HEADER TRANSPORT PROTEIN 14-SEP-23 8U79 TITLE CRYSTAL STRUCTURE OF SUBSTRATE BINDING PROTEIN OF THERMUS THERMOPHILUS TITLE 2 TAXI-TRAP PROTEIN WITH L-GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGENIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA1157; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SUBSTRATE BINDING PROTEIN, TRAP PROTEIN, GLUTAMINE, TAXI-TRAP, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.ANTONY,M.CURRIE,R.DOBSON REVDAT 1 19-MAR-25 8U79 0 JRNL AUTH I.R.ANTONY,M.J.CURRIE,M.C.NEWTON-VESTY,Z.D.TILLETT, JRNL AUTH 2 T.M.ALLISON,R.C.J.DOBSON JRNL TITL CRYSTAL STRUCTURE OF A GLUTAMATE-BINDING SUBUNIT FROM A JRNL TITL 2 TAXI-TRAP TRANSPORTER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 112590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.959 REMARK 3 FREE R VALUE TEST SET COUNT : 5583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7493 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 426 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50500 REMARK 3 B22 (A**2) : 0.19500 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.017 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.827 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.981 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2642 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2569 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3619 ; 2.030 ; 1.816 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5927 ; 0.672 ; 1.752 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ;11.063 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;12.464 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3281 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 619 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 602 ; 0.281 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 76 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1295 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.230 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 5 ; 0.402 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1356 ; 4.336 ; 1.266 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1356 ; 4.334 ; 1.266 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1741 ; 6.331 ; 2.288 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1742 ; 6.329 ; 2.288 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1286 ; 6.492 ; 1.590 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1285 ; 6.490 ; 1.590 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1874 ; 9.360 ; 2.774 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1875 ; 9.358 ; 2.773 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5211 ; 4.146 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8U79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953732 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.110 REMARK 200 RESOLUTION RANGE LOW (A) : 43.552 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 1.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM CITRATE DIBASIC, PEG 3350, PH REMARK 280 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.77350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.95650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.77350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.95650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 PHE A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 243 H VAL A 244 1.16 REMARK 500 HD1 HIS A 300 H GLY A 302 1.25 REMARK 500 HG SER A 27 H ALA A 169 1.25 REMARK 500 HD11 ILE A 217 HE2 TYR A 221 1.26 REMARK 500 HD1 HIS A 279 H ASN A 281 1.28 REMARK 500 HZ1 LYS A 235 O HOH A 506 1.37 REMARK 500 O ILE A 214 H ILE A 217 1.51 REMARK 500 O LEU A 211 H GLN A 215 1.52 REMARK 500 O LEU A 211 H GLN A 215 1.54 REMARK 500 OE1 GLN A 247 O HOH A 503 1.63 REMARK 500 N GLN A 18 O HOH A 504 1.94 REMARK 500 OD1 ASP A 210 O HOH A 505 1.95 REMARK 500 O HOH A 530 O HOH A 714 2.01 REMARK 500 O HOH A 503 O HOH A 565 2.08 REMARK 