HEADER TRANSFERASE 06-SEP-23 8U2O TITLE CRYSTAL STRUCTURE OF CDK-RELATED PROTEIN KINASE 6 (PK6) FROM TITLE 2 PLASMODIUM FALCIPARUM IN COMPLEX WITH INHIBITOR TCMDC-123995 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE 6; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF3D7_1337100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLFAA.01252.A.A13 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, PROTEIN KINASE 6, INHIBITOR TCMDC-123995, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 27-SEP-23 8U2O 0 JRNL AUTH S.LOVELL,L.LIU,E.L.WOODWARD,K.P.BATTAILE,A.DEROCHER JRNL TITL CRYSTAL STRUCTURE OF CDK-RELATED PROTEIN KINASE 6 (PK6) FROM JRNL TITL 2 PLASMODIUM FALCIPARUM IN COMPLEX WITH INHIBITOR TCMDC-123995 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_5057: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6500 - 5.0500 0.99 2758 153 0.2063 0.2496 REMARK 3 2 5.0500 - 4.0100 0.99 2722 131 0.1719 0.2254 REMARK 3 3 4.0100 - 3.5000 1.00 2658 149 0.2012 0.2793 REMARK 3 4 3.5000 - 3.1800 1.00 2697 129 0.2248 0.3209 REMARK 3 5 3.1800 - 2.9600 1.00 2676 137 0.2485 0.3167 REMARK 3 6 2.9600 - 2.7800 1.00 2648 146 0.2469 0.2976 REMARK 3 7 2.7800 - 2.6400 1.00 2692 120 0.2502 0.3424 REMARK 3 8 2.6400 - 2.5300 1.00 2632 146 0.2436 0.2761 REMARK 3 9 2.5300 - 2.4300 1.00 2670 138 0.2372 0.3035 REMARK 3 10 2.4300 - 2.3500 1.00 2652 150 0.2503 0.3453 REMARK 3 11 2.3500 - 2.2700 1.00 2640 140 0.2477 0.3322 REMARK 3 12 2.2700 - 2.2100 1.00 2615 150 0.2752 0.3233 REMARK 3 13 2.2100 - 2.1500 1.00 2678 136 0.2959 0.3525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4743 REMARK 3 ANGLE : 1.028 6404 REMARK 3 CHIRALITY : 0.055 717 REMARK 3 PLANARITY : 0.011 795 REMARK 3 DIHEDRAL : 13.399 1776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8412 4.3617 35.5737 REMARK 3 T TENSOR REMARK 3 T11: 0.4686 T22: 0.2863 REMARK 3 T33: 0.3476 T12: 0.0397 REMARK 3 T13: -0.0454 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.0271 L22: 1.1407 REMARK 3 L33: 1.8982 L12: 2.0889 REMARK 3 L13: 0.6950 L23: 0.0988 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.5205 S13: -0.4271 REMARK 3 S21: -0.0405 S22: 0.2515 S23: -0.1575 REMARK 3 S31: 0.1822 S32: 0.2132 S33: -0.2418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2705 1.4678 51.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.3852 T22: 0.2379 REMARK 3 T33: 0.3079 T12: -0.0099 REMARK 3 T13: -0.0440 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.0130 L22: 1.3584 REMARK 3 L33: 3.4403 L12: 0.0713 REMARK 3 L13: -0.3511 L23: -0.0476 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: -0.0545 S13: 0.0083 REMARK 3 S21: -0.1387 S22: 0.0514 S23: 0.1155 REMARK 3 S31: 0.1376 S32: 0.0810 S33: -0.0867 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5651 -3.0204 66.3887 REMARK 3 T TENSOR REMARK 3 T11: 0.4498 T22: 0.3402 REMARK 3 T33: 