HEADER VIRAL PROTEIN 29-AUG-23 8U0T TITLE PRD-0038 RBD BOUND TO RHINOLOPHUS ALCYONE ACE2 (LOCAL REFINEMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOTENSIN-CONVERTING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACE2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PRD-0038; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RECEPTOR-BINDING DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHINOLOPHUS ALCYONE; SOURCE 3 ORGANISM_COMMON: HALCYON HORSESHOE BAT; SOURCE 4 ORGANISM_TAXID: 249024; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SARBECOVIRUS; SOURCE 10 ORGANISM_TAXID: 2509511; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARBECOVIRUSES, SPIKE GLYCOPROTEIN, FUSION PROTEIN, NEUTRALIZING KEYWDS 2 ANTIBODIES, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 3 FOR INFECTIOUS DISEASE, SSGCID, INHIBITOR, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.J.PARK,D.VEESLER,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS AUTHOR 2 DISEASE (SSGCID) REVDAT 2 27-DEC-23 8U0T 1 JRNL REVDAT 1 06-DEC-23 8U0T 0 JRNL AUTH J.LEE,S.K.ZEPEDA,Y.J.PARK,A.L.TAYLOR,J.QUISPE,C.STEWART, JRNL AUTH 2 E.M.LEAF,C.TREICHEL,D.CORTI,N.P.KING,T.N.STARR,D.VEESLER JRNL TITL BROAD RECEPTOR TROPISM AND IMMUNOGENICITY OF A CLADE 3 JRNL TITL 2 SARBECOVIRUS. JRNL REF CELL HOST MICROBE V. 31 1961 2023 JRNL REFN ESSN 1934-6069 JRNL PMID 37989312 JRNL DOI 10.1016/J.CHOM.2023.10.018 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : LEGINON, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 284934 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8U0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000277045. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PRD-0038 RBD BOUND TO R. REMARK 245 ALCYONE ACE2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 TRP A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 SER A 19 REMARK 465 ILE A 622 REMARK 465 SER A 623 REMARK 465 LEU A 624 REMARK 465 LYS A 625 REMARK 465 SER A 626 REMARK 465 ALA A 627 REMARK 465 LEU A 628 REMARK 465 GLY A 629 REMARK 465 GLU A 630 REMARK 465 LYS A 631 REMARK 465 ALA A 632 REMARK 465 TYR A 633 REMARK 465 GLU A 634 REMARK 465 ARG A 708 REMARK 465 SER A 709 REMARK 465 ARG A 710 REMARK 465 ILE A 711 REMARK 465 ASN A 712 REMARK 465 ASP A 713 REMARK 465 ALA A 714 REMARK 465 PHE A 715 REMARK 465 ARG A 716 REMARK 465 LEU A 717 REMARK 465 ASP A 718 REMARK 465 ASP A 719 REMARK 465 ASN A 720 REMARK 465 SER A 721 REMARK 465 LEU A 722 REMARK 465 GLU A 723 REMARK 465 PHE A 724 REMARK 465 LEU A 725 REMARK 465 GLY A 726 REMARK 465 ILE A 727 REMARK 465 GLN A 728 REMARK 465 PRO A 729 REMARK 465 THR A 730 REMARK 465 LEU A 731 REMARK 465 GLY A 732 REMARK 465 PRO A 733 REMARK 465 PRO A 734 REMARK 465 TYR A 735 REMARK 465 GLN A 736 REMARK 465 PRO A 737 REMARK 465 PRO A 738 REMARK 465 VAL A 739 REMARK 465 THR A 740 REMARK 465 HIS A 741 REMARK 465 HIS A 742 REMARK 465 HIS A 743 