND2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 ALA B 103 CB REMARK 470 THR B 116 OG1 CG2 REMARK 470 ASN C 42 CG OD1 ND2 REMARK 470 ASP C 48 CG OD1 OD2 REMARK 470 SER C 58 CB OG REMARK 470 LYS C 77 CD CE NZ REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 ASN C 83 OD1 ND2 REMARK 470 ASN C 84 OD1 ND2 REMARK 470 LYS C 85 NZ REMARK 470 ASP C 86 CG OD1 OD2 REMARK 470 LYS C 94 CG CD CE NZ REMARK 470 ARG C 104 CD NE CZ NH1 NH2 REMARK 470 ASP C 112 CB CG OD1 OD2 REMARK 470 LEU C 113 CG CD1 CD2 REMARK 470 PHE C 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 41 CG CD CE NZ REMARK 470 ASN D 42 CG OD1 ND2 REMARK 470 ASP D 48 OD1 OD2 REMARK 470 ASN D 54 OD1 ND2 REMARK 470 THR D 57 OG1 CG2 REMARK 470 SER D 58 CB OG REMARK 470 LYS D 61 CD CE NZ REMARK 470 LYS D 69 CD CE NZ REMARK 470 LYS D 77 CD CE NZ REMARK 470 GLU D 80 CG CD OE1 OE2 REMARK 470 LYS D 85 CB CG CD CE NZ REMARK 470 LYS D 94 CG CD CE NZ REMARK 470 ARG D 108 NE CZ NH1 NH2 REMARK 470 LYS E 77 CD CE NZ REMARK 470 GLU E 80 CG CD OE1 OE2 REMARK 470 ASN E 84 CG OD1 ND2 REMARK 470 LYS E 85 CE NZ REMARK 470 ASP E 86 CG OD1 OD2 REMARK 470 LYS E 94 CE NZ REMARK 470 ASP E 97 CG OD1 OD2 REMARK 470 ARG E 104 CD NE CZ NH1 NH2 REMARK 470 ARG E 108 CG CD NE CZ NH1 NH2 REMARK 470 PHE E 115 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE F 55 CD1 CD2 CE1 CE2 CZ REMARK 470 THR F 57 CB OG1 CG2 REMARK 470 SER F 58 OG REMARK 470 LYS F 61 CD CE NZ REMARK 470 LYS F 77 CD CE NZ REMARK 470 ASP F 86 CG OD1 OD2 REMARK 470 LYS F 94 CD CE NZ REMARK 470 ASP F 97 OD1 OD2 REMARK 470 PHE F 115 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -132.15 -162.94 REMARK 500 PHE A 114 -54.96 -127.53 REMARK 500 PHE A 115 44.30 -90.19 REMARK 500 THR B 56 -158.88 -128.70 REMARK 500 SER B 58 30.55 -87.56 REMARK 500 ASN B 84 55.19 -153.09 REMARK 500 ASP B 86 64.10 -118.62 REMARK 500 ASP B 93 132.89 -170.65 REMARK 500 THR C 56 -156.78 -114.76 REMARK 500 ASN C 84 71.44 -116.12 REMARK 500 ASP C 86 48.66 -151.06 REMARK 500 ASP C 93 129.49 -171.07 REMARK 500 THR D 56 89.31 64.04 REMARK 500 THR D 57 -85.96 -171.40 REMARK 500 ASP D 97 29.87 -146.47 REMARK 500 ASP E 47 -130.96 61.96 REMARK 500 SER E 58 32.25 -95.88 REMARK 500 ASP E 86 68.40 -115.82 REMARK 500 PHE F 55 78.48 -112.03 REMARK 500 LYS F 85 20.54 -69.95 REMARK 500 PHE F 114 50.27 -115.