0.3209 T12: -0.0591 REMARK 3 T13: -0.0011 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 4.7739 L22: 2.5265 REMARK 3 L33: 4.7345 L12: -0.7448 REMARK 3 L13: 0.0468 L23: 0.2056 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: -0.3964 S13: -0.0958 REMARK 3 S21: 0.0877 S22: -0.0234 S23: 0.2170 REMARK 3 S31: 0.1889 S32: -0.3573 S33: -0.0785 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7504 -7.3219 10.1777 REMARK 3 T TENSOR REMARK 3 T11: 0.5982 T22: 0.4388 REMARK 3 T33: 0.3766 T12: 0.0416 REMARK 3 T13: 0.0279 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 8.9630 L22: 4.4271 REMARK 3 L33: 2.2496 L12: 1.4044 REMARK 3 L13: 0.3499 L23: 2.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: -0.0227 S13: -0.0428 REMARK 3 S21: 0.0557 S22: 0.8205 S23: -0.4271 REMARK 3 S31: -0.5030 S32: 0.1844 S33: -0.6847 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9467 -6.5617 15.5182 REMARK 3 T TENSOR REMARK 3 T11: 0.4564 T22: 0.2531 REMARK 3 T33: 0.3206 T12: -0.0125 REMARK 3 T13: -0.0159 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 2.5456 L22: 0.7183 REMARK 3 L33: 4.2777 L12: -0.0602 REMARK 3 L13: 0.5778 L23: 1.3156 REMARK 3 S TENSOR REMARK 3 S11: -0.1293 S12: 0.0348 S13: 0.0665 REMARK 3 S21: -0.0412 S22: 0.1034 S23: -0.0072 REMARK 3 S31: -0.2169 S32: 0.1505 S33: 0.0542 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8108 -0.1850 11.5612 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: 0.4699 REMARK 3 T33: 0.3110 T12: 0.0229 REMARK 3 T13: 0.0524 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.1113 L22: 3.0604 REMARK 3 L33: 3.1338 L12: -0.1397 REMARK 3 L13: 1.0133 L23: -0.0190 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: -0.2240 S13: 0.0785 REMARK 3 S21: 0.1266 S22: 0.0958 S23: 0.3341 REMARK 3 S31: -0.2639 S32: -0.5769 S33: -0.0151 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36603 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 46.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INDEX G5: 25% (W/V) PEG 3350, 0.1 M REMARK 280 TRIS PH 8.5, 0.2 M LITHIUM SULFATE MONOHYDRATE. REMARK 280 PLFAA.01252.A.A13.PW39218 AT 15.9 MG/ML. HIS TAG CLEAVED WITH 3C REMARK 280 PROTEASE. 2MM TCMDC-123995 ADDED PRIOR TO CRYSTALLIZATION. PLATE REMARK 280 EWC2 WELL E12. PUCK: PSL-1008, CRYO: 80% CRYSTALLANT + 20% REMARK 280 PEG200., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.24250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 3 REMARK 465 ILE A 41 REMARK 465 ASP A 83 REMARK 465 LYS A 84 REMARK 465 LEU A 85 REMARK 465 ALA A 86 REMARK 465 GLY A 87 REMARK 465 GLU A 88 REMARK 465 ASN A 89 REMARK 465 LEU A 90 REMARK 465 GLU A 91 REMARK 465 VAL A 299 REMARK 465 LYS A 300 REMARK 465 PHE A 301 REMARK 465 SER A 302 REMARK 465 TYR A 303 REMARK 465 ASN A 304 REMARK 465 PHE A 305 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 ASN B 42 REMARK 465 LEU B 