REMARK 465 HIS A 744 REMARK 465 HIS A 745 REMARK 465 HIS A 746 REMARK 465 HIS A 747 REMARK 465 HIS A 748 REMARK 465 GLY A 749 REMARK 465 GLY A 750 REMARK 465 SER A 751 REMARK 465 SER A 752 REMARK 465 GLY A 753 REMARK 465 LEU A 754 REMARK 465 ASN A 755 REMARK 465 ASP A 756 REMARK 465 ILE A 757 REMARK 465 PHE A 758 REMARK 465 GLU A 759 REMARK 465 ALA A 760 REMARK 465 GLN A 761 REMARK 465 LYS A 762 REMARK 465 ILE A 763 REMARK 465 GLU A 764 REMARK 465 TRP A 765 REMARK 465 HIS A 766 REMARK 465 GLU A 767 REMARK 465 MET B 290 REMARK 465 GLY B 291 REMARK 465 ILE B 292 REMARK 465 LEU B 293 REMARK 465 PRO B 294 REMARK 465 SER B 295 REMARK 465 PRO B 296 REMARK 465 GLY B 297 REMARK 465 MET B 298 REMARK 465 PRO B 299 REMARK 465 ALA B 300 REMARK 465 LEU B 301 REMARK 465 LEU B 302 REMARK 465 SER B 303 REMARK 465 LEU B 304 REMARK 465 VAL B 305 REMARK 465 SER B 306 REMARK 465 LEU B 307 REMARK 465 LEU B 308 REMARK 465 SER B 309 REMARK 465 VAL B 310 REMARK 465 LEU B 311 REMARK 465 LEU B 312 REMARK 465 MET B 313 REMARK 465 GLY B 314 REMARK 465 CYS B 315 REMARK 465 VAL B 316 REMARK 465 ALA B 317 REMARK 465 ARG B 318 REMARK 465 PHE B 319 REMARK 465 PRO B 320 REMARK 465 ASN B 321 REMARK 465 ILE B 322 REMARK 465 THR B 323 REMARK 465 ASN B 324 REMARK 465 LEU B 325 REMARK 465 SER B 349 REMARK 465 ASP B 350 REMARK 465 LEU B 381 REMARK 465 CYS B 382 REMARK 465 PHE B 383 REMARK 465 SER B 384 REMARK 465 LEU B 506 REMARK 465 LEU B 507 REMARK 465 ASN B 508 REMARK 465 ALA B 509 REMARK 465 PRO B 510 REMARK 465 ALA B 511 REMARK 465 THR B 512 REMARK 465 VAL B 513 REMARK 465 CYS B 514 REMARK 465 GLY B 515 REMARK 465 PRO B 516 REMARK 465 LYS B 517 REMARK 465 LYS B 518 REMARK 465 SER B 519 REMARK 465 THR B 520 REMARK 465 HIS B 521 REMARK 465 HIS B 522 REMARK 465 HIS B 523 REMARK 465 HIS B 524 REMARK 465 HIS B 525 REMARK 465 HIS B 526 REMARK 465 HIS B 527 REMARK 465 HIS B 528 REMARK 465 GLY B 529 REMARK 465 GLY B 530 REMARK 465 SER B 531 REMARK 465 SER B 532 REMARK 465 GLY B 533 REMARK 465 LEU B 534 REMARK 465 ASN B 535 REMARK 465 ASP B 536 REMARK 465 ILE B 537 REMARK 465 PHE B 538 REMARK 465 GLU B 539 REMARK 465 ALA B 540 REMARK 465 GLN B 541 REMARK 465 LYS B 542 REMARK 465 ILE B 543 REMARK 465 GLU B 544 REMARK 465 TRP B 545 REMARK 465 HIS B 546 REMARK 465 GLU B 547 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 20 OG1 CG2 REMARK 470 SER A 55 OG REMARK 470 ASP A 56 CG OD1 OD2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 SER A 70 OG REMARK 470 SER A 77 OG REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 SER A 84 OG REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 HIS A 89 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 SER A 103 OG REMARK 470 SER A 105 OG REMARK 470 SER A 109 OG REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 SER A 118 OG REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 GLN A 139 CG CD OE1 NE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 