HEADER LUMINESCENT PROTEIN 29-AUG-23 8U0Y TITLE BACTERIAL PROTEIN CPX CAVEAT 8U0Y PUB A 201 HAS WRONG CHIRALITY AT ATOM C4A PUB A 202 HAS CAVEAT 2 8U0Y WRONG CHIRALITY AT ATOM C4A PUB B 201 HAS WRONG CHIRALITY CAVEAT 3 8U0Y AT ATOM C4A PUB B 202 HAS WRONG CHIRALITY AT ATOM C4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: FLUORESCENT PROTEIN; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: RECEPTOR A; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 4; COMPND 12 MOLECULE: RECEPTOR B; COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CERAMIUM SECUNDATUM; SOURCE 3 ORGANISM_TAXID: 193556; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: CERAMIUM SECUNDATUM; SOURCE 6 ORGANISM_TAXID: 193556; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 GENE: TRAV4D-4; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 4; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL PROTEIN, BACTERIAL LIGHT HARVESTING COMPLEX, PHYCOBILISOME, KEYWDS 2 LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.S.GULLY,J.ROSSJOHN REVDAT 1 04-SEP-24 8U0Y 0 JRNL AUTH B.S.GULLY,J.ROSSJOHN JRNL TITL BACTERIAL PROTEIN CPX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.0800 - 7.4000 0.99 2785 163 0.2193 0.1996 REMARK 3 2 7.4000 - 5.8700 1.00 2665 132 0.2475 0.2681 REMARK 3 3 5.8700 - 5.1300 1.00 2598 158 0.2277 0.2538 REMARK 3 4 5.1300 - 4.6600 1.00 2600 140 0.2070 0.2407 REMARK 3 5 4.6600 - 4.3300 1.00 2566 159 0.1863 0.2238 REMARK 3 6 4.3300 - 4.0700 1.00 2567 140 0.1998 0.2556 REMARK 3 7 4.0700 - 3.8700 1.00 2555 131 0.2163 0.2252 REMARK 3 8 3.8700 - 3.7000 1.00 2573 121 0.2229 0.2581 REMARK 3 9 3.7000 - 3.5600 1.00 2562 128 0.2525 0.3054 REMARK 3 10 3.5600 - 3.4300 1.00 2543 144 0.2474 0.2833 REMARK 3 11 3.4300 - 3.3300 1.00 2574 117 0.2660 0.2788 REMARK 3 12 3.3300 - 3.2300 1.00 2555 113 0.2656 0.3068 REMARK 3 13 3.2300 - 3.1500 1.00 2554 132 0.2781 0.3318 REMARK 3 14 3.1500 - 3.0700 1.00 2535 136 0.2983 0.3224 REMARK 3 15 3.0700 - 3.0000 1.00 2524 138 0.3045 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.375 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6003 REMARK 3 ANGLE : 1.422 8190 REMARK 3 CHIRALITY : 0.063 917 REMARK 3 PLANARITY : 0.010 1053 REMARK 3 DIHEDRAL : 20.595 2086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40827 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 96.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.5, 1.2 M REMARK 280 AMMONIUM SULFATE, 5% W/V D-SORBITOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 101250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 185350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -710.