HEADER OXIDOREDUCTASE 12-SEP-23 8U5I TITLE CRYSTAL STRUCTURE OF HUMAN IDO1 BOUND TO COMPOUND 23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDOLEAMINE 2,3-DIOXYGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL TRUNCATED; COMPND 5 SYNONYM: IDO-1,INDOLEAMINE-PYRROLE 2,3-DIOXYGENASE; COMPND 6 EC: 1.13.11.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDO1, IDO, INDO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IDO, TDO, COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.STEINBACHER,A.LAMMENS,S.F.HARRIS REVDAT 1 27-NOV-24 8U5I 0 JRNL AUTH R.PASTOR,S.F.HARRIS JRNL TITL EXPLOITING STEREO-COMPLEXITY TO IDENTIFY SPIROCYCLIC JRNL TITL 2 IMIDAZOISOINDOLES AS POTENT AND ORALLY BIOAVAILABLE DUAL JRNL TITL 3 INHIBITORS OF INDOLEAMINE-2,3-DIOXYGENASE AND JRNL TITL 4 TRYPTOPHAN-2,3-DIOXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 51992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 142 REMARK 3 SOLVENT ATOMS : 478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6364 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5755 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8706 ; 1.212 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13361 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 791 ; 5.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;34.034 ;24.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1044 ;12.463 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;15.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 940 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7146 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1275 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1403 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5753 ; 0.141 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3103 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3198 ; 0.076 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 429 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5043 ; 1.621 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1559 ; 0.355 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6264 ; 1.984 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2939 ; 3.128 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2438 ; 4.164 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 0.490 -0.542 -18.819 REMARK 3 T TENSOR REMARK 3 T11: -0.1202 T22: 0.0372 REMARK 3 T33: 0.0066 T12: -0.0203 REMARK 3 T13: -0.0394 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 3.5338 L22: 3.0714 REMARK 3 L33: 4.2486 L12: 1.2484 REMARK 3 L13: -1.3593 L23: -1.4416 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.3532 S13: -0.3028 REMARK 3 S21: 0.0750 S22: -0.2206 S23: -0.5275 REMARK 3 S31: 0.0676 S32: 0.6912 S33: 0.2044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -18.660 -0.485 -12.825 REMARK 3 T TENSOR REMARK 3 T11: -0.0815 T22: -0.0887 REMARK 3 T33: -0.1056 T12: -0.0284 REMARK 3 T13: -0.0115 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.7120 L22: 1.4236 REMARK 3 L33: 1.6139 L12: 0.2867 REMARK 3 L13: -0.9255 L23: -0.2368 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.2559 S13: -0.0608 REMARK 3 S21: 0.1948 S22: -0.0627 S23: 0.0899 REMARK 3 S31: 0.0335 S32: 0.1206 S33: 0.0771 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): -30.048 7.477 -20.288 REMARK 3 T TENSOR REMARK 3 T11: -0.1278 T22: -0.1569 REMARK 3 T33: -0.0778 T12: 0.0293 REMARK 3 T13: -0.0223 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 4.9399 L22: 6.5890 REMARK 3 L33: 5.0490 L12: 2.7221 REMARK 3 L13: -0.5437 L23: -3.2116 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0887 S13: 0.2248 REMARK 3 S21: 0.0637 S22: 0.0416 S23: 0.4045 REMARK 3 S31: 0.0646 S32: -0.2445 S33: -0.0739 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): -46.526 -22.891 -27.567 REMARK 3 T TENSOR REMARK 3 T11: -0.1347 T22: -0.1623 REMARK 3 T33: -0.0175 T12: -0.0021 REMARK 3 T13: 0.0203 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 4.1696 L22: 2.4189 REMARK 3 L33: 2.1523 L12: -0.3882 REMARK 3 