ASN A 150 CG OD1 ND2 REMARK 470 SER A 155 OG REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 ASP A 206 CG OD1 OD2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 SER A 212 OG REMARK 470 ASP A 214 CG OD1 OD2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 SER A 218 OG REMARK 470 ASP A 220 CG OD1 OD2 REMARK 470 SER A 257 OG REMARK 470 THR A 301 OG1 CG2 REMARK 470 ASP A 303 CG OD1 OD2 REMARK 470 THR A 324 OG1 CG2 REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 SER A 331 OG REMARK 470 THR A 334 OG1 CG2 REMARK 470 ASP A 335 CG OD1 OD2 REMARK 470 ASP A 338 CG OD1 OD2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 SER A 409 OG REMARK 470 SER A 425 OG REMARK 470 ASP A 427 CG OD1 OD2 REMARK 470 LEU A 429 CG CD1 CD2 REMARK 470 ASP A 536 CG OD1 OD2 REMARK 470 SER A 559 OG REMARK 470 SER A 568 OG REMARK 470 ASP A 578 CG OD1 OD2 REMARK 470 SER A 602 OG REMARK 470 ASP A 615 CG OD1 OD2 REMARK 470 ARG A 621 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 639 CG CD OE1 OE2 REMARK 470 SER A 645 OG REMARK 470 SER A 646 OG REMARK 470 LEU A 656 CG CD1 CD2 REMARK 470 LYS A 657 CG CD CE NZ REMARK 470 THR A 658 OG1 CG2 REMARK 470 LYS A 659 CG CD CE NZ REMARK 470 ASN A 660 CG OD1 ND2 REMARK 470 GLN A 661 CG CD OE1 NE2 REMARK 470 THR A 662 OG1 CG2 REMARK 470 ARG A 678 CG CD NE CZ NH1 NH2 REMARK 470 SER A 680 OG REMARK 470 THR A 686 OG1 CG2 REMARK 470 SER A 687 OG REMARK 470 ARG A 689 CG CD NE CZ NH1 NH2 REMARK 470 SER A 692 OG REMARK 470 ASP A 693 CG OD1 OD2 REMARK 470 GLU A 701 CG CD OE1 OE2 REMARK 470 SER A 707 OG REMARK 470 GLN B 330 CG CD OE1 NE2 REMARK 470 LEU B 346 CG CD1 CD2 REMARK 470 ILE B 348 CG1 CG2 CD1 REMARK 470 VAL B 352 CG1 CG2 REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 SER B 356 OG REMARK 470 VAL B 357 CG1 CG2 REMARK 470 TYR B 359 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 361 OG REMARK 470 SER B 362 OG REMARK 470 SER B 363 OG REMARK 470 SER B 364 OG REMARK 470 SER B 366 OG REMARK 470 THR B 367 OG1 CG2 REMARK 470 LYS B 377 CG CD CE NZ REMARK 470 LEU B 378 CG CD1 CD2 REMARK 470 ASN B 379 CG OD1 ND2 REMARK 470 ASP B 380 CG OD1 OD2 REMARK 470 ASP B 397 CG OD1 OD2 REMARK 470 THR B 406 OG1 CG2 REMARK 470 ASP B 418 CG OD1 OD2 REMARK 470 ASP B 419 CG OD1 OD2 REMARK 470 THR B 421 OG1 CG2 REMARK 470 SER B 431 OG REMARK 470 VAL B 432 CG1 CG2 REMARK 470 SER B 434 OG REMARK 470 GLN B 436 CG CD OE1 NE2 REMARK 470 ASN B 438 CG OD1 ND2 REMARK 470 ASP B 456 CG OD1 OD2 REMARK 470 SER B 458 OG REMARK 470 VAL B 460 CG1 CG2 REMARK 470 SER B 464 OG REMARK 470 THR B 468 OG1 CG2 REMARK 470 SER B 470 OG REMARK 470 SER B 471 OG REMARK 470 SER B 473 OG REMARK 470 GLN B 474 CG CD OE1 NE2 REMARK 470 SER B 503 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 134 CD ARG A 134 NE 0.106 REMARK 500 GLU A 402 CA GLU A 402 CB -0.209 REMARK 500 GLU A 402 CG GLU A 402 CD -0.126 REMARK 500 GLU A 402 CD GLU A 402 OE1 -0.080 REMARK 500 GLU A 402 C GLU A 402 O -0.200 REMARK 500 ASN A 546 C ASN A 546 O 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 135 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 LEU A 351 CD1 - CG - CD2 ANGL. DEV. = 23.0 DEGREES REMARK 500 PRO B 327 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO B 375 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU B 475 CD1 - CG - CD2 ANGL. DEV. = 23.