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 443.58000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 221.79000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 384.15155 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 221.79000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 384.15155 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 443.58000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK C 126 REMARK 465 UNK C 127 REMARK 465 UNK C 128 REMARK 465 UNK C 129 REMARK 465 UNK C 130 REMARK 465 UNK C 131 REMARK 465 UNK C 145 REMARK 465 UNK C 146 REMARK 465 UNK C 147 REMARK 465 UNK C 148 REMARK 465 UNK D 204 REMARK 465 UNK D 205 REMARK 465 UNK D 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 109 SG REMARK 470 GLN C 112 CG CD OE1 NE2 REMARK 470 ASP C 115 CG OD1 OD2 REMARK 470 GLN C 120 CG CD OE1 NE2 REMARK 470 LEU C 121 CG CD1 CD2 REMARK 470 ARG C 122 CG CD NE CZ NH1 NH2 REMARK 470 SER C 124 OG REMARK 470 LYS C 125 CG CD CE NZ REMARK 470 GLN C 140 CG CD OE1 NE2 REMARK 470 ASP C 150 CG OD1 OD2 REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 PHE C 180 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE C 186 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 187 CG OD1 ND2 REMARK 470 ASN C 188 CG OD1 ND2 REMARK 470 ILE C 191 CG1 CG2 CD1 REMARK 470 GLU C 193 CG CD OE1 OE2 REMARK 470 LYS D 41 CG CD CE NZ REMARK 470 LYS D 42 CG CD CE NZ REMARK 470 ARG D 63 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 68 CG CD OE1 NE2 REMARK 470 ARG D 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 80 CG CD CE NZ REMARK 470 GLU D 83 CG CD OE1 OE2 REMARK 470 GLU D 85 CG CD OE1 OE2 REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 GLU D 128 CG CD OE1 OE2 REMARK 470 SER D 135 OG REMARK 470 GLN D 138 CG CD OE1 NE2 REMARK 470 LYS D 139 CG CD CE NZ REMARK 470 VAL D 160 CG1 CG2 REMARK 470 ASN D 161 CG OD1 ND2 REMARK 470 LYS D 163 CG CD CE NZ REMARK 470 GLN D 174 CG CD OE1 NE2 REMARK 470 LYS D 177 CG CD CE NZ REMARK 470 GLN D 179 CG CD OE1 NE2 REMARK 470 LEU D 182 CG CD1 CD2 REMARK 470 ASN D 183 CG OD1 ND2 REMARK 470 ARG D 194 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 199 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP D 200 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 200 CZ3 CH2 REMARK 470 GLN D 201 CG CD OE1 NE2 REMARK 470 PHE D 207 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 218 CG CD OE1 OE2 REMARK 470 ASN D 219 CG OD1 ND2 REMARK 470 LYS