43 REMARK 465 ASP B 83 REMARK 465 LYS B 84 REMARK 465 LEU B 85 REMARK 465 ALA B 86 REMARK 465 GLY B 87 REMARK 465 GLU B 88 REMARK 465 ASN B 89 REMARK 465 LEU B 90 REMARK 465 GLU B 91 REMARK 465 ASN B 92 REMARK 465 VAL B 241 REMARK 465 ASP B 242 REMARK 465 LYS B 243 REMARK 465 ASP B 295 REMARK 465 ILE B 296 REMARK 465 GLU B 297 REMARK 465 GLN B 298 REMARK 465 VAL B 299 REMARK 465 LYS B 300 REMARK 465 PHE B 301 REMARK 465 SER B 302 REMARK 465 TYR B 303 REMARK 465 ASN B 304 REMARK 465 PHE B 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASN A 42 CG OD1 ND2 REMARK 470 ASN A 47 CG OD1 ND2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 ASN A 114 CG OD1 ND2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 ASN A 222 CG OD1 ND2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ILE B 41 CG1 CG2 CD1 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 HIS B 113 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 114 CG OD1 ND2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 ASP B 236 CG OD1 OD2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 0 96.95 -40.84 REMARK 500 LEU A 43 -61.15 82.11 REMARK 500 ASP A 45 -159.23 -126.53 REMARK 500 ASP A 143 37.81 -145.44 REMARK 500 VAL A 241 95.97 -69.57 REMARK 500 PRO A 250 36.54 -96.96 REMARK 500 LEU A 274 46.90 -106.28 REMARK 500 ASP B 45 -159.93 -124.27 REMARK 500 ASP B 143 40.85 -145.22 REMARK 500 THR B 239 -86.73 -128.82 REMARK 500 PRO B 250 33.77 -98.88 REMARK 500 LEU B 274 47.16 -108.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 213 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8U2O A 1 305 UNP Q8IDW1 Q8IDW1_PLAF7 1 305 DBREF 8U2O B 1 305 UNP Q8IDW1 Q8IDW1_PLAF7 1 305 SEQADV 8U2O GLY A -1 UNP Q8IDW1 EXPRESSION TAG SEQADV 8U2O SER A 0 UNP Q8IDW1 EXPRESSION TAG SEQADV 8U2O ASN A 44 UNP Q8IDW1 CYS 44 ENGINEERED MUTATION SEQADV 8U2O ARG A 53 UNP Q8IDW1 CYS 53 ENGINEERED MUTATION SEQADV 8U2O ALA A 86 UNP Q8IDW1 LYS 86 ENGINEERED MUTATION SEQADV 8U2O ASN A 222 UNP Q8IDW1 CYS 222 ENGINEERED MUTATION SEQADV 8U2O ALA A 237 UNP Q8IDW1 LYS 237 ENGINEERED MUTATION SEQADV 8U2O GLY B -1 UNP Q8IDW1 EXPRESSION TAG SEQADV 8U2O SER B 0 UNP Q8IDW1 EXPRESSION TAG SEQADV 8U2O ASN B 44 UNP Q8IDW1 CYS 44 ENGINEERED MUTATION SEQADV 8U2O ARG B 53 UNP Q8IDW1 CYS 53 ENGINEERED MUTATION SEQADV 8U2O ALA B 86 UNP Q8IDW1 LYS 86 ENGINEERED MUTATION SEQADV 8U2O ASN B 222 UNP Q8IDW1 CYS 222 ENGINEERED MUTATION SEQADV 8U2O ALA B 237 UNP Q8IDW1 LYS 237 ENGINEERED MUTATION SEQRES 1 A 307 GLY SER MET ASN ARG ILE ASP ILE SER ASN PHE ASP PHE SEQRES 2 A 307 LEU TYR VAL ILE GLY LYS GLY THR TYR GLY ILE VAL TYR SEQRES 3 A 307 LYS ALA LEU ASP LYS LYS GLU ASN ASN PHE VAL ALA ILE SEQRES 4 A 307 LYS LYS ILE ILE ASN LEU ASN ASP GLU ASN TYR GLY ILE SEQRES 5 A 307 SER LYS ARG ILE LEU ARG GLU LEU THR ILE LEU GLN LYS SEQRES 6 A 307 ILE LYS HIS LYS ASN ILE ILE ASN LEU LYS