HEADER CELL ADHESION 01-SEP-23 8U1K TITLE CRYO-EM OF CAULOBACTER CRESCENTUS TAD PILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILA; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 3 ORGANISM_TAXID: 155892 KEYWDS TIGHT ADHESION PILUS, FLP FAMILY TYPE IVB PILIN, CELL ADHESION EXPDTA ELECTRON MICROSCOPY AUTHOR R.R.SONANI,J.C.SANCHEZ,J.K.BAUMGARDT,E.R.WRIGHT,E.H.EGELMAN REVDAT 1 06-DEC-23 8U1K 0 JRNL AUTH R.R.SONANI,J.C.SANCHEZ,J.K.BAUMGARDT,S.KUNDRA,E.R.WRIGHT, JRNL AUTH 2 L.CRAIG,E.H.EGELMAN JRNL TITL TAD AND TOXIN-COREGULATED PILUS STRUCTURES REVEAL UNEXPECTED JRNL TITL 2 DIVERSITY IN BACTERIAL TYPE IV PILI. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 68120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 38011558 JRNL DOI 10.1073/PNAS.2316668120 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 179116 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8U1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277117. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : TAD PILUS FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -9.55 -57.20 REMARK 500 THR B 26 -9.64 -57.21 REMARK 500 THR C 26 -9.64 -57.18 REMARK 500 THR D 26 -9.60 -57.22 REMARK 500 THR E 26 -9.59 -57.27 REMARK 500 THR F 26 -9.70 -57.21 REMARK 500 THR G 26 -9.61 -57.20 REMARK 500 THR H 26 -9.64 -57.17 REMARK 500 THR I 26 -9.59 -57.23 REMARK 500 THR J 26 -9.62 -57.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41815 RELATED DB: EMDB REMARK 900 CRYO-EM OF CAULOBACTER CRESCENTUS TAD PILUS DBREF 8U1K A 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K B 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K C 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K D 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K E 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K F 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K G 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K H 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K I 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 DBREF 8U1K J 1 45 UNP Q9L720 Q9L720_CAUVI 15 59 SEQRES 1 A 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 A 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 A 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 A 45 SER THR ALA ALA GLY THR SEQRES 1 B 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 B 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 B 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 B 45 SER THR ALA ALA GLY THR SEQRES 1 C 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 C 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 C 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 C 45 SER THR ALA ALA GLY THR SEQRES 1 D 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 D 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 D 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 D 45 SER THR ALA ALA GLY THR SEQRES 1 E 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 E 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 E 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 E 45 SER THR ALA ALA GLY THR SEQRES 1 F 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 F 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 F 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 F 45 SER THR ALA ALA GLY THR SEQRES 1 G 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 G 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 G 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 G 45 SER THR ALA ALA GLY THR SEQRES 1 H 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 H 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 H 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 H 45 SER THR ALA ALA GLY THR SEQRES 1 I 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 I 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 I 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 I 45 SER THR ALA ALA GLY THR SEQRES 1 J 45 ALA THR ALA ILE GLU TYR GLY LEU ILE VAL ALA LEU ILE SEQRES 2 J 45 ALA VAL VAL ILE VAL THR ALA VAL THR THR LEU GLY THR SEQRES 3 J 45 ASN LEU ARG THR ALA PHE THR LYS ALA GLY ALA ALA VAL SEQRES 4 J 45 SER THR ALA ALA GLY THR HELIX 1 AA1 ALA A 3 GLU A 5 5 3 HELIX 2 AA2 TYR A 6 ALA A 11 1 6 HELIX 3 AA3 ILE A 17 ALA A 42 1 26 HELIX 4 AA4 ALA B 3 GLU B 5 5 3 HELIX 5 AA5 TYR B 6 ALA B 11 1 6 HELIX 6 AA6 ILE B 17 ALA B 42 1 26 HELIX 7 AA7 ALA C 3 GLU C 5 5 3 HELIX 8 AA8 TYR C 6 ALA C 11 1 6 HELIX 9 AA9 ILE C 17 ALA C 42 1 26 HELIX 10 AB1 ALA D 3 GLU D 5 5 3 HELIX 11 AB2 TYR D 6 ALA D 11 1 6 HELIX 12 AB3 ILE D 17 ALA D 42 1 26 HELIX 13 AB4 ALA E 3 GLU E 5 5 3 HELIX 14 AB5 TYR E 6 ALA E 11 1 6 HELIX 15 AB6 ILE E 17 ALA E 42 1 26 HELIX 16 AB7 ALA F 3 GLU F 5 5 3 HELIX 17 AB8 TYR F 6 ALA F 11 1 6 HELIX 18 AB9 ILE F 17 ALA F 42 1 26 HELIX 19 AC1 ALA G 3 GLU G 5 5 3 HELIX 20 AC2 TYR G 6 ALA G 11 1 6 HELIX 21 AC3 ILE G 17 ALA G 42 1 26 HELIX 22 AC4 ALA H 3 GLU H 5 5 3 HELIX 23 AC5 TYR H 6 ALA H 11 1 6 HELIX 24 AC6 ILE H 17 ALA H 42 1 26 HELIX 25 AC7 ALA I 3 GLU I 5 5 3 HELIX 26 AC8 TYR I 6 ALA I 11 1 6 HELIX 27 AC9 ILE I 17 ALA I 42 1 26 HELIX 28 AD1 ALA J 3 GLU J 5 5 3 HELIX 29 AD2 TYR J 6 ALA J 11 1 6 HELIX 30 AD3 ILE J 17 ALA J 42 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000