D 228 CG CD CE NZ REMARK 470 GLU D 237 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET B 151 C REMARK 480 THR D 27 CG2 REMARK 480 SER D 135 O REMARK 480 PRO D 175 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 35 ND PUB B 202 1.32 REMARK 500 OD2 ASP B 54 NB PUB B 203 1.33 REMARK 500 O THR B 154 NA PUB B 202 1.34 REMARK 500 SG CYS B 158 CAA PUB B 202 1.54 REMARK 500 O HOH B 306 O HOH B 307 2.02 REMARK 500 SG CYS A 139 CAA PUB A 202 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 THR C 17 O2B PUB B 203 9765 1.38 REMARK 500 O HOH B 305 O HOH B 310 3775 2.08 REMARK 500 O ARG A 17 OH TYR B 95 10775 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 54 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 CYS B 61 CA - CB - SG ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 3 -167.67 -118.72 REMARK 500 SER C 51 61.46 37.91 REMARK 500 GLU C 90 19.30 -68.81 REMARK 500 ALA C 91 175.78 -57.34 REMARK 500 ASN D 18 -178.36 -63.40 REMARK 500 ASP D 39 -179.41 -67.48 REMARK 500 ASN D 52 -109.39 56.45 REMARK 500 GLU D 59 67.75 -102.86 REMARK 500 SER D 70 -60.84 -97.36 REMARK 500 ALA D 88 -173.82 -176.11 REMARK 500 TYR D 150 138.93 -173.58 REMARK 500 LEU D 182 72.92 -104.95 REMARK 500 ASN D 183 -129.03 52.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 307 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 308 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH B 309 DISTANCE = 8.77 ANGSTROMS REMARK 525 HOH B 310 DISTANCE = 11.89 ANGSTROMS DBREF 8U0Y A 1 164 PDB 8U0Y 8U0Y 1 164 DBREF 8U0Y B 1 176 PDB 8U0Y 8U0Y 1 176 DBREF 8U0Y C 3 90 UNP Q5R1F7 Q5R1F7_MOUSE 23 110 DBREF 8U0Y C 91 198 PDB 8U0Y 8U0Y 91 198 DBREF 8U0Y D 3 239 PDB 8U0Y 8U0Y 3 239 SEQRES 1 A 164 MET LYS SER VAL ILE THR THR THR ILE SER ALA ALA ASP SEQRES 2 A 164 ALA ALA GLY ARG PHE PRO SER SER SER ASP LEU GLU SER SEQRES 3 A 164 VAL GLN GLY ASN ILE GLN ARG ALA ALA SER ARG LEU GLU SEQRES 4 A 164 ALA ALA GLU LYS LEU ALA GLY ASN HIS GLU ALA VAL VAL SEQRES 5 A 164 LYS GLU ALA GLY ASP ALA CYS PHE ALA LYS TYR SER TYR SEQRES 6 A 164 LEU LYS ASN PRO GLY GLU ALA GLY ASP SER GLN GLU LYS SEQRES 7 A 164 ILE ASN LYS CYS TYR ARG ASP ILE ASP HIS TYR MET ARG SEQRES 8 A 164 LEU ILE ASN TYR SER LEU VAL VAL GLY GLY THR GLY PRO SEQRES 9 A 164 LEU ASP GLU TRP CYS ILE ALA GLY ALA ARG GLU VAL TYR SEQRES 10 A 164 ARG THR LEU ASN LEU PRO SER SER SER TYR VAL ALA ALA SEQRES 11 A 164 PHE VAL PHE THR ARG ASP ARG LEU CYS VAL PRO ARG ASP SEQRES 12 A 164 MET SER ALA GLN ALA GLY VAL GLU TYR GLY ALA ALA LEU SEQRES 13 A 164 ASP TYR VAL ILE ASN SER LEU CYS