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 214 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 TYR B 91 O 127.8 REMARK 620 N 1 DBREF 8U0R A 24 117 UNP P68711 A21_VACCA 24 117 DBREF 8U0R B 24 117 UNP P68711 A21_VACCA 24 117 DBREF 8U0R C 24 117 UNP P68711 A21_VACCA 24 117 DBREF 8U0R D 24 117 UNP P68711 A21_VACCA 24 117 DBREF 8U0R E 24 117 UNP P68711 A21_VACCA 24 117 DBREF 8U0R F 24 117 UNP P68711 A21_VACCA 24 117 SEQRES 1 A 94 GLU LYS MET ARG ARG GLU ARG ALA ALA TYR VAL ASN TYR SEQRES 2 A 94 LYS ARG LEU ASN LYS ASN PHE ILE CYS VAL ASP ASP ARG SEQRES 3 A 94 LEU PHE SER TYR ASN PHE THR THR SER GLY ILE LYS ALA SEQRES 4 A 94 LYS VAL ALA VAL ASP ASN LYS ASN VAL PRO ILE PRO CYS SEQRES 5 A 94 SER LYS ILE ASN GLU VAL ASN ASN ASN LYS ASP VAL ASP SEQRES 6 A 94 THR LEU TYR CYS ASP LYS ASP ARG ASP ASP ILE PRO GLY SEQRES 7 A 94 PHE ALA ARG SER CYS TYR ARG ALA TYR SER ASP LEU PHE SEQRES 8 A 94 PHE THR THR SEQRES 1 B 94 GLU LYS MET ARG ARG GLU ARG ALA ALA TYR VAL ASN TYR SEQRES 2 B 94 LYS ARG LEU ASN LYS ASN PHE ILE CYS VAL ASP ASP ARG SEQRES 3 B 94 LEU PHE SER TYR ASN PHE THR THR SER GLY ILE LYS ALA SEQRES 4 B 94 LYS VAL ALA VAL ASP ASN LYS ASN VAL PRO ILE PRO CYS SEQRES 5 B 94 SER LYS ILE ASN GLU VAL ASN ASN ASN LYS ASP VAL ASP SEQRES 6 B 94 THR LEU TYR CYS ASP LYS ASP ARG ASP ASP ILE PRO GLY SEQRES 7 B 94 PHE ALA ARG SER CYS TYR ARG ALA TYR SER ASP LEU PHE SEQRES 8 B 94 PHE THR THR SEQRES 1 C 94 GLU LYS MET ARG ARG GLU ARG ALA ALA TYR VAL ASN TYR SEQRES 2 C 94 LYS ARG LEU ASN LYS ASN PHE ILE CYS VAL ASP ASP ARG SEQRES 3 C 94 LEU PHE SER TYR ASN PHE THR THR SER GLY ILE LYS ALA SEQRES 4 C 94 LYS VAL ALA VAL ASP ASN LYS ASN VAL PRO ILE PRO CYS SEQRES 5 C 94 SER LYS ILE ASN GLU VAL ASN ASN ASN LYS ASP VAL ASP SEQRES 6 C 94 THR LEU TYR CYS ASP LYS ASP ARG ASP ASP ILE PRO GLY SEQRES 7 C 94 PHE ALA ARG SER CYS TYR ARG ALA TYR SER ASP LEU PHE SEQRES 8 C 94 PHE THR THR SEQRES 1 D 94 GLU LYS MET ARG ARG GLU ARG ALA ALA TYR VAL ASN TYR SEQRES 2 D 94 LYS ARG LEU ASN LYS ASN PHE ILE CYS VAL ASP ASP ARG SEQRES 3 D 94 LEU PHE SER TYR ASN PHE THR THR SER GLY ILE LYS ALA SEQRES 4 D 94 LYS VAL ALA VAL ASP ASN LYS ASN VAL PRO ILE PRO CYS SEQRES 5 D 94 SER LYS ILE ASN GLU VAL ASN ASN ASN LYS ASP VAL ASP SEQRES 6 D 94 THR LEU TYR CYS ASP LYS ASP ARG ASP ASP ILE PRO GLY SEQRES 7 D 94 PHE ALA ARG SER CYS TYR ARG ALA TYR SER ASP LEU PHE SEQRES 8 D 94 PHE THR THR SEQRES 1 E 94 GLU LYS MET ARG ARG GLU ARG ALA ALA TYR VAL ASN TYR SEQRES 2 E 94 LYS ARG LEU ASN LYS ASN PHE ILE CYS VAL ASP ASP ARG SEQRES 3 E 94 LEU PHE SER TYR ASN PHE THR THR SER GLY ILE LYS ALA SEQRES 4 E 94 LYS VAL ALA VAL ASP ASN LYS ASN VAL PRO ILE PRO CYS SEQRES 5 E 94 SER LYS ILE ASN GLU VAL ASN ASN ASN LYS ASP VAL ASP SEQRES 6 E 94 THR LEU TYR CYS ASP LYS ASP ARG ASP ASP ILE PRO GLY SEQRES 7 E 94 PHE ALA ARG SER CYS TYR ARG ALA TYR SER ASP LEU PHE SEQRES 8 E 94 PHE THR