data_8U5J # _entry.id 8U5J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8U5J pdb_00008u5j 10.2210/pdb8u5j/pdb WWPDB D_1000277386 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8U5J _pdbx_database_status.recvd_initial_deposition_date 2023-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email adrian.ferre@nih.gov _pdbx_contact_author.name_first Adrian _pdbx_contact_author.name_last "Ferre-D'Amare" _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4549-1619 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Passalacqua, L.F.M.' 1 0000-0002-5490-2427 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of Mango III variant aptamer bound to T01-07M-B' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Passalacqua, L.F.M.' 1 0000-0002-5490-2427 primary ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Mango III variant' 11688.938 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 2 ? ? ? ? 4 non-polymer syn ;2-[(E)-(1,7-dimethylquinolin-4(1H)-ylidene)methyl]-3-{2,16-dioxo-20-[(3aR,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium ; 763.989 1 ? ? ? ? 5 water nat water 18.015 116 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GUACGAAGGAAGGUUUGGUAUGUGGUAGAUUCGUAC _entity_poly.pdbx_seq_one_letter_code_can GUACGAAGGAAGGUUUGGUAUGUGGUAGAUUCGUAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'DIMETHYL SULFOXIDE' DMS 4 ;2-[(E)-(1,7-dimethylquinolin-4(1H)-ylidene)methyl]-3-{2,16-dioxo-20-[(3aR,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium ; W6F 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 A n 1 4 C n 1 5 G n 1 6 A n 1 7 A n 1 8 G n 1 9 G n 1 10 A n 1 11 A n 1 12 G n 1 13 G n 1 14 U n 1 15 U n 1 16 U n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 U n 1 22 G n 1 23 U n 1 24 G n 1 25 G n 1 26 U n 1 27 A n 1 28 G n 1 29 A n 1 30 U n 1 31 U n 1 32 C n 1 33 G n 1 34 U n 1 35 A n 1 36 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 36 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 W6F non-polymer . ;2-[(E)-(1,7-dimethylquinolin-4(1H)-ylidene)methyl]-3-{2,16-dioxo-20-[(3aR,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium ; ? 'C39 H51 N6 O6 S2 1' 763.989 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 A 20 20 20 A A A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 U 26 26 26 U U A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 U 30 30 30 U U A . n A 1 31 U 31 31 31 U U A . n A 1 32 C 32 32 32 C C A . n A 1 33 G 33 33 33 G G A . n A 1 34 U 34 34 34 U U A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 3 DMS 1 102 1 DMS DMS A . D 3 DMS 1 103 2 DMS DMS A . E 4 W6F 1 104 1 W6F 139 A . F 5 HOH 1 201 93 HOH HOH A . F 5 HOH 2 202 110 HOH HOH A . F 5 HOH 3 203 7 HOH HOH A . F 5 HOH 4 204 104 HOH HOH A . F 5 HOH 5 205 4 HOH HOH A . F 5 HOH 6 206 76 HOH HOH A . F 5 HOH 7 207 49 HOH HOH A . F 5 HOH 8 208 98 HOH HOH A . F 5 HOH 9 209 39 HOH HOH A . F 5 HOH 10 210 116 HOH HOH A . F 5 HOH 11 211 29 HOH HOH A . F 5 HOH 12 212 102 HOH HOH A . F 5 HOH 13 213 113 HOH HOH A . F 5 HOH 14 214 34 HOH HOH A . F 5 HOH 15 215 105 HOH HOH A . F 5 HOH 16 216 46 HOH HOH A . F 5 HOH 17 217 68 HOH HOH A . F 5 HOH 18 218 12 HOH HOH A . F 5 HOH 19 219 8 HOH HOH A . F 5 HOH 20 220 112 HOH HOH A . F 5 HOH 21 221 33 HOH HOH A . F 5 HOH 22 222 23 HOH HOH A . F 5 HOH 23 223 88 HOH HOH A . F 5 HOH 24 224 35 HOH HOH A . F 5 HOH 25 225 111 HOH HOH A . F 5 HOH 26 226 26 HOH HOH A . F 5 HOH 27 227 24 HOH HOH A . F 5 HOH 28 228 11 HOH HOH A . F 5 HOH 29 229 54 HOH HOH A . F 5 HOH 30 230 53 HOH HOH A . F 5 HOH 31 231 17 HOH HOH A . F 5 HOH 32 232 44 HOH HOH A . F 5 HOH 33 233 89 HOH HOH A . F 5 HOH 34 234 25 HOH HOH A . F 5 HOH 35 235 115 HOH HOH A . F 5 HOH 36 236 114 HOH HOH A . F 5 HOH 37 237 13 HOH HOH A . F 5 HOH 38 238 1 HOH HOH A . F 5 HOH 39 239 79 HOH HOH A . F 5 HOH 40 240 19 HOH HOH A . F 5 HOH 41 241 103 HOH HOH A . F 5 HOH 42 242 21 HOH HOH A . F 5 HOH 43 243 48 HOH HOH A . F 5 HOH 44 244 42 HOH HOH A . F 5 HOH 45 245 87 HOH HOH A . F 5 HOH 46 246 59 HOH HOH A . F 5 HOH 47 247 5 HOH HOH A . F 5 HOH 48 248 9 