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 -18.73 -140.66 REMARK 500 THR A 154 -45.18 -136.33 REMARK 500 GLN A 300 1.18 -69.10 REMARK 500 CYS A 361 71.07 -118.86 REMARK 500 ALA A 501 -16.91 -154.19 REMARK 500 LYS A 577 -58.47 -129.63 REMARK 500 ARG A 678 -30.43 77.50 REMARK 500 ARG A 689 9.82 55.70 REMARK 500 PRO B 327 71.77 -69.59 REMARK 500 LYS B 435 -161.58 -117.38 REMARK 500 SER B 471 115.07 68.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 402 10.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41784 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-41786 RELATED DB: EMDB DBREF1 8U0T A 1 740 UNP A0A0N7IQX6_RHIAY DBREF2 8U0T A A0A0N7IQX6 1 740 DBREF 8U0T B 290 547 PDB 8U0T 8U0T 290 547 SEQADV 8U0T HIS A 741 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 742 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 743 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 744 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 745 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 746 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 747 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 748 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T GLY A 749 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T GLY A 750 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T SER A 751 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T SER A 752 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T GLY A 753 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T LEU A 754 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T ASN A 755 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T ASP A 756 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T ILE A 757 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T PHE A 758 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T GLU A 759 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T ALA A 760 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T GLN A 761 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T LYS A 762 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T ILE A 763 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T GLU A 764 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T TRP A 765 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T HIS A 766 UNP A0A0N7IQX EXPRESSION TAG SEQADV 8U0T GLU A 767 UNP A0A0N7IQX EXPRESSION TAG SEQRES 1 A 767 MET SER GLY SER SER TRP LEU PHE LEU SER LEU VAL ALA SEQRES 2 A 767 VAL ALA ALA ALA GLN