THR SEQRES 1 F 94 GLU LYS MET ARG ARG GLU ARG ALA ALA TYR VAL ASN TYR SEQRES 2 F 94 LYS ARG LEU ASN LYS ASN PHE ILE CYS VAL ASP ASP ARG SEQRES 3 F 94 LEU PHE SER TYR ASN PHE THR THR SER GLY ILE LYS ALA SEQRES 4 F 94 LYS VAL ALA VAL ASP ASN LYS ASN VAL PRO ILE PRO CYS SEQRES 5 F 94 SER LYS ILE ASN GLU VAL ASN ASN ASN LYS ASP VAL ASP SEQRES 6 F 94 THR LEU TYR CYS ASP LYS ASP ARG ASP ASP ILE PRO GLY SEQRES 7 F 94 PHE ALA ARG SER CYS TYR ARG ALA TYR SER ASP LEU PHE SEQRES 8 F 94 PHE THR THR HET EOH A 201 3 HET EDO A 202 4 HET EDO A 203 4 HET MOH A 204 2 HET MOH A 205 2 HET MOH A 206 2 HET IOD A 207 1 HET IOD A 208 1 HET IOD A 209 1 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET EOH B 201 3 HET EDO B 202 4 HET PDO B 203 5 HET PDO B 204 5 HET PGR B 205 5 HET IOD B 206 1 HET IOD B 207 1 HET IOD B 208 1 HET IOD B 209 1 HET IOD B 210 1 HET IOD B 211 1 HET CL B 212 1 HET CL B 213 1 HET NA B 214 1 HET PG0 B 215 8 HET DHL B 216 4 HET EDO C 201 4 HET EDO C 202 4 HET EDO C 203 4 HET MOH C 204 2 HET MOH C 205 2 HET PDO C 206 5 HET IOD C 207 1 HET CL C 208 1 HET NA C 209 1 HET PGE C 210 10 HET PEG C 211 7 HET EOH D 201 3 HET EDO D 202 4 HET EDO D 203 4 HET PDO D 204 5 HET POL D 205 4 HET IOD D 206 1 HET IOD D 207 1 HET CL D 208 1 HET PEG D 209 7 HET GOL E 201 6 HET EOH E 202 3 HET EDO E 203 4 HET EDO E 204 4 HET MOH E 205 2 HET PDO E 206 5 HET IPA E 207 4 HET GOL F 201 6 HET GOL F 202 6 HET EOH F 203 3 HET EDO F 204 4 HET MOH F 205 2 HET MOH F 206 2 HET MOH F 207 2 HET CL F 208 1 HET CL F 209 1 HET PGE F 210 10 HET PEG F 211 7 HET DHL F 212 4 HETNAM EOH ETHANOL HETNAM EDO 1,2-ETHANEDIOL HETNAM MOH METHANOL HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION HETNAM PDO 1,3-PROPANDIOL HETNAM PGR R-1,2-PROPANEDIOL HETNAM NA SODIUM ION HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM DHL 2-AMINO-ETHANETHIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM POL N-PROPANOL HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETSYN EDO ETHYLENE GLYCOL HETSYN PG0 PEG 6000 HETSYN DHL 2,3-DESHYDROLANTHIONINE HETSYN POL 1-PROPONOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 7 EOH 5(C2 H6 O) FORMUL 8 EDO 11(C2 H6 O2) FORMUL 10 MOH 9(C H4 O) FORMUL 13 IOD 12(I 1-) FORMUL 16 CL 9(CL 1-) FORMUL 21 PDO 5(C3 H8 O2) FORMUL 23 PGR C3 H8 O2 FORMUL 32 NA 2(NA 1+) FORMUL 33 PG0 C5 H12 O3 FORMUL 34 DHL 2(C2 H7 N S) FORMUL 44 PGE 2(C6 H14 O4) FORMUL 45 PEG 3(C4 H10 O3) FORMUL 50 POL C3 H8 O FORMUL 55 GOL 3(C3 H8 O3) FORMUL 61 IPA C3 H8 O FORMUL 74 HOH *84(H2 O) HELIX 1 AA1 PRO A 74 SER A 76 5 3 HELIX 2 AA2 LYS A 77 ASN A 84 1 8 HELIX 3 AA3 GLY A 101 ASP A 