HOH HOH A . F 5 HOH 49 249 75 HOH HOH A . F 5 HOH 50 250 80 HOH HOH A . F 5 HOH 51 251 100 HOH HOH A . F 5 HOH 52 252 30 HOH HOH A . F 5 HOH 53 253 66 HOH HOH A . F 5 HOH 54 254 61 HOH HOH A . F 5 HOH 55 255 18 HOH HOH A . F 5 HOH 56 256 10 HOH HOH A . F 5 HOH 57 257 20 HOH HOH A . F 5 HOH 58 258 2 HOH HOH A . F 5 HOH 59 259 83 HOH HOH A . F 5 HOH 60 260 3 HOH HOH A . F 5 HOH 61 261 77 HOH HOH A . F 5 HOH 62 262 14 HOH HOH A . F 5 HOH 63 263 50 HOH HOH A . F 5 HOH 64 264 15 HOH HOH A . F 5 HOH 65 265 73 HOH HOH A . F 5 HOH 66 266 69 HOH HOH A . F 5 HOH 67 267 71 HOH HOH A . F 5 HOH 68 268 85 HOH HOH A . F 5 HOH 69 269 78 HOH HOH A . F 5 HOH 70 270 58 HOH HOH A . F 5 HOH 71 271 22 HOH HOH A . F 5 HOH 72 272 31 HOH HOH A . F 5 HOH 73 273 16 HOH HOH A . F 5 HOH 74 274 37 HOH HOH A . F 5 HOH 75 275 28 HOH HOH A . F 5 HOH 76 276 92 HOH HOH A . F 5 HOH 77 277 41 HOH HOH A . F 5 HOH 78 278 43 HOH HOH A . F 5 HOH 79 279 36 HOH HOH A . F 5 HOH 80 280 101 HOH HOH A . F 5 HOH 81 281 32 HOH HOH A . F 5 HOH 82 282 40 HOH HOH A . F 5 HOH 83 283 74 HOH HOH A . F 5 HOH 84 284 56 HOH HOH A . F 5 HOH 85 285 94 HOH HOH A . F 5 HOH 86 286 6 HOH HOH A . F 5 HOH 87 287 47 HOH HOH A . F 5 HOH 88 288 108 HOH HOH A . F 5 HOH 89 289 84 HOH HOH A . F 5 HOH 90 290 38 HOH HOH A . F 5 HOH 91 291 51 HOH HOH A . F 5 HOH 92 292 106 HOH HOH A . F 5 HOH 93 293 65 HOH HOH A . F 5 HOH 94 294 57 HOH HOH A . F 5 HOH 95 295 96 HOH HOH A . F 5 HOH 96 296 63 HOH HOH A . F 5 HOH 97 297 70 HOH HOH A . F 5 HOH 98 298 67 HOH HOH A . F 5 HOH 99 299 64 HOH HOH A . F 5 HOH 100 300 95 HOH HOH A . F 5 HOH 101 301 45 HOH HOH A . F 5 HOH 102 302 109 HOH HOH A . F 5 HOH 103 303 86 HOH HOH A . F 5 HOH 104 304 90 HOH HOH A . F 5 HOH 105 305 72 HOH HOH A . F 5 HOH 106 306 91 HOH HOH A . F 5 HOH 107 307 52 HOH HOH A . F 5 HOH 108 308 107 HOH HOH A . F 5 HOH 109 309 82 HOH HOH A . F 5 HOH 110 310 97 HOH HOH A . F 5 HOH 111 311 81 HOH HOH A . F 5 HOH 112 312 62 HOH HOH A . F 5 HOH 113 313 55 HOH HOH A . F 5 HOH 114 314 60 HOH HOH A . F 5 HOH 115 315 27 HOH HOH A . F 5 HOH 116 316 99 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 15 ? "O4'" ? A U 15 "O4'" 2 1 Y 1 A U 15 ? "C2'" ? A U 15 "C2'" 3 1 Y 1 A U 15 ? "O2'" ? A U 15 "O2'" 4 1 Y 1 A U 15 ? "C1'" ? A U 15 "C1'" 5 1 Y 1 A U 15 ? N1 ? A U 15 N1 6 1 Y 1 A U 15 ? C2 ? A U 15 C2 7 1 Y 1 A U 15 ? O2 ? A U 15 O2 8 1 Y 1 A U 15 ? N3 ? A U 15 N3 9 1 Y 1 A U 15 ? C4 ? A U 15 C4 10 1 Y 1 A U 15 ? O4 ? A U 15 O4 11 1 Y 1 A U 15 ? C5 ? A U 15 C5 12 1 Y 1 A U 15 ? C6 ? A U 15 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? 3.8 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? 3.8 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8U5J _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.660 _cell.length_a_esd ? _cell.length_b 55.660 _cell.length_b_esd ? _cell.length_c 65.715 _cell.length_c_esd ? _cell.volume 176311.138 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8U5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ;P 32 2" ; _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8U5J _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.01 M magnesium sulphate heptahydrate, 0.05 M sodium cacodylate trihydrate pH 6.0, 1.8 M lithium sulfate monohydrate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-20 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 19.96 _reflns.entry_id 8U5J _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 38.87 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13366 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.58 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 17.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.29 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.761 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1304 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.953 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 35.53 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8U5J _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 38.