500 O HOH A 661 O HOH A 789 2.10 REMARK 500 O HOH A 578 O HOH A 745 2.15 REMARK 500 O HOH A 565 O HOH A 571 2.15 REMARK 500 O HOH A 524 O HOH A 757 2.16 REMARK 500 O HOH A 534 O HOH A 752 2.19 REMARK 500 N GLN A 18 O HOH A 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 308 O HOH A 513 1655 1.29 REMARK 500 O HOH A 711 O HOH A 713 1455 1.48 REMARK 500 HZ1 LYS A 308 O HOH A 513 1655 1.51 REMARK 500 O HOH A 680 O HOH A 759 2554 1.52 REMARK 500 OE2 GLU A 152 O HOH A 514 2554 1.63 REMARK 500 NZ LYS A 308 O HOH A 513 1655 1.67 REMARK 500 O HOH A 513 O HOH A 713 1455 1.77 REMARK 500 O HOH A 508 O HOH A 638 4544 2.11 REMARK 500 ND2 ASN A 228 O HOH A 599 3544 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 CG - CD - NE ANGL. DEV. = -21.9 DEGREES REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 221 CB - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 GLY A 270 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 -115.13 -139.30 REMARK 500 CYS A 90 -35.09 81.46 REMARK 500 CYS A 90 -40.95 84.05 REMARK 500 THR A 243 -158.22 -147.46 REMARK 500 VAL A 246 -167.75 -122.22 REMARK 500 VAL A 246 -162.33 -122.22 REMARK 500 ASN A 271 64.61 -103.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 89 CYS A 90 145.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 55 0.15 SIDE CHAIN REMARK 500 ARG A 213 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 823 DISTANCE = 6.14 ANGSTROMS DBREF 8U79 A 18 314 UNP Q5SJ57 Q5SJ57_THET8 18 314 SEQADV 8U79 HIS A -3 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 MET A -2 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 ALA A -1 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 HIS A 0 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 HIS A 1 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 HIS A 2 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 HIS A 3 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 HIS A 4 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 HIS A 5 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 SER A 6 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 ALA A 7 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 ALA A 8 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 LEU A 9 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 GLU A 10 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 VAL A 11 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 LEU A 12 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 PHE A 13 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 GLN A 14 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 GLY A 15 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 PRO A 16 UNP Q5SJ57 EXPRESSION TAG SEQADV 8U79 GLY A 17 UNP Q5SJ57 EXPRESSION TAG SEQRES 1 A 318 HIS MET ALA HIS HIS HIS HIS HIS HIS SER ALA ALA LEU SEQRES 2 A 318 GLU VAL LEU PHE GLN GLY PRO GLY GLN GLU PHE ILE THR SEQRES 3 A 318 ILE GLY SER GLY SER THR THR GLY VAL TYR PHE PRO VAL SEQRES 4 A 318 ALA THR GLY ILE ALA LYS LEU VAL ASN ASP ALA ASN VAL SEQRES 5 A 318 GLY ILE ARG ALA ASN ALA ARG SER THR GLY GLY SER VAL SEQRES 6 A 318 ALA ASN ILE ASN ALA ILE ASN ALA GLY GLU PHE GLU MET SEQRES 7 A 318 ALA LEU ALA GLN ASN ASP ILE ALA TYR TYR ALA TYR GLN SEQRES 8 A 318 GLY CYS CYS ILE PRO ALA PHE GLU GLY LYS PRO VAL LYS SEQRES 9 A 318 THR ILE ARG ALA LEU ALA ALA LEU TYR PRO GLU VAL VAL SEQRES 10 A 318 HIS VAL VAL ALA ARG LYS ASP ALA GLY ILE ARG THR VAL SEQRES 11 A 318 ALA ASP LEU LYS GLY LYS ARG VAL VAL VAL GLY ASP VAL SEQRES 12 A 318 GLY SER GLY THR GLU GLN ASN ALA ARG GLN ILE LEU GLU SEQRES 13 A 318 ALA TYR GLY LEU THR PHE ASP ASP LEU GLY GLN ALA ILE SEQRES 14 A 318 ARG VAL SER ALA SER GLN GLY ILE GLN LEU MET GLN ASP SEQRES 15 A 318 LYS ARG ALA ASP ALA LEU PHE TYR THR VAL GLY LEU GLY SEQRES 16 A 318 ALA SER ALA ILE GLN GLN LEU ALA LEU THR THR PRO ILE SEQRES 17 A 318 ALA LEU VAL ALA VAL ASP LEU ASN ARG ILE GLN ALA ILE SEQRES 18 A 318 ALA LYS LYS TYR PRO PHE TYR VAL GLY PHE ASN ILE PRO SEQRES