SER THR PRO GLU ASP LEU ALA LYS SEQRES 3 A 767 ILE PHE LEU ASP ASN PHE ASN SER GLU ALA GLU ASN LEU SEQRES 4 A 767 SER HIS GLN SER SER LEU ALA SER TRP GLU TYR ASN THR SEQRES 5 A 767 ASN ILE SER ASP GLU ASN ILE GLN LYS MET ASP GLU ALA SEQRES 6 A 767 GLY ALA LYS TRP SER ASP PHE TYR GLU THR GLN SER LYS SEQRES 7 A 767 HIS ALA LYS ASN PHE SER LEU GLU GLU ILE HIS ASN ASP SEQRES 8 A 767 THR VAL LYS LEU GLN LEU GLN ILE LEU GLN GLN SER GLY SEQRES 9 A 767 SER PRO VAL LEU SER GLU ASP LYS SER LYS ARG LEU ASN SEQRES 10 A 767 SER ILE LEU ASN ALA MET SER THR ILE TYR SER THR GLY SEQRES 11 A 767 LYS VAL CYS ARG PRO ASN ASN PRO GLN GLU CYS LEU LEU SEQRES 12 A 767 LEU GLU PRO GLY LEU ASP ASN ILE MET GLY THR SER LYS SEQRES 13 A 767 ASP TYR ASN GLU ARG LEU TRP ALA TRP GLU GLY TRP ARG SEQRES 14 A 767 ALA GLU VAL GLY LYS GLN LEU ARG PRO LEU TYR GLU GLU SEQRES 15 A 767 TYR VAL VAL LEU LYS ASN GLU MET ALA ARG GLY TYR HIS SEQRES 16 A 767 TYR GLU ASP TYR GLY ASP TYR TRP ARG ARG ASP TYR GLU SEQRES 17 A 767 THR GLU GLY SER PRO ASP LEU GLU TYR SER ARG ASP GLN SEQRES 18 A 767 LEU THR LYS ASP VAL GLU ARG ILE PHE ALA GLU ILE LYS SEQRES 19 A 767 PRO LEU TYR GLU GLN LEU HIS ALA TYR VAL ARG THR LYS SEQRES 20 A 767 LEU MET ASP THR TYR PRO PHE HIS ILE SER PRO THR GLY SEQRES 21 A 767 CYS LEU PRO ALA HIS LEU LEU GLY ASP MET TRP GLY ARG SEQRES 22 A 767 PHE TRP THR ASN LEU TYR PRO LEU THR VAL PRO PHE ALA SEQRES 23 A 767 GLN LYS PRO ASN ILE ASP VAL THR ASP ALA MET LEU ASN SEQRES 24 A 767 GLN THR TRP ASP ALA LYS ARG ILE PHE LYS GLU ALA GLU SEQRES 25 A 767 LYS PHE PHE VAL SER ILE GLY LEU PRO HIS MET THR GLU SEQRES 26 A 767 GLY PHE TRP ASN ASN SER MET LEU THR ASP PRO GLY ASP SEQRES 27 A 767 GLY ARG LYS VAL VAL CYS HIS PRO THR ALA TRP ASP LEU SEQRES 28 A 767 GLY LYS GLY ASP PHE ARG ILE LYS MET CYS THR LYS VAL SEQRES 29 A 767 THR MET GLU ASP PHE LEU THR ALA HIS HIS GLU MET GLY SEQRES 30 A 767 HIS ILE GLN TYR ASP MET ALA TYR ALA SER GLN PRO TYR SEQRES 31 A 767 LEU LEU ARG ASN GLY ALA ASN GLU GLY PHE HIS GLU ALA SEQRES 32 A 767 VAL GLY GLU VAL MET SER LEU SER VAL ALA THR PRO LYS SEQRES 33 A 767 HIS LEU LYS THR MET GLY LEU LEU SER PRO ASP PHE LEU SEQRES 34 A 767 GLU ASP ASN GLU THR GLU ILE ASN PHE LEU PHE LYS GLN SEQRES 35 A 767 ALA LEU THR ILE VAL GLY THR LEU PRO PHE THR TYR MET SEQRES 36 A 767 LEU GLU LYS TRP ARG TRP MET VAL PHE LYS GLY GLU ILE SEQRES 37 A 767 PRO LYS GLU GLU TRP MET THR LYS TRP TRP GLU MET LYS SEQRES 38 A 767 ARG LYS ILE VAL GLY VAL VAL GLU PRO VAL PRO HIS ASP SEQRES 39 A 767 GLU THR TYR CYS ASP PRO ALA SER LEU PHE HIS VAL ALA SEQRES 40 A 767 ASN ASP TYR SER PHE ILE ARG TYR TYR THR ARG THR ILE SEQRES 41 A 767 PHE GLU PHE GLN PHE HIS GLU ALA LEU CYS ARG ILE ALA SEQRES 42 A 767 LYS HIS ASP GLY PRO LEU HIS LYS CYS ASP ILE SER ASN SEQRES 43 A 767 SER THR ASP ALA GLY LYS LYS LEU HIS GLN MET LEU SER SEQRES 44 A 767 VAL GLY LYS SER GLN PRO TRP THR SER VAL LEU LYS ASP SEQRES 45 A 767 PHE VAL ASP SER