112 1 12 HELIX 4 AA4 PRO B 74 SER B 76 5 3 HELIX 5 AA5 LYS B 77 ASN B 83 1 7 HELIX 6 AA6 GLY B 101 PHE B 114 1 14 HELIX 7 AA7 PRO C 74 SER C 76 5 3 HELIX 8 AA8 LYS C 77 ASN C 84 1 8 HELIX 9 AA9 GLY C 101 PHE C 114 1 14 HELIX 10 AB1 PRO D 74 SER D 76 5 3 HELIX 11 AB2 LYS D 77 ASN D 84 1 8 HELIX 12 AB3 GLY D 101 ASP D 112 1 12 HELIX 13 AB4 PRO E 74 SER E 76 5 3 HELIX 14 AB5 LYS E 77 ASN E 83 1 7 HELIX 15 AB6 GLY E 101 PHE E 114 1 14 HELIX 16 AB7 PRO F 74 SER F 76 5 3 HELIX 17 AB8 LYS F 77 ASN F 84 1 8 HELIX 18 AB9 GLY F 101 ASP F 112 1 12 SHEET 1 AA1 4 ILE A 44 VAL A 46 0 SHEET 2 AA1 4 ARG A 49 ASN A 54 -1 O ARG A 49 N VAL A 46 SHEET 3 AA1 4 LYS A 61 VAL A 66 -1 O LYS A 63 N SER A 52 SHEET 4 AA1 4 ASP A 88 TYR A 91 -1 O LEU A 90 N VAL A 64 SHEET 1 AA2 4 ILE B 44 VAL B 46 0 SHEET 2 AA2 4 ARG B 49 THR B 56 -1 O PHE B 51 N ILE B 44 SHEET 3 AA2 4 GLY B 59 VAL B 66 -1 O GLY B 59 N THR B 56 SHEET 4 AA2 4 ASP B 88 TYR B 91 -1 O LEU B 90 N VAL B 64 SHEET 1 AA3 4 ILE C 44 VAL C 46 0 SHEET 2 AA3 4 ARG C 49 PHE C 55 -1 O PHE C 51 N ILE C 44 SHEET 3 AA3 4 ILE C 60 VAL C 66 -1 O LYS C 63 N SER C 52 SHEET 4 AA3 4 ASP C 88 TYR C 91 -1 O LEU C 90 N VAL C 64 SHEET 1 AA4 4 ILE D 44 VAL D 46 0 SHEET 2 AA4 4 ARG D 49 ASN D 54 -1 O ARG D 49 N VAL D 46 SHEET 3 AA4 4 LYS D 61 VAL D 66 -1 O LYS D 63 N SER D 52 SHEET 4 AA4 4 ASP D 88 TYR D 91 -1 O LEU D 90 N VAL D 64 SHEET 1 AA5 4 ILE E 44 VAL E 46 0 SHEET 2 AA5 4 ARG E 49 THR E 56 -1 O ARG E 49 N VAL E 46 SHEET 3 AA5 4 GLY E 59 VAL E 66 -1 O GLY E 59 N THR E 56 SHEET 4 AA5 4 ASP E 88 TYR E 91 -1 O LEU E 90 N VAL E 64 SHEET 1 AA6 4 ILE F 44 VAL F 46 0 SHEET 2 AA6 4 ARG F 49 PHE F 55 -1 O ARG F 49 N VAL F 46 SHEET 3 AA6 4 ILE F 60 VAL F 66 -1 O LYS F 63 N SER F 52 SHEET 4 AA6 4 ASP F 88 TYR F 91 -1 O LEU F 90 N VAL F 64 SSBOND 1 CYS A 45 CYS A 75 1555 1555 2.03 SSBOND 2 CYS A 92 CYS A 106 1555 1555 2.03 SSBOND 3 CYS B 45 CYS B 75 1555 1555 2.05 SSBOND 4 CYS B 92 CYS B 106 1555 1555 2.05 SSBOND 5 CYS C 45 CYS C 75 1555 1555 2.05 SSBOND 6 CYS C 92 CYS C 106 1555 1555 2.07 SSBOND 7 CYS D 45 CYS D 75 1555 1555 2.04 SSBOND 8 CYS D 92 CYS D 106 1555 1555 2.04 SSBOND 9 CYS E 45 CYS E 75 1555 1555 2.01 SSBOND 10 CYS E 92 CYS E 106 1555 1555 2.03 SSBOND 11 CYS F 92 CYS F 106 1555 1555 2.04 LINK OD2 ASP A 88 NA NA B 214 1555 1555 2.37 LINK O TYR B 91 NA NA B 214 1555 1555 2.86 LINK OD1 ASP C 97 NA NA C 209 1555 1555 2.32 CRYST1 46.860 70.060 78.950 90.00 95.29 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021340 0.000000 0.001976 0.00000 SCALE2 0.000000 0.014273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012720 0.00000