L13: 1.3295 L23: -0.0764 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.3211 S13: 0.1666 REMARK 3 S21: -0.0120 S22: -0.0081 S23: 0.2425 REMARK 3 S31: -0.0540 S32: -0.1913 S33: 0.0866 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 335 REMARK 3 ORIGIN FOR THE GROUP (A): -27.525 -28.251 -24.020 REMARK 3 T TENSOR REMARK 3 T11: -0.0897 T22: -0.1342 REMARK 3 T33: -0.1097 T12: -0.0005 REMARK 3 T13: 0.0253 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.3114 L22: 1.3019 REMARK 3 L33: 1.1047 L12: -0.8889 REMARK 3 L13: 1.0015 L23: -0.1309 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: -0.1042 S13: 0.0793 REMARK 3 S21: 0.0848 S22: -0.0188 S23: -0.0563 REMARK 3 S31: 0.0539 S32: 0.0665 S33: 0.0757 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 336 B 403 REMARK 3 ORIGIN FOR THE GROUP (A): -16.928 -31.000 -35.560 REMARK 3 T TENSOR REMARK 3 T11: -0.1003 T22: -0.0456 REMARK 3 T33: -0.0962 T12: 0.0296 REMARK 3 T13: 0.0837 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 4.7185 L22: 2.9007 REMARK 3 L33: 6.8055 L12: 0.2630 REMARK 3 L13: 3.0093 L23: 0.7202 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: 0.6028 S13: -0.0056 REMARK 3 S21: -0.2665 S22: -0.1282 S23: -0.2336 REMARK 3 S31: -0.0277 S32: 0.4989 S33: 0.0863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8U5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 45.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 6K, 0.10M TRIS/HCL REMARK 280 PH=8.0, PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.43100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.94400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.43100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.94400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 363 REMARK 465 GLU A 364 REMARK 465 ASN A 365 REMARK 465 LYS A 366 REMARK 465 THR A 367 REMARK 465 SER A 368 REMARK 465 GLU A 369 REMARK 465 ASP A 370 REMARK 465 PRO A 371 REMARK 465 SER A 372 REMARK 465 LYS A 373 REMARK 465 LEU A 374 REMARK 465 GLU A 375 REMARK 465 ALA A 376 REMARK 465 LYS A 377 REMARK 465 GLY A 378 REMARK 465 THR A 379 REMARK 465 GLU A 402 REMARK 465 GLY A 403 REMARK 465 MET B 10 REMARK 465 LYS B 363 REMARK 465 GLU B 364 REMARK 465 ASN B 365 REMARK 465 LYS B 366 REMARK 465 THR B 367 REMARK 465 SER B 368 REMARK 465 GLU B 369 REMARK 465 ASP B 370 REMARK 465 PRO B 371 REMARK 465 SER B 372 REMARK 465 LYS B 373 REMARK 465 LEU B 374 REMARK 465 GLU B 375 REMARK 465 ALA B 376 REMARK 465 LYS B 377 REMARK 465 GLY B 378 REMARK 465 THR B 379 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 10 SD CE REMARK 480 LYS A 13 CG CD CE NZ REMARK 480 GLU A 14 CG CD OE1 OE2 REMARK 480 GLU A 19 CG CD OE1 OE2 REMARK 480 LYS A 44 CE NZ REMARK 480 LYS A 101 CE NZ REMARK 480 LYS A 116 NZ REMARK 480 LYS A 117 NZ REMARK 480 LYS A 141 CE NZ REMARK 480 GLU A 146 CG CD OE1 OE2 REMARK 480 ILE A 178 CD1 REMARK 480 LYS A 186 CD CE NZ REMARK 480 GLN A 189 CG CD OE1 NE2 REMARK 480 MET A 190 CE REMARK 480 LYS A 198 CE NZ REMARK 480 LYS A 209 CD CE NZ REMARK 480 LYS A 224 CE NZ REMARK 480 GLU A 254 CD OE1 OE2 REMARK 480 GLU A 318 CD OE1 OE2 REMARK 480 LYS A 323 NZ REMARK 480 LYS A 337 NZ REMARK 480 GLU A 396 CD OE1 OE2 REMARK 480 LYS A 397 NZ REMARK 480 LYS A 401 NZ REMARK 480 SER B 12 OG REMARK 480 LYS B 13 CE NZ REMARK 480 GLU B 14 CG CD OE1 OE2 REMARK 480 LYS B 44 CD CE NZ REMARK 480 LYS B 101 CE NZ REMARK 480 LYS B 116 CE NZ REMARK 480 LYS B 141 NZ REMARK 480 ILE B 178 CD1 REMARK 480 LYS B 186 CE NZ REMARK 480 GLN B 189 CD OE1 NE2 REMARK 480 LYS B 198 NZ REMARK 480 LYS B 224 CE NZ REMARK 480 LYS B 337 CD CE NZ REMARK 480 LYS B 401 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 68.84 33.77 REMARK 500 VAL A 130 -60.13 -108.33 REMARK 500 ASN A 133 54.41 -109.18 REMARK 500 VAL A 229 -68.37 -120.55 REMARK 500 ILE A 354 -58.18 -123.82 REMARK 500 ASN B 27 68.71 38.41 REMARK 500 ASN B 27 68.24 39.49 REMARK 500 ASN B 133 54.19 -103.09 REMARK 500 VAL B 229 -66.70 -122.47 REMARK 500 ILE B 354 -59.98 -121.