SEQRES 1 B 176 MET LEU ASP ALA PHE SER ARG VAL VAL VAL ASN SER ASP SEQRES 2 B 176 SER LYS ALA ALA TYR VAL GLY GLY SER ASP LEU GLN ALA SEQRES 3 B 176 LEU LYS THR PHE ILE ALA ASP GLY ASN LYS ARG LEU ASP SEQRES 4 B 176 ALA VAL ASN SER ILE VAL SER ASN ALA SER CYS ILE VAL SEQRES 5 B 176 SER ASP ALA VAL SER GLY MET ILE CYS GLU ASN PRO GLY SEQRES 6 B 176 LEU ILE ALA PRO GLY GLY ASN CYS TYR THR ASN ARG ARG SEQRES 7 B 176 MET ALA ALA CYS LEU ARG ASP GLY GLU ILE ILE LEU ARG SEQRES 8 B 176 TYR THR SER TYR ALA LEU LEU ALA GLY ASP SER SER VAL SEQRES 9 B 176 LEU GLU ASP ARG CYS LEU ASN GLY LEU LYS GLU THR TYR SEQRES 10 B 176 ILE ALA LEU GLY VAL PRO THR ASN SER SER VAL ARG ALA SEQRES 11 B 176 VAL SER ILE MET LYS SER ALA ALA VAL ALA PHE ILE SER SEQRES 12 B 176 ASN THR ALA SER GLN ARG LYS MET ALA THR THR ASP GLY SEQRES 13 B 176 ASP CYS SER ALA LEU SER SER GLU VAL ALA SER TYR CYS SEQRES 14 B 176 ASP LYS VAL ALA ALA ALA ILE SEQRES 1 C 196 GLN VAL GLU GLN SER PRO SER ALA LEU SER LEU HIS GLU SEQRES 2 C 196 GLY THR SER SER ALA LEU ARG CYS ASN PHE THR THR THR SEQRES 3 C 196 THR ARG SER VAL GLN TRP PHE ARG GLN ASN SER ARG GLY SEQRES 4 C 196 SER LEU ILE ASN LEU PHE TYR LEU ALA SER GLY THR LYS SEQRES 5 C 196 GLU ASN GLY ARG LEU LYS SER ALA PHE ASP SER LYS GLU SEQRES 6 C 196 LEU TYR SER THR LEU HIS ILE ARG ASP ALA GLN LEU GLU SEQRES 7 C 196 ASP SER GLY THR TYR PHE CYS ALA ALA GLU ALA GLY SER SEQRES 8 C 196 PHE ASN LYS LEU THR PHE GLY ALA GLY THR ARG LEU ALA SEQRES 9 C 196 VAL SER PRO TYR ILE GLN ASN PRO ASP PRO ALA VAL TYR SEQRES 10 C 196 GLN LEU ARG ASP SER LYS UNK UNK UNK UNK UNK UNK CYS SEQRES 11 C 196 LEU PHE THR ASP PHE ASP SER GLN THR ASN VAL SER UNK SEQRES 12 C 196 UNK UNK UNK SER ASP VAL TYR ILE THR ASP LYS CYS VAL SEQRES 13 C 196 LEU ASP MET ARG SER MET ASP PHE LYS SER ASN SER ALA SEQRES 14 C 196 VAL ALA TRP SER ASN LYS SER ASP PHE ALA CYS ALA ASN SEQRES 15 C 196 ALA PHE ASN ASN SER ILE ILE PRO GLU ASP THR PHE PHE SEQRES 16 C 196 PRO SEQRES 1 D 237 THR ALA VAL PHE GLN THR PRO ASN TYR HIS VAL THR GLN SEQRES 2 D 237 VAL GLY ASN GLU VAL SER PHE ASN CYS LYS GLN THR LEU SEQRES 3 D 237 GLY HIS ASP THR MET TYR TRP TYR LYS GLN ASP SER LYS SEQRES 4 D 237 LYS LEU LEU LYS ILE MET PHE SER TYR ASN ASN LYS GLN SEQRES 5 D 237 LEU ILE VAL ASN GLU THR VAL PRO ARG ARG PHE SER PRO SEQRES 6 D 237 GLN SER SER ASP LYS ALA HIS LEU ASN LEU ARG ILE LYS SEQRES 7 D 237 SER VAL GLU PRO GLU ASP SER ALA VAL TYR LEU CYS ALA SEQRES 8 D 237 SER SER PHE ARG TRP VAL GLY GLU GLN TYR PHE GLY PRO SEQRES 9 D 237 GLY THR ARG LEU THR VAL LEU GLU ASP LEU LYS ASN VAL SEQRES 