LYS ASP MET ASP VAL GLY PRO LEU LEU SEQRES 46 A 767 ARG TYR PHE GLU PRO LEU TYR THR TRP LEU LYS GLU GLN SEQRES 47 A 767 ASN ARG ASN SER PHE VAL GLY TRP ASN THR ASP TRP SER SEQRES 48 A 767 PRO TYR ALA ASP GLN SER ILE LYS VAL ARG ILE SER LEU SEQRES 49 A 767 LYS SER ALA LEU GLY GLU LYS ALA TYR GLU TRP ASN ASN SEQRES 50 A 767 ASN GLU MET TYR LEU PHE ARG SER SER VAL ALA TYR ALA SEQRES 51 A 767 MET ARG GLU TYR PHE LEU LYS THR LYS ASN GLN THR ILE SEQRES 52 A 767 LEU PHE GLY GLU GLU ASP VAL TRP VAL SER ASN LEU LYS SEQRES 53 A 767 PRO ARG ILE SER PHE ASN PHE TYR VAL THR SER PRO ARG SEQRES 54 A 767 ASN LEU SER ASP ILE ILE PRO ARG PRO GLU VAL GLU GLY SEQRES 55 A 767 ALA ILE ARG MET SER ARG SER ARG ILE ASN ASP ALA PHE SEQRES 56 A 767 ARG LEU ASP ASP ASN SER LEU GLU PHE LEU GLY ILE GLN SEQRES 57 A 767 PRO THR LEU GLY PRO PRO TYR GLN PRO PRO VAL THR HIS SEQRES 58 A 767 HIS HIS HIS HIS HIS HIS HIS GLY GLY SER SER GLY LEU SEQRES 59 A 767 ASN ASP ILE PHE GLU ALA GLN LYS ILE GLU TRP HIS GLU SEQRES 1 B 258 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 B 258 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 B 258 VAL ALA ARG PHE PRO ASN ILE THR ASN LEU CYS PRO PHE SEQRES 4 B 258 GLY GLN VAL PHE ASN ALA SER LYS PHE PRO SER VAL TYR SEQRES 5 B 258 ALA TRP GLU ARG LEU ARG ILE SER ASP CYS VAL ALA ASP SEQRES 6 B 258 TYR SER VAL LEU TYR ASN SER SER SER SER PHE SER THR SEQRES 7 B 258 PHE LYS CYS TYR GLY VAL SER PRO THR LYS LEU ASN ASP SEQRES 8 B 258 LEU CYS PHE SER SER VAL TYR ALA ASP TYR PHE VAL VAL SEQRES 9 B 258 LYS GLY ASP ASP VAL ARG GLN ILE ALA PRO ALA GLN THR SEQRES 10 B 258 GLY VAL ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP ASP SEQRES 11 B 258 PHE THR GLY CYS VAL LEU ALA TRP ASN THR ASN SER VAL SEQRES 12 B 258 ASP SER LYS GLN GLY ASN ASN PHE TYR TYR ARG LEU PHE SEQRES 13 B 258 ARG HIS GLY LYS ILE LYS PRO TYR GLU ARG ASP ILE SER SEQRES 14 B 258 ASN VAL LEU TYR ASN SER ALA GLY GLY THR CYS SER SER SEQRES 15 B 258 THR SER GLN LEU GLY CYS TYR GLU PRO LEU LYS SER TYR SEQRES 16 B 258 GLY PHE THR PRO THR VAL GLY VAL GLY TYR GLN PRO TYR SEQRES 17 B 258 ARG VAL VAL VAL LEU SER PHE GLU LEU LEU ASN ALA PRO SEQRES 18 B 258 ALA THR VAL CYS GLY PRO LYS LYS SER THR HIS HIS HIS SEQRES 19 B 258 HIS HIS HIS HIS HIS GLY GLY SER SER GLY LEU ASN ASP SEQRES 20 B 258 ILE PHE GLU ALA GLN LYS ILE GLU TRP HIS GLU HET NAG A 801 14 HET NAG A 802 14 HET NAG A 803 14 HET NAG A 804 14 HET NAG A 805 14 HET NAG A 806 14 HET NAG A 807 14 HET ZN A 808 1 HET NAG B 601 14 HET NAG B 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 10 ZN ZN 2+ HELIX 1 AA1 THR A 20 ASN A 53 1 34 HELIX 2 AA2 SER A 55 ALA A 80 1 26 HELIX 3 AA3 LYS A 81 PHE A 83 5 3 HELIX 4 AA4 SER A 84 ILE A 88 5 5 HELIX 5 AA5 ASN A 90 GLN A 102 1 13 HELIX 6 AA6 SER A 109 THR A 129 1 21 HELIX 7 AA7 LEU A 148 GLY A 153 1 6 HELIX 8 AA8 ASP A 157 VAL A 172 1 16 HELIX 9 AA9 VAL A 172 GLY A 193 1 22 HELIX 10 AB1 ASP A 198 ARG A 