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 297 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 346 NE2 REMARK 620 2 HEM A 501 NA 86.4 REMARK 620 3 HEM A 501 NB 96.0 91.4 REMARK 620 4 HEM A 501 NC 91.5 177.2 90.7 REMARK 620 5 HEM A 501 ND 82.5 88.0 178.4 89.8 REMARK 620 6 W2Z A 502 N28 174.1 89.6 88.4 92.3 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 346 NE2 REMARK 620 2 HEM B 501 NA 85.0 REMARK 620 3 HEM B 501 NB 93.6 88.2 REMARK 620 4 HEM B 501 NC 93.3 178.2 91.2 REMARK 620 5 HEM B 501 ND 85.3 91.3 178.8 89.3 REMARK 620 6 W2Z B 502 N28 173.8 89.0 87.9 92.7 93.2 REMARK 620 N 1 2 3 4 5 DBREF 8U5I A 11 403 UNP P14902 I23O1_HUMAN 11 403 DBREF 8U5I B 11 403 UNP P14902 I23O1_HUMAN 11 403 SEQADV 8U5I MET A 10 UNP P14902 INITIATING METHIONINE SEQADV 8U5I MET B 10 UNP P14902 INITIATING METHIONINE SEQRES 1 A 394 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY SEQRES 2 A 394 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE SEQRES 3 A 394 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP SEQRES 4 A 394 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS SEQRES 5 A 394 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS SEQRES 6 A 394 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR SEQRES 7 A 394 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG SEQRES 8 A 394 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN SEQRES 9 A 394 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR SEQRES 10 A 394 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO SEQRES 11 A 394 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE SEQRES 12 A 394 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU SEQRES 13 A 394 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE SEQRES 14 A 394 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN SEQRES 15 A 394 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA SEQRES 16 A 394 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE SEQRES 17 A 394 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU SEQRES 18 A 394 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU SEQRES 19 A 394 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO SEQRES 20 A 394 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL SEQRES 21 A 394 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR SEQRES 22 A 394 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET SEQRES 23 A 394 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS SEQRES 24 A 394 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU SEQRES 25 A 394 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA SEQRES 26 A 394 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU SEQRES 27 A 394 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN SEQRES 28 A 394 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS SEQRES 29 A 394 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN SEQRES 30 A 394 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU SEQRES 31 A 394 LEU LYS GLU GLY SEQRES 1 B 394 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY SEQRES 2 B 394 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE SEQRES 3 B 394 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP SEQRES 4 B 394 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS SEQRES 5 B 394 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS SEQRES 6 B 394 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR SEQRES 7 B 394 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG SEQRES 8 B 394 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN SEQRES 9 B 394 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR SEQRES 10 B 394 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO SEQRES 11 B 394 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE SEQRES 12 B 394 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU SEQRES 13 B 394 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE SEQRES 14 B 394 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN SEQRES 15 B 394 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA SEQRES 16 B 394 