TYR VAL PHE SEQRES 7 A 307 TYR GLY LYS ASP ILE GLU ASP LYS LEU ALA GLY GLU ASN SEQRES 8 A 307 LEU GLU ASN SER CYS LEU TYR LEU ALA PHE GLU TYR CYS SEQRES 9 A 307 ASP ILE ASP LEU PHE ASN LEU ILE LYS LYS HIS ASN LEU SEQRES 10 A 307 ASN ILE LYS GLU ILE LYS TYR ILE ILE PHE GLU LEU LEU SEQRES 11 A 307 LEU ALA LEU SER TYR PHE HIS SER ASN ASN TYR ILE HIS SEQRES 12 A 307 ARG ASP ILE LYS PRO GLU ASN ILE PHE ILE THR SER GLU SEQRES 13 A 307 GLY GLU ILE LYS LEU GLY ASP LEU GLY MET SER VAL GLU SEQRES 14 A 307 LYS SER ASP HIS MET THR PRO THR VAL VAL THR LEU TRP SEQRES 15 A 307 TYR ARG ALA PRO GLU ILE LEU LEU LYS SER THR ASN TYR SEQRES 16 A 307 ASP GLN LYS VAL ASP ILE TRP SER LEU GLY CYS LEU PHE SEQRES 17 A 307 MET GLU LEU ILE GLN GLY ARG PRO LEU PHE PRO GLY LYS SEQRES 18 A 307 ASN ASP ASN THR GLN LEU GLU LEU ILE TYR LEU LEU LEU SEQRES 19 A 307 GLY ASP LYS ASP ALA LEU THR THR VAL ASP LYS GLU ARG SEQRES 20 A 307 LYS ASP MET PHE PRO TYR PHE GLU ILE ASN MET LEU LYS SEQRES 21 A 307 ASP ALA ILE ASP ASP GLU HIS THR LEU ASP LEU ILE SER SEQRES 22 A 307 LYS MET LEU ILE TYR ASP PRO ASN TYR ARG ILE SER SER SEQRES 23 A 307 LYS GLU ALA LEU LYS HIS PRO CYS PHE GLN ASP ILE GLU SEQRES 24 A 307 GLN VAL LYS PHE SER TYR ASN PHE SEQRES 1 B 307 GLY SER MET ASN ARG ILE ASP ILE SER ASN PHE ASP PHE SEQRES 2 B 307 LEU TYR VAL ILE GLY LYS GLY THR TYR GLY ILE VAL TYR SEQRES 3 B 307 LYS ALA LEU ASP LYS LYS GLU ASN ASN PHE VAL ALA ILE SEQRES 4 B 307 LYS LYS ILE ILE ASN LEU ASN ASP GLU ASN TYR GLY ILE SEQRES 5 B 307 SER LYS ARG ILE LEU ARG GLU LEU THR ILE LEU GLN LYS SEQRES 6 B 307 ILE LYS HIS LYS ASN ILE ILE ASN LEU LYS TYR VAL PHE SEQRES 7 B 307 TYR GLY LYS ASP ILE GLU ASP LYS LEU ALA GLY GLU ASN SEQRES 8 B 307 LEU GLU ASN SER CYS LEU TYR LEU ALA PHE GLU TYR CYS SEQRES 9 B 307 ASP ILE ASP LEU PHE ASN LEU ILE LYS LYS HIS ASN LEU SEQRES 10 B 307 ASN ILE LYS GLU ILE LYS TYR ILE ILE PHE GLU LEU LEU SEQRES 11 B 307 LEU ALA LEU SER TYR PHE HIS SER ASN ASN TYR ILE HIS SEQRES 12 B 307 ARG ASP ILE LYS PRO GLU ASN ILE PHE ILE THR SER GLU SEQRES 13 B 307 GLY GLU ILE LYS LEU GLY ASP LEU GLY MET SER VAL GLU SEQRES 14 B 307 LYS SER ASP HIS MET THR PRO THR VAL VAL THR LEU TRP SEQRES 15 B 307 TYR ARG ALA PRO GLU ILE LEU LEU LYS SER THR ASN TYR SEQRES 16 B 307 ASP GLN LYS VAL ASP ILE TRP SER LEU GLY CYS LEU PHE SEQRES 17 B 307 MET GLU LEU ILE GLN GLY ARG PRO LEU PHE PRO GLY LYS SEQRES 18 B 307 ASN ASP ASN THR GLN LEU GLU LEU ILE TYR LEU LEU LEU SEQRES 19 B 307 GLY ASP LYS ASP ALA LEU THR THR VAL ASP LYS GLU ARG SEQRES 20 B 307 LYS ASP MET PHE PRO TYR PHE GLU ILE ASN MET LEU LYS SEQRES 21 B 307 ASP ALA ILE ASP ASP GLU HIS THR LEU ASP LEU ILE SER SEQRES 22 B 307 LYS MET LEU ILE TYR ASP PRO ASN TYR ARG ILE SER SER SEQRES 23 B 307 LYS GLU ALA LEU LYS HIS PRO CYS PHE GLN ASP ILE GLU SEQRES 24 B 307 GLN VAL LYS PHE SER TYR ASN PHE HET SO4 A 401 5 HET CL A 402 1 HET CL