204 1 7 HELIX 11 AB2 ARG A 205 GLU A 208 5 4 HELIX 12 AB3 SER A 218 ASP A 220 5 3 HELIX 13 AB4 GLN A 221 MET A 249 1 29 HELIX 14 AB5 HIS A 265 LEU A 267 5 3 HELIX 15 AB6 TRP A 275 THR A 282 5 8 HELIX 16 AB7 VAL A 293 GLN A 300 1 8 HELIX 17 AB8 ASP A 303 ILE A 318 1 16 HELIX 18 AB9 THR A 324 SER A 331 1 8 HELIX 19 AC1 MET A 366 TYR A 385 1 20 HELIX 20 AC2 PRO A 389 ARG A 393 5 5 HELIX 21 AC3 ASN A 397 SER A 411 1 15 HELIX 22 AC4 THR A 414 GLY A 422 1 9 HELIX 23 AC5 ASP A 431 VAL A 447 1 17 HELIX 24 AC6 THR A 449 GLY A 466 1 18 HELIX 25 AC7 PRO A 469 GLU A 471 5 3 HELIX 26 AC8 GLU A 472 VAL A 485 1 14 HELIX 27 AC9 LEU A 503 ASN A 508 1 6 HELIX 28 AD1 ILE A 513 ALA A 533 1 21 HELIX 29 AD2 PRO A 538 CYS A 542 5 5 HELIX 30 AD3 SER A 547 SER A 559 1 13 HELIX 31 AD4 PRO A 565 ASP A 575 1 11 HELIX 32 AD5 VAL A 581 PHE A 588 1 8 HELIX 33 AD6 PHE A 588 ASN A 599 1 12 HELIX 34 AD7 ASN A 636 LYS A 659 1 24 HELIX 35 AD8 GLY A 666 GLU A 668 5 3 HELIX 36 AD9 PRO A 696 SER A 707 1 12 HELIX 37 AE1 PRO B 327 VAL B 331 5 5 HELIX 38 AE2 SER B 339 TRP B 343 5 5 HELIX 39 AE3 ASP B 396 ILE B 401 5 6 HELIX 40 AE4 GLY B 407 ASN B 413 1 7 HELIX 41 AE5 THR B 429 SER B 434 1 6 HELIX 42 AE6 GLY B 491 TYR B 494 5 4 SHEET 1 AA1 2 LYS A 131 ARG A 134 0 SHEET 2 AA1 2 ASN A 137 LEU A 143 -1 O LEU A 142 N VAL A 132 SHEET 1 AA2 2 LEU A 262 PRO A 263 0 SHEET 2 AA2 2 VAL A 487 VAL A 488 1 O VAL A 488 N LEU A 262 SHEET 1 AA3 2 THR A 347 GLY A 352 0 SHEET 2 AA3 2 ASP A 355 LYS A 359 -1 O ARG A 357 N TRP A 349 SHEET 1 AA4 3 ILE A 618 VAL A 620 0 SHEET 2 AA4 3 SER A 680 VAL A 685 -1 O PHE A 681 N VAL A 620 SHEET 3 AA4 3 VAL A 670 LYS A 676 -1 N SER A 673 O ASN A 682 SHEET 1 AA5 5 GLU B 344 ILE B 348 0 SHEET 2 AA5 5 VAL B 386 LYS B 394 -1 O ALA B 388 N LEU B 346 SHEET 3 AA5 5 PRO B 496 PHE B 504 -1 O VAL B 501 N ASP B 389 SHEET 4 AA5 5 GLY B 422 ASN B 428 -1 N CYS B 423 O LEU B 502 SHEET 5 AA5 5 THR B 367 TYR B 371 -1 N LYS B 369 O VAL B 424 SHEET 1 AA6 2 TYR B 441 ARG B 443 0 SHEET 2 AA6 2 LEU B 481 SER B 483 -1 O LYS B 482 N TYR B 442 SHEET 1 AA7 2 TYR B 462 ASN B 463 0 SHEET 2 AA7 2 CYS B 477 TYR B 478 -1 O TYR B 478 N TYR B 462 SSBOND 1 CYS A 133 CYS A 141 1555 1555 2.22 SSBOND 2 CYS A 344 CYS A 361 1555 1555 2.03 SSBOND 3 CYS A 530 CYS A 542 1555 1555 2.06 SSBOND 4 CYS B 326 CYS B 351 1555 1555 2.06 SSBOND 5 CYS B 370 CYS B 423 1555 1555 2.13 SSBOND 6 CYS B 469 CYS B 477 1555 1555 2.05 LINK ND2 ASN A 53 C1 NAG A 803 1555 1555 1.51 LINK ND2 ASN A 82 C1 NAG A 807 1555 1555 1.52 LINK ND2 ASN A 90 C1 NAG A 801 1555 1555 1.50 LINK ND2 ASN A 299 C1 NAG A 804 1555 1555 1.52 LINK ND2 ASN A 329 C1 NAG A 805 1555 1555 1.49 LINK ND2 ASN A 432 C1 NAG A 806 1555 1555 1.50 LINK ND2 ASN A 546 C1 NAG A 802 1555 1555 1.52 LINK ND2 ASN B 333 C1 NAG B 601 1555 1555 1.51 LINK ND2 ASN B 360 C1 NAG B 602 1555 1555 1.50 LINK OE1 GLU A 402 ZN ZN A 808 1555 1555 2.29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000