10 D 237 PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER ALA ALA SEQRES 11 D 237 ALA ALA SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU SEQRES 12 D 237 ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP SEQRES 13 D 237 TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR SEQRES 14 D 237 ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SEQRES 15 D 237 SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA SEQRES 16 D 237 THR PHE TRP GLN ASN PRO UNK UNK UNK PHE ARG CYS GLN SEQRES 17 D 237 VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR SEQRES 18 D 237 GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA SEQRES 19 D 237 GLU ALA TRP HET PUB A 201 43 HET PUB A 202 43 HET PUB B 201 43 HET PUB B 202 43 HET PUB B 203 43 HETNAM PUB PHYCOUROBILIN FORMUL 5 PUB 5(C33 H42 N4 O6) FORMUL 10 HOH *18(H2 O) HELIX 1 AA1 SER A 3 ALA A 15 1 13 HELIX 2 AA2 SER A 20 ASN A 47 1 28 HELIX 3 AA3 ASN A 47 TYR A 63 1 17 HELIX 4 AA4 SER A 64 ASN A 68 5 5 HELIX 5 AA5 SER A 75 GLY A 100 1 26 HELIX 6 AA6 THR A 102 CYS A 109 1 8 HELIX 7 AA7 GLY A 112 ASN A 121 1 10 HELIX 8 AA8 PRO A 123 LEU A 138 1 16 HELIX 9 AA9 SER A 145 SER A 162 1 18 HELIX 10 AB1 ASP B 3 LYS B 15 1 13 HELIX 11 AB2 GLY B 20 ASP B 33 1 14 HELIX 12 AB3 ASP B 33 SER B 46 1 14 HELIX 13 AB4 ASN B 47 ASN B 63 1 17 HELIX 14 AB5 PRO B 64 ALA B 68 5 5 HELIX 15 AB6 THR B 75 GLY B 100 1 26 HELIX 16 AB7 SER B 102 CYS B 109 1 8 HELIX 17 AB8 GLY B 112 GLY B 121 1 10 HELIX 18 AB9 PRO B 123 ASN B 144 1 22 HELIX 19 AC1 CYS B 158 ILE B 176 1 19 HELIX 20 AC2 GLN C 78 SER C 82 5 5 HELIX 21 AC3 ALA C 181 ALA C 185 5 5 HELIX 22 AC4 GLU D 83 SER D 87 5 5 HELIX 23 AC5 ASP D 115 VAL D 119 5 5 HELIX 24 AC6 SER D 130 GLN D 138 1 9 HELIX 25 AC7 ALA D 197 ASN D 202 1 6 SHEET 1 AA1 5 VAL C 4 SER C 7 0 SHEET 2 AA1 5 SER C 19 PHE C 25 -1 O ASN C 24 N GLU C 5 SHEET 3 AA1 5 TYR C 69 ILE C 74 -1 O ILE C 74 N SER C 19 SHEET 4 AA1 5 LEU C 59 ASP C 64 -1 N LYS C 60 O HIS C 73 SHEET 5 AA1 5 THR C 53 ASN C 56 -1 N LYS C 54 O SER C 61 SHEET 1 AA2 5 ALA C 10 HIS C 14 0 SHEET 2 AA2 5 THR C 103 SER C 108 1 O ARG C 104 N LEU C 11 SHEET 3 AA2 5 GLY C 83 ALA C 89 -1 N GLY C 83 O LEU C 105 SHEET 4 AA2 5 VAL C 32 GLN C 37 -1 N GLN C 37 O THR C 84 SHEET 5 AA2 5 LEU C 43 LEU C 49 -1 O LEU C 46 N TRP C 34 SHEET 1 AA3 4 ALA C 10 HIS C 14 0 SHEET 2 AA3 4 THR C 103 SER C 108 1 O ARG C 104 N LEU C 11 SHEET 3 AA3 4 GLY C 83 ALA C 89 -1 N GLY C 83 O LEU C 105 SHEET 4 AA3 4 THR C 98 PHE C 99 -1 O THR C 98 N ALA C 89 SHEET 1 AA4 5 ARG C 122 ASP C 123 0 SHEET 2 AA4 5 GLU D 123 GLU D 128 -1 O GLU D 128 N ARG C 122 SHEET 3 AA4 5 LYS D 139 PHE D 149 -1 O VAL D 143 N PHE D 127 SHEET 4 AA4 5 TYR D 187 SER D 196 -1 O VAL D 195 N ALA D 140 SHEET 5 AA4 5 VAL D 169 THR D 171 -1 N CYS D 170 O ARG D 192 SHEET 1 AA5 5 ARG C 122 ASP C 123 0 SHEET 2 AA5 5 GLU D 123 GLU D 128 -1 O GLU D 128 N ARG C 122 SHEET 3 AA5 5 LYS D 139 PHE D 149 -1 O VAL D 143 N PHE D 127 SHEET 4 AA5 5 TYR D 187 SER D 196 -1 O VAL D 195 N ALA D 140 SHEET 5 AA5 5 LEU D 176 LYS D 177 -1 N LEU D 176 O ALA D 188 SHEET 1 AA6 3 LEU C 133 PHE C 137 0 SHEET 2 AA6 3 PHE C 166 TRP C 174 -1 O ALA C 171 N PHE C 134 SHEET 3 AA6 3 TYR C 152 ILE C 153 -1 N TYR C 152 O TRP C 174 SHEET 1 AA7 3 LEU C 133 PHE C 137 0 SHEET 2 AA7 3 PHE C 166 TRP C 174 -1 O ALA C 171 N PHE C 134 SHEET 3 AA7 3 CYS C 157 MET C 161 -1 N MET C 161 O PHE C 166 SHEET 1 AA8 4 VAL D 5 THR D 8 0 SHEET 2 AA8 4 VAL D 20 GLN D 26 -1 O ASN D 23 N THR D 8 SHEET 3 AA8 4 HIS D 74 ILE D 79 -1 O LEU D 75 N CYS D 24 SHEET 4 AA8 4 PHE D 65 GLN D 68 -1 N SER D 66 O ARG D 78 SHEET 1 AA9 6 TYR D 11 GLN D 15 0 SHEET 2 AA9 6 THR D 108 LEU D 113 1 O LEU D 113 N THR D 14 SHEET 3 AA9 6 ALA D 88 SER D 95 -1 N ALA D 88 O LEU D 110 SHEET 4 AA9 6 THR D 32 GLN D 38 -1 N GLN D 38 O VAL D 89 SHEET 5 AA9 6 LEU D 44 ASN D 51 -1 O MET D 47 N TRP D 35 SHEET 6 AA9 6 GLN D 54 ASN D 58 -1 O VAL D 57 N SER D 49 SHEET 1 AB1 4 TYR D 11 GLN D 15 0 SHEET 2 AB1 4 THR D 108 LEU D 113 1 O LEU D 113 N THR D 14 SHEET 3 AB1 4 ALA D 88 SER D 95 -1 N ALA D 88 O LEU D 110 SHEET 4 AB1 4 TYR D 103 PHE D 104 -1 O TYR D 103 N SER D 94 SHEET 1 AB2 4 LYS D 163 GLU D 164 0 SHEET 2 AB2 4 VAL D 154 VAL D 160 -1 N VAL D 160 O LYS D 163 SHEET 3 AB2 4 ARG D 208 PHE D 213 -1 O ARG D 208 N TRP D 159 SHEET 4 AB2 4 GLN D 232 GLU D 237 -1 O VAL D 234 N VAL D 211 SSBOND 1 CYS C 23 CYS C 87 1555 1555 2.03 SSBOND 2 CYS C 132 CYS C 182 1555 1555 2.05 SSBOND 3 CYS C 157 CYS D 170 1555 1555 2.04 SSBOND 4 CYS D 24 CYS D 92 1555 1555 2.03 SSBOND 5 CYS D 144 CYS D 209 1555 1555 2.02 LINK SG CYS A 82 CAA PUB A 201 1555 1555 1.81 LINK SG CYS B 50 CAA PUB B 203 1555 1555 1.89 LINK SG CYS B 61 CAD PUB B 203 1555 1555 1.58 LINK SG CYS B 82 CAA PUB B 201 1555 1555 1.85 LINK SG CYS B 158 CBA PUB B 202 1555 1555 1.85 CISPEP 1 VAL A 140 PRO A 141 0 6.15 CISPEP 2 SER C 7 PRO C 8 0 -9.36 CISPEP 3 THR D 8 PRO D 9 0 -3.96 CISPEP 4 TYR D 150 PRO D 151 0 -8.71 CRYST1 221.790 221.790 139.340 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004509 0.002603 0.000000 0.00000 SCALE2 0.000000 0.005206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007177 0.00000