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13319 _refine.ls_number_reflns_R_free 1332 _refine.ls_number_reflns_R_work 11987 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.57 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2051 _refine.ls_R_factor_R_free 0.2359 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2011 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.5064 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 38.87 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 940 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 762 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0061 ? 965 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1612 ? 1490 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0544 ? 188 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0106 ? 42 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.3661 ? 466 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.70 1.76 . . 130 1163 99.00 . . . . 0.2530 . . . . . . . . . . . 0.2747 'X-RAY DIFFRACTION' 1.76 1.83 . . 133 1176 99.02 . . . . 0.2411 . . . . . . . . . . . 0.2896 'X-RAY DIFFRACTION' 1.83 1.92 . . 128 1183 99.32 . . . . 0.2297 . . . . . . . . . . . 0.2620 'X-RAY DIFFRACTION' 1.92 2.02 . . 134 1185 99.55 . . . . 0.2217 . . . . . . . . . . . 0.2519 'X-RAY DIFFRACTION' 2.02 2.14 . . 129 1175 99.62 . . . . 0.2256 . . . . . . . . . . . 0.2575 'X-RAY DIFFRACTION' 2.14 2.31 . . 127 1195 99.47 . . . . 0.2005 . . . . . . . . . . . 0.2580 'X-RAY DIFFRACTION' 2.31 2.54 . . 135 1206 99.93 . . . . 0.2318 . . . . . . . . . . . 0.2588 'X-RAY DIFFRACTION' 2.54 2.91 . . 132 1193 99.85 . . . . 0.2298 . . . . . . . . . . . 0.2551 'X-RAY DIFFRACTION' 2.91 3.66 . . 136 1227 100.00 . . . . 0.1781 . . . . . . . . . . . 0.1823 'X-RAY DIFFRACTION' 3.66 38.87 . . 148 1284 99.93 . . . . 0.1741 . . . . . . . . . . . 0.2341 # _struct.entry_id 8U5J _struct.title 'Structure of Mango III variant aptamer bound to T01-07M-B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8U5J _struct_keywords.text 'RNA, aptamer, fluorescence, turn-on, fluorogenic, fluorophore, G-quartet, G-quadruplex' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8U5J _struct_ref.pdbx_db_accession 8U5J _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8U5J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 36 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8U5J _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 36 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 36 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 8 O6 ? ? ? 1_555 B K . K ? ? A G 8 A K 101 1_555 ? ? ? ? ? ? ? 2.677 ? ? metalc2 metalc ? ? A G 9 O6 ? ? ? 1_555 B K . K ? ? A G 9 A K 101 1_555 ? ? ? ? ? ? ? 2.878 ? ? metalc3 metalc ? ? A G 12 O6 ? ? ? 1_555 B K . K ? ? A G 12 A K 101 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc4 metalc ? ? A G 13 O6 ? ? ? 1_555 B K . K ? ? A G 13 A K 101 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc5 metalc ? ? A G 17 O6 ? ? ? 1_555 B K . K ? ? A G 17 A K 101 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc6 metalc ? ? A G 18 O6 ? ? ? 1_555 B K . K ? ? A G 18 A K 101 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc7 metalc ? ? A G 22 O6 ? ? ? 1_555 B K . K ? ? A G 22 A K 101 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc8 metalc ? ? A G 24 O6 ? ? ? 1_555 B K . K ? ? A G 24 A K 101 1_555 ? ? ? ? ? ? ? 2.829 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 1 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 1 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 1 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 2 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 2 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 3 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 3 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 4 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 4 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 4 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 5 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 5 