A 403 1 HET GOL A 404 6 HET V3O A 405 23 HET SO4 B 401 5 HET CL B 402 1 HET CL B 403 1 HET GOL B 404 6 HET V3O B 405 23 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM V3O N-[(4P)-2-(4-CHLOROANILINO)-4'-METHYL[4,5'-BI-1,3- HETNAM 2 V3O THIAZOL]-2'-YL]ACETAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 CL 4(CL 1-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 V3O 2(C15 H13 CL N4 O S2) FORMUL 13 HOH *132(H2 O) HELIX 1 AA1 ASP A 5 SER A 7 5 3 HELIX 2 AA2 SER A 51 ILE A 64 1 14 HELIX 3 AA3 LEU A 106 HIS A 113 1 8 HELIX 4 AA4 ASN A 116 ASN A 137 1 22 HELIX 5 AA5 LYS A 145 GLU A 147 5 3 HELIX 6 AA6 THR A 178 ARG A 182 5 5 HELIX 7 AA7 ALA A 183 LEU A 188 1 6 HELIX 8 AA8 GLN A 195 GLY A 212 1 18 HELIX 9 AA9 ASN A 220 GLY A 233 1 14 HELIX 10 AB1 ASP A 234 LEU A 238 5 5 HELIX 11 AB2 ASP A 242 MET A 248 1 7 HELIX 12 AB3 MET A 256 ILE A 261 1 6 HELIX 13 AB4 ASP A 263 LEU A 274 1 12 HELIX 14 AB5 ASP A 277 ARG A 281 5 5 HELIX 15 AB6 SER A 283 LYS A 289 1 7 HELIX 16 AB7 HIS A 290 GLN A 294 5 5 HELIX 17 AB8 ASP B 5 SER B 7 5 3 HELIX 18 AB9 SER B 51 ILE B 64 1 14 HELIX 19 AC1 LEU B 106 HIS B 113 1 8 HELIX 20 AC2 ASN B 116 ASN B 137 1 22 HELIX 21 AC3 LYS B 145 GLU B 147 5 3 HELIX 22 AC4 THR B 178 ARG B 182 5 5 HELIX 23 AC5 ALA B 183 LEU B 188 1 6 HELIX 24 AC6 GLN B 195 GLY B 212 1 18 HELIX 25 AC7 ASN B 220 GLY B 233 1 14 HELIX 26 AC8 ASP B 234 LEU B 238 5 5 HELIX 27 AC9 MET B 256 ILE B 261 1 6 HELIX 28 AD1 ASP B 263 LEU B 274 1 12 HELIX 29 AD2 SER B 283 LYS B 289 1 7 HELIX 30 AD3 HIS B 290 GLN B 294 5 5 SHEET 1 AA1 5 PHE A 9 LYS A 17 0 SHEET 2 AA1 5 ILE A 22 ASP A 28 -1 O VAL A 23 N GLY A 16 SHEET 3 AA1 5 ASN A 33 LYS A 39 -1 O LYS A 39 N ILE A 22 SHEET 4 AA1 5 SER A 93 GLU A 100 -1 O LEU A 97 N LYS A 38 SHEET 5 AA1 5 LEU A 72 LYS A 79 -1 N GLY A 78 O CYS A 94 SHEET 1 AA2 3 ILE A 104 ASP A 105 0 SHEET 2 AA2 3 ILE A 149 ILE A 151 -1 O ILE A 151 N ILE A 104 SHEET 3 AA2 3 ILE A 157 LEU A 159 -1 O LYS A 158 N PHE A 150 SHEET 1 AA3 2 TYR A 139 ILE A 140 0 SHEET 2 AA3 2 VAL A 166 GLU A 167 -1 O VAL A 166 N ILE A 140 SHEET 1 AA4 5 PHE B 9 LYS B 17 0 SHEET 2 AA4 5 GLY B 21 ASP B 28 -1 O VAL B 23 N GLY B 16 SHEET 3 AA4 5 ASN B 33 ILE B 40 -1 O LYS B 39 N ILE B 22 SHEET 4 AA4 5 CYS B 94 GLU B 100 -1 O LEU B 97 N LYS B 38 SHEET 5 AA4 5 LEU B 72 GLY B 78 -1 N GLY B 78 O CYS B 94 SHEET 1 AA5 3 ILE B 104 ASP B 105 0 SHEET 2 AA5 3 ILE B 149 ILE B 151 -1 O ILE B 151 N ILE B 104 SHEET 3 AA5 3 ILE B 157 LEU B 159 -1 O LYS B 158 N PHE B 150 SHEET 1 AA6 2 TYR B 139 ILE B 140 0 SHEET 2 AA6 2 VAL B 166 GLU B 167 -1 O VAL B 166 N ILE B 140 CISPEP 1 PHE A 249 PRO A 250 0 1.90 CISPEP 2 PHE B 249 PRO B 250 0 2.73 CRYST1 65.977 46.485 111.278 90.00 100.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015157 0.000000 0.002710 0.00000 SCALE2 0.000000 0.021512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009129 0.00000