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE SEQRES 17 B 394 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU SEQRES 18 B 394 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU SEQRES 19 B 394 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO SEQRES 20 B 394 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL SEQRES 21 B 394 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR SEQRES 22 B 394 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET SEQRES 23 B 394 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS SEQRES 24 B 394 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU SEQRES 25 B 394 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA SEQRES 26 B 394 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU SEQRES 27 B 394 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN SEQRES 28 B 394 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS SEQRES 29 B 394 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN SEQRES 30 B 394 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU SEQRES 31 B 394 LEU LYS GLU GLY HET HEM A 501 43 HET W2Z A 502 28 HET HEM B 501 43 HET W2Z B 502 28 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM W2Z (1R,2S)-8-(ETHANESULFONYL)-2-[(4R,5S,9AM)-5H-IMIDAZO[5, HETNAM 2 W2Z 1-A]ISOINDOL-5-YL]-8-AZASPIRO[4.5]DECAN-1-OL HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 W2Z 2(C21 H27 N3 O3 S) FORMUL 7 HOH *478(H2 O) HELIX 1 AA1 SER A 12 HIS A 16 5 5 HELIX 2 AA2 PRO A 33 PHE A 35 5 3 HELIX 3 AA3 TYR A 36 HIS A 45 1 10 HELIX 4 AA4 HIS A 45 SER A 52 1 8 HELIX 5 AA5 GLN A 54 LYS A 61 1 8 HELIX 6 AA6 ASP A 72 GLY A 93 1 22 HELIX 7 AA7 PRO A 104 GLU A 119 1 16 HELIX 8 AA8 VAL A 125 VAL A 130 1 6 HELIX 9 AA9 THR A 144 GLU A 146 5 3 HELIX 10 AB1 CYS A 159 SER A 176 1 18 HELIX 11 AB2 ALA A 177 LYS A 179 5 3 HELIX 12 AB3 VAL A 180 MET A 190 1 11 HELIX 13 AB4 GLU A 192 HIS A 215 1 24 HELIX 14 AB5 GLN A 216 VAL A 221 1 6 HELIX 15 AB6 ASN A 222 VAL A 229 1 8 HELIX 16 AB7 VAL A 229 SER A 235 1 7 HELIX 17 AB8 ASN A 240 SER A 244 5 5 HELIX 18 AB9 SER A 263 GLN A 266 5 4 HELIX 19 AC1 SER A 267 LEU A 277 1 11 HELIX 20 AC2 GLY A 286 ARG A 296 1 11 HELIX 21 AC3 ARG A 297 MET A 299 5 3 HELIX 22 AC4 PRO A 300 ASN A 313 1 14 HELIX 23 AC5 SER A 315 GLY A 324 1 10 HELIX 24 AC6 ASP A 325 ILE A 354 1 30 HELIX 25 AC7 ILE A 354 GLN A 361 1 8 HELIX 26 AC8 GLY A 381 LYS A 397 1 17 HELIX 27 AC9 SER B 12 HIS B 16 5 5 HELIX 28 AD1 PRO B 33 PHE B 35 5 3 HELIX 29 AD2 TYR B 36 HIS B 45 1 10 HELIX 30 AD3 HIS B 45 SER B 52 1 8 HELIX 31 AD4 GLN B 54 LEU B 62 1 9 HELIX 32 AD5 ASP B 72 GLY B 93 1 22 HELIX 33 AD6 PRO B 104 LEU B 118 1 15 HELIX 34 AD7 VAL B 125 VAL B 130 1 6 HELIX 35 AD8 THR B 144 GLU B 146 5 3 HELIX 36 AD9 CYS B 159 SER B 176 1 18 HELIX 37 AE1 ALA B 177 LYS B 179 5 3 HELIX 38 AE2 VAL B 180 MET B 190 1 11 HELIX 39 AE3 GLU B 192 HIS B 215 1 24 HELIX 40 AE4 GLN B 216 VAL B 221 1 6 HELIX 41 AE5 ASN B 222 VAL B 229 1 8 HELIX 42 AE6 VAL B 229 SER B 235 1 7 HELIX 43 AE7 ASN B 240 SER B 244 5 5 HELIX 44 AE8 SER B 263 GLN B 266 5 4 HELIX 45 AE9 SER B 267 LEU B 277 1 11 HELIX 46 AF1 GLY B 286 ARG B 296 1 11 HELIX 47 AF2 ARG B 297 MET B 299 5 3 HELIX 48 AF3 PRO B 300 SER B 312 1 13 HELIX 49 AF4 SER B 315 SER B 322 1 8 HELIX 50 AF5 ASP B 325 ILE B 354 1 30 HELIX 51 AF6 ILE B 354 GLN B 360 1 7 HELIX 52 AF7 GLY B 381 LYS B 397 1 17 SHEET 1 AA1 2 VAL A 102 LEU A 103 0 SHEET 2 AA1 2 VAL A 248 TYR A 249 1 O VAL A 248 N LEU A 103 SHEET 1 AA2 2 LYS A 135 LYS A 136 0 SHEET 2 AA2 2 MET A 148 ASP A 149 -1 O ASP A 149 N LYS A 135 SHEET 1 AA3 2 VAL B 102 LEU B 103 0 SHEET 2 AA3 2 VAL B 248 TYR B 249 1 O VAL B 248 N LEU B 103 SHEET 1 AA4 2 LYS B 135 LYS B 136 0 SHEET 2 AA4 2 MET B 148 ASP B 149 -1 O ASP B 149 N LYS B 135 SSBOND 1 CYS A 308 CYS B 308 1555 1555 2.04 LINK NE2 HIS A 346 FE HEM A 501 1555 1555 2.10 LINK FE HEM A 501 N28 W2Z A 502 1555 1555 2.09 LINK NE2 HIS B 346 FE HEM B 501 1555 1555 2.11 LINK FE HEM B 501 N28 W2Z B 502 1555 1555 2.12 CRYST1 84.862 89.888 133.520 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007490 0.00000