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 5 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 31 N3 ? ? A A 6 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 31 O4 ? ? A A 6 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 30 N3 A ? A A 7 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 30 N3 B ? A A 7 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 30 O4 A ? A A 7 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 30 O4 B ? A A 7 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A G 12 O6 ? ? A G 8 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A G 12 N7 ? ? A G 8 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 8 N7 ? ? ? 1_555 A G 24 N2 ? ? A G 8 A G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 8 O6 ? ? ? 1_555 A G 24 N1 ? ? A G 8 A G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 13 O6 ? ? A G 9 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 13 N7 ? ? A G 9 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 9 N7 ? ? ? 1_555 A G 22 N2 ? ? A G 9 A G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 9 O6 ? ? ? 1_555 A G 22 N1 ? ? A G 9 A G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 11 A U 23 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A G 17 O6 ? ? A G 12 A G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 17 N7 ? ? A G 12 A G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 18 O6 ? ? A G 13 A G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A G 13 N2 ? ? ? 1_555 A G 18 N7 ? ? A G 13 A G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A U 14 N3 ? ? ? 1_555 A U 21 O4 ? ? A U 14 A U 21 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog34 hydrog ? ? A U 14 O4 ? ? ? 1_555 A U 21 N3 ? ? A U 14 A U 21 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A G 24 O6 ? ? A G 17 A G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A G 24 N7 ? ? A G 17 A G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 A G 22 O6 ? ? A G 18 A G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 22 N7 ? ? A G 18 A G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 18 N1 ? ? ? 1_555 A G 24 O6 ? ? A G 18 A G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 24 N7 ? ? A G 18 A G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 28 O6 ? ? A G 18 A G 28 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog42 hydrog ? ? A A 20 N6 ? ? ? 1_555 A A 27 N7 ? ? A A 20 A A 27 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog43 hydrog ? ? A A 20 N7 ? ? ? 1_555 A A 27 N6 ? ? A A 20 A A 27 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog44 hydrog ? ? A U 23 O2 ? ? ? 1_555 A A 29 N6 A ? A U 23 A A 29 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog45 hydrog ? ? A U 23 O2 ? ? ? 1_555 A A 29 N6 B ? A U 23 A A 29 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog46 hydrog ? ? A G 25 N1 ? ? ? 1_555 A G 28 O6 ? ? A G 25 A G 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? A G 25 N2 ? ? ? 1_555 A G 28 N7 ? ? A G 25 A G 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 8 ? A G 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 9 ? A G 9 ? 1_555 75.2 ? 2 O6 ? A G 8 ? A G 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 12 ? A G 12 ? 1_555 72.0 ? 3 O6 ? A G 9 ? A G 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 12 ? A G 12 ? 1_555 87.9 ? 4 O6 ? A G 8 ? A G 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 132.7 ? 5 O6 ? A G 9 ? A G 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 69.5 ? 6 O6 ? A G 12 ? A G 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 76.1 ? 7 O6 ? A G 8 ? A G 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 113.8 ? 8 O6 ? A G 9 ? A G 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 154.1 ? 9 O6 ? A G 12 ? A G 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 73.2 ? 10 O6 ? A G 13 ? A G 13 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 88.5 ? 11 O6 ? A G 8 ? A G 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 151.5 ? 12 O6 ? A G 9 ? A G 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 115.8 ? 13 O6 ? A G 12 ? A G 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 131.7 ? 14 O6 ? A G 13 ? A G 13 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 74.5 ? 15 O6 ? A G 17 ? A G 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 68.6 ? 16 O6 ? A G 8 ? A G 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 22 ? A G 22 ? 1_555 83.2 ? 17 O6 ? A G 9 ? A G 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 22 ? A G 22 ? 1_555 73.4 ? 18 O6 ? A G 12 ? A G 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 22 ? A G 22 ? 1_555 152.2 ? 19 O6 ? A G 13 ? A G 13 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 22 ? A G 22 ? 1_555 114.4 ? 20 O6 ? A G 17 ? A G 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 22 ? A G 22 ? 1_555 130.3 ? 21 O6 ? A G 18 ? A G 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 22 ? A G 22 ? 1_555 75.8 ? 22 O6 ? A G 8 ? A G 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 74.5 ? 23 O6 ? A G 9 ? A G 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 131.3 ? 24 O6 ? A G 12 ? A G 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 117.1 ? 25 O6 ? A G 13 ? A G 13 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 152.5 ? 26 O6 ? A G 17 ? A G 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 74.1 ? 27 O6 ? A G 18 ? A G 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 79.3 ? 28 O6 ? A G 22 ? A G 22 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 66.0 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 288 ? ? O A HOH 302 ? ? 2.09 2 1 O A HOH 229 ? ? O A HOH 277 ? ? 2.16 3 1 O A HOH 233 ? ? O A HOH 295 ? ? 2.17 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 284 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 x-y,-y,-z+1/3 5 -x,-x+y,-z+2/3 6 y,x,-z # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -18.0302315378 _pdbx_refine_tls.origin_y 17.2586091624 _pdbx_refine_tls.origin_z 5.68738769773 _pdbx_refine_tls.T[1][1] 0.177411846682 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0253228630407 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.000878145361817 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.136917127424 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0448269840053 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.124195296332 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.12213108868 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 1.00775978492 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.586754758924 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.68787917689 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -1.17916029978 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.93999737601 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0425758098982 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.300257271148 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.185038826887 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.193622529668 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.178882689353 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.021765987543 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.165060483379 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.142246594937 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0906785223628 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id F _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id Li _pdbx_refine_tls_group.end_auth_seq_id 1 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_entry_details.entry_id 8U5J _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DMS S S N N 73 DMS O O N N 74 DMS C1 C N N 75 DMS C2 C N N 76 DMS H11 H N N 77 DMS H12 H N N 78 DMS H13 H N N 79 DMS H21 H N N 80 DMS H22 H N N 81 DMS H23 H N N 82 G OP3 O N N 83 G P P N N 84 G OP1 O N N 85 G OP2 O N N 86 G "O5'" O N N 87 G "C5'" C N N 88 G "C4'" C N R 89 G "O4'" O N N 90 G "C3'" C N S 91 G "O3'" O N N 92 G "C2'" C N R 93 G "O2'" O N N 94 G "C1'" C N R 95 G N9 N Y N 96 G C8 C Y N 97 G N7 N Y N 98 G C5 C Y N 99 G C6 C N N 100 G O6 O N N 101 G N1 N N N 102 G C2 C N N 103 G N2 N N N 104 G N3 N N N 105 G C4 C Y N 106 G HOP3 H N N 107 G HOP2 H N N 108 G "H5'" H N N 109 G "H5''" H N N 110 G "H4'" H N N 111 G "H3'" H N N 112 G "HO3'" H N N 113 G "H2'" H N N 114 G "HO2'" H N N 115 G "H1'" H N N 116 G H8 H N N 117 G H1 H N N 118 G H21 H N N 119 G H22 H N N 120 HOH O O N N 121 HOH H1 H N N 122 HOH H2 H N N 123 K K K N N 124 U OP3 O N N 125 U P P N N 126 U OP1 O N N 127 U OP2 O N N 128 U "O5'" O N N 129 U "C5'" C N N 130 U "C4'" C N R 131 U "O4'" O N N 132 U "C3'" C N S 133 U "O3'" O N N 134 U "C2'" C N R 135 U "O2'" O N N 136 U "C1'" C N R 137 U N1 N N N 138 U C2 C N N 139 U O2 O N N 140 U N3 N N N 141 U C4 C N N 142 U O4 O N N 143 U C5 C N N 144 U C6 C N N 145 U HOP3 H N N 146 U HOP2 H N N 147 U "H5'" H N N 148 U "H5''" H N N 149 U "H4'" H N N 150 U "H3'" H N N 151 U "HO3'" H N N 152 U "H2'" H N N 153 U "HO2'" H N N 154 U "H1'" H N N 155 U H3 H N N 156 U H5 H N N 157 U H6 H N N 158 W6F C01 C N N 159 W6F C02 C Y N 160 W6F C03 C Y N 161 W6F C04 C Y N 162 W6F C05 C Y N 163 W6F C06 C N N 164 W6F C07 C N N 165 W6F C08 C Y N 166 W6F C10 C Y N 167 W6F C11 C Y N 168 W6F C12 C Y N 169 W6F C13 C Y N 170 W6F C14 C Y N 171 W6F C15 C Y N 172 W6F C17 C N N 173 W6F C18 C N N 174 W6F C21 C N N 175 W6F C22 C N N 176 W6F C24 C N N 177 W6F C25 C N N 178 W6F C27 C N N 179 W6F C28 C N N 180 W6F C30 C N N 181 W6F C31 C N N 182 W6F C33 C N N 183 W6F C35 C N N 184 W6F C36 C N N 185 W6F C37 C N N 186 W6F C38 C N N 187 W6F C39 C N S 188 W6F C41 C N N 189 W6F C42 C N R 190 W6F C44 C N N 191 W6F C47 C N S 192 W6F C48 C N N 193 W6F C49 C N N 194 W6F C51 C N N 195 W6F C52 C Y N 196 W6F C53 C Y N 197 W6F N16 N Y N 198 W6F N20 N N N 199 W6F N32 N N N 200 W6F N43 N N N 201 W6F N46 N N N 202 W6F N50 N N N 203 W6F O19 O N N 204 W6F O23 O N N 205 W6F O26 O N N 206 W6F O29 O N N 207 W6F O34 O N N 208 W6F O45 O N N 209 W6F S09 S Y N 210 W6F S40 S N N 211 W6F H011 H N N 212 W6F H013 H N N 213 W6F H012 H N N 214 W6F H031 H N N 215 W6F H041 H N N 216 W6F H071 H N N 217 W6F H111 H N N 218 W6F H121 H N N 219 W6F H131 H N N 220 W6F H141 H N N 221 W6F H172 H N N 222 W6F H171 H N N 223 W6F H211 H N N 224 W6F H212 H N N 225 W6F H221 H N N 226 W6F H222 H N N 227 W6F H241 H N N 228 W6F H242 H N N 229 W6F H252 H N N 230 W6F H251 H N N 231 W6F H271 H N N 232 W6F H272 H N N 233 W6F H282 H N N 234 W6F H281 H N N 235 W6F H301 H N N 236 W6F H302 H N N 237 W6F H312 H N N 238 W6F H311 H N N 239 W6F H351 H N N 240 W6F H352 H N N 241 W6F H361 H N N 242 W6F H362 H N N 243 W6F H372 H N N 244 W6F H371 H N N 245 W6F H381 H N N 246 W6F H382 H N N 247 W6F H391 H N N 248 W6F H411 H N N 249 W6F H412 H N N 250 W6F H421 H N N 251 W6F H471 H N N 252 W6F H481 H N N 253 W6F H491 H N N 254 W6F H513 H N N 255 W6F H511 H N N 256 W6F H512 H N N 257 W6F H531 H N N 258 W6F H201 H N N 259 W6F H321 H N N 260 W6F H431 H N N 261 W6F H461 H N N 262 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DMS S O doub N N 76 DMS S C1 sing N N 77 DMS S C2 sing N N 78 DMS C1 H11 sing N N 79 DMS C1 H12 sing N N 80 DMS C1 H13 sing N N 81 DMS C2 H21 sing N N 82 DMS C2 H22 sing N N 83 DMS C2 H23 sing N N 84 G OP3 P sing N N 85 G OP3 HOP3 sing N N 86 G P OP1 doub N N 87 G P OP2 sing N N 88 G P "O5'" sing N N 89 G OP2 HOP2 sing N N 90 G "O5'" "C5'" sing N N 91 G "C5'" "C4'" sing N N 92 G "C5'" "H5'" sing N N 93 G "C5'" "H5''" sing N N 94 G "C4'" "O4'" sing N N 95 G "C4'" "C3'" sing N N 96 G "C4'" "H4'" sing N N 97 G "O4'" "C1'" sing N N 98 G "C3'" "O3'" sing N N 99 G "C3'" "C2'" sing N N 100 G "C3'" "H3'" sing N N 101 G "O3'" "HO3'" sing N N 102 G "C2'" "O2'" sing N N 103 G "C2'" "C1'" sing N N 104 G "C2'" "H2'" sing N N 105 G "O2'" "HO2'" sing N N 106 G "C1'" N9 sing N N 107 G "C1'" "H1'" sing N N 108 G N9 C8 sing Y N 109 G N9 C4 sing Y N 110 G C8 N7 doub Y N 111 G C8 H8 sing N N 112 G N7 C5 sing Y N 113 G C5 C6 sing N N 114 G C5 C4 doub Y N 115 G C6 O6 doub N N 116 G C6 N1 sing N N 117 G N1 C2 sing N N 118 G N1 H1 sing N N 119 G C2 N2 sing N N 120 G C2 N3 doub N N 121 G N2 H21 sing N N 122 G N2 H22 sing N N 123 G N3 C4 sing N N 124 HOH O H1 sing N N 125 HOH O H2 sing N N 126 U OP3 P sing N N 127 U OP3 HOP3 sing N N 128 U P OP1 doub N N 129 U P OP2 sing N N 130 U P "O5'" sing N N 131 U OP2 HOP2 sing N N 132 U "O5'" "C5'" sing N N 133 U "C5'" "C4'" sing N N 134 U "C5'" "H5'" sing N N 135 U "C5'" "H5''" sing N N 136 U "C4'" "O4'" sing N N 137 U "C4'" "C3'" sing N N 138 U "C4'" "H4'" sing N N 139 U "O4'" "C1'" sing N N 140 U "C3'" "O3'" sing N N 141 U "C3'" "C2'" sing N N 142 U "C3'" "H3'" sing N N 143 U "O3'" "HO3'" sing N N 144 U "C2'" "O2'" sing N N 145 U "C2'" "C1'" sing N N 146 U "C2'" "H2'" sing N N 147 U "O2'" "HO2'" sing N N 148 U "C1'" N1 sing N N 149 U "C1'" "H1'" sing N N 150 U N1 C2 sing N N 151 U N1 C6 sing N N 152 U C2 O2 doub N N 153 U C2 N3 sing N N 154 U N3 C4 sing N N 155 U N3 H3 sing N N 156 U C4 O4 doub N N 157 U C4 C5 sing N N 158 U C5 C6 doub N N 159 U C5 H5 sing N N 160 U C6 H6 sing N N 161 W6F C01 C02 sing N N 162 W6F C02 C03 doub Y N 163 W6F C02 C53 sing Y N 164 W6F C03 C04 sing Y N 165 W6F C04 C05 doub Y N 166 W6F C05 C06 sing N N 167 W6F C05 C52 sing Y N 168 W6F C06 C07 doub N E 169 W6F C06 C48 sing N N 170 W6F C07 C08 sing N N 171 W6F C08 S09 sing Y N 172 W6F C08 N16 doub Y N 173 W6F S09 C10 sing Y N 174 W6F C10 C11 doub Y N 175 W6F C10 C15 sing Y N 176 W6F C11 C12 sing Y N 177 W6F C12 C13 doub Y N 178 W6F C13 C14 sing Y N 179 W6F C14 C15 doub Y N 180 W6F C15 N16 sing Y N 181 W6F N16 C17 sing N N 182 W6F C17 C18 sing N N 183 W6F C18 O19 doub N N 184 W6F C18 N20 sing N N 185 W6F N20 C21 sing N N 186 W6F C21 C22 sing N N 187 W6F C22 O23 sing N N 188 W6F O23 C24 sing N N 189 W6F C24 C25 sing N N 190 W6F C25 O26 sing N N 191 W6F O26 C27 sing N N 192 W6F C27 C28 sing N N 193 W6F C28 O29 sing N N 194 W6F O29 C30 sing N N 195 W6F C30 C31 sing N N 196 W6F C31 N32 sing N N 197 W6F N32 C33 sing N N 198 W6F C33 O34 doub N N 199 W6F C33 C35 sing N N 200 W6F C35 C36 sing N N 201 W6F C36 C37 sing N N 202 W6F C37 C38 sing N N 203 W6F C39 S40 sing N N 204 W6F C39 C47 sing N N 205 W6F C39 C38 sing N N 206 W6F S40 C41 sing N N 207 W6F C41 C42 sing N N 208 W6F C42 N43 sing N N 209 W6F C42 C47 sing N N 210 W6F N43 C44 sing N N 211 W6F C44 O45 doub N N 212 W6F C44 N46 sing N N 213 W6F N46 C47 sing N N 214 W6F C48 C49 doub N N 215 W6F C49 N50 sing N N 216 W6F N50 C51 sing N N 217 W6F N50 C52 sing N N 218 W6F C52 C53 doub Y N 219 W6F C01 H011 sing N N 220 W6F C01 H013 sing N N 221 W6F C01 H012 sing N N 222 W6F C03 H031 sing N N 223 W6F C04 H041 sing N N 224 W6F C07 H071 sing N N 225 W6F C11 H111 sing N N 226 W6F C12 H121 sing N N 227 W6F C13 H131 sing N N 228 W6F C14 H141 sing N N 229 W6F C17 H172 sing N N 230 W6F C17 H171 sing N N 231 W6F C21 H211 sing N N 232 W6F C21 H212 sing N N 233 W6F C22 H221 sing N N 234 W6F C22 H222 sing N N 235 W6F C24 H241 sing N N 236 W6F C24 H242 sing N N 237 W6F C25 H252 sing N N 238 W6F C25 H251 sing N N 239 W6F C27 H271 sing N N 240 W6F C27 H272 sing N N 241 W6F C28 H282 sing N N 242 W6F C28 H281 sing N N 243 W6F C30 H301 sing N N 244 W6F C30 H302 sing N N 245 W6F C31 H312 sing N N 246 W6F C31 H311 sing N N 247 W6F C35 H351 sing N N 248 W6F C35 H352 sing N N 249 W6F C36 H361 sing N N 250 W6F C36 H362 sing N N 251 W6F C37 H372 sing N N 252 W6F C37 H371 sing N N 253 W6F C38 H381 sing N N 254 W6F C38 H382 sing N N 255 W6F C39 H391 sing N N 256 W6F C41 H411 sing N N 257 W6F C41 H412 sing N N 258 W6F C42 H421 sing N N 259 W6F C47 H471 sing N N 260 W6F C48 H481 sing N N 261 W6F C49 H491 sing N N 262 W6F C51 H513 sing N N 263 W6F C51 H511 sing N N 264 W6F C51 H512 sing N N 265 W6F C53 H531 sing N N 266 W6F N20 H201 sing N N 267 W6F N32 H321 sing N N 268 W6F N43 H431 sing N N 269 W6F N46 H461 sing N N 270 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8U5J 'double helix' 8U5J 'bulge loop' 8U5J 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 36 1_555 -0.215 -0.111 0.155 2.401 -7.847 -0.881 1 A_G1:C36_A A 1 ? A 36 ? 19 1 1 A U 2 1_555 A A 35 1_555 0.027 -0.170 0.289 0.933 -8.033 -1.682 2 A_U2:A35_A A 2 ? A 35 ? 20 1 1 A A 3 1_555 A U 34 1_555 0.029 -0.208 0.494 2.128 -2.355 3.973 3 A_A3:U34_A A 3 ? A 34 ? 20 1 1 A C 4 1_555 A G 33 1_555 0.214 -0.205 0.395 -1.490 -7.304 0.819 4 A_C4:G33_A A 4 ? A 33 ? 19 1 1 A G 5 1_555 A C 32 1_555 -0.277 0.123 -0.224 -6.887 -12.470 1.653 5 A_G5:C32_A A 5 ? A 32 ? 19 1 1 A A 6 1_555 A U 31 1_555 0.109 -0.148 -0.027 -5.766 -11.426 3.607 6 A_A6:U31_A A 6 ? A 31 ? 20 1 1 A A 7 1_555 A U 30 1_555 -0.064 -0.187 0.296 -1.290 -11.230 -0.381 7 A_A7:U30_A A 7 ? A 30 ? 20 1 1 A U 23 1_555 A A 11 1_555 1.426 3.084 0.707 9.929 14.764 -126.279 8 A_U23:A11_A A 23 ? A 11 ? ? ? 1 A G 24 1_555 A G 8 1_555 1.675 3.317 1.060 -27.748 -0.390 -89.255 9 A_G24:G8_A A 24 ? A 8 ? 6 3 1 A G 18 1_555 A G 22 1_555 1.619 3.436 -0.742 23.330 -11.303 -91.904 10 A_G18:G22_A A 18 ? A 22 ? 6 3 1 A U 14 1_555 A U 21 1_555 -1.725 1.363 0.045 -11.658 0.506 -176.111 11 A_U14:U21_A A 14 ? A 21 ? 12 2 1 A G 9 1_555 A G 13 1_555 1.440 3.548 -0.287 4.687 -4.980 -89.995 12 A_G9:G13_A A 9 ? A 13 ? 6 3 1 A A 20 1_555 A A 27 1_555 -6.172 5.096 -0.162 3.190 8.558 -176.625 13 A_A20:A27_A A 20 ? A 27 ? 2 8 1 A G 25 1_555 A G 28 1_555 1.806 3.429 0.045 3.563 -6.160 -87.360 14 A_G25:G28_A A 25 ? A 28 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 36 1_555 A U 2 1_555 A A 35 1_555 0.675 -1.987 3.321 -1.704 3.962 27.470 -5.055 -1.801 2.964 8.278 3.561 27.800 1 AA_G1U2:A35C36_AA A 1 ? A 36 ? A 2 ? A 35 ? 1 A U 2 1_555 A A 35 1_555 A A 3 1_555 A U 34 1_555 -0.360 -1.885 2.770 -4.633 14.903 29.196 -5.144 0.065 1.673 27.249 8.471 33.025 2 AA_U2A3:U34A35_AA A 2 ? A 35 ? A 3 ? A 34 ? 1 A A 3 1_555 A U 34 1_555 A C 4 1_555 A G 33 1_555 -0.116 -1.530 3.420 1.077 5.586 32.608 -3.637 0.387 3.117 9.855 -1.900 33.087 3 AA_A3C4:G33U34_AA A 3 ? A 34 ? A 4 ? A 33 ? 1 A C 4 1_555 A G 33 1_555 A G 5 1_555 A C 32 1_555 0.652 -1.297 3.359 6.330 7.416 29.908 -3.788 -0.014 3.030 13.911 -11.875 31.423 4 AA_C4G5:C32G33_AA A 4 ? A 33 ? A 5 ? A 32 ? 1 A G 5 1_555 A C 32 1_555 A A 6 1_555 A U 31 1_555 1.052 -1.899 3.301 1.298 3.678 26.295 -5.075 -1.955 3.059 8.028 -2.834 26.578 5 AA_G5A6:U31C32_AA A 5 ? A 32 ? A 6 ? A 31 ? 1 A A 6 1_555 A U 31 1_555 A A 7 1_555 A U 30 1_555 0.263 -1.658 3.187 1.957 -0.627 32.495 -2.851 -0.134 3.228 -1.120 -3.493 32.558 6 AA_A6A7:U30U31_AA A 6 ? A 31 ? A 7 ? A 30 ? 1 A A 7 1_555 A U 30 1_555 A U 23 1_555 A A 11 1_555 -1.982 1.764 -4.334 91.592 115.119 138.203 1.469 0.532 -4.019 58.365 -46.436 168.409 7 AA_A7U23:A11U30_AA A 7 ? A 30 ? A 23 ? A 11 ? 1 A U 23 1_555 A A 11 1_555 A G 24 1_555 A G 8 1_555 -3.546 1.078 2.182 -10.660 -165.094 -169.415 -0.438 -1.780 2.251 82.578 -5.332 -178.660 8 AA_U23G24:G8A11_AA A 23 ? A 11 ? A 24 ? A 8 ? 1 A G 24 1_555 A G 8 1_555 A G 18 1_555 A G 22 1_555 0.809 1.206 3.056 6.461 -5.302 -59.745 -0.957 1.102 3.050 5.294 6.452 -60.273 9 AA_G24G18:G22G8_AA A 24 ? A 8 ? A 18 ? A 22 ? 1 A G 18 1_555 A G 22 1_555 A U 14 1_555 A U 21 1_555 4.088 -0.718 5.969 11.857 -6.032 -36.752 2.259 8.450 4.329 9.205 18.093 -39.008 10 AA_G18U14:U21G22_AA A 18 ? A 22 ? A 14 ? A 21 ? 1 A U 14 1_555 A U 21 1_555 A G 9 1_555 A G 13 1_555 -0.167 0.061 -6.316 -12.454 -13.230 -146.371 -0.146 0.021 -6.312 6.905 -6.500 -146.806 11 AA_U14G9:G13U21_AA A 14 ? A 21 ? A 9 ? A 13 ? 1 A A 20 1_555 A A 27 1_555 A G 25 1_555 A G 28 1_555 2.161 -1.080 3.219 -4.871 1.538 85.017 -0.833 -1.705 3.099 1.137 3.601 85.141 12 AA_A20G25:G28A27_AA A 20 ? A 27 ? A 25 ? A 28 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id W6F _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id W6F _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6E8S _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 32 2 1' _space_group.name_Hall ;P 32 2" ; _space_group.IT_number 154 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8U5J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.017966 _atom_sites.fract_transf_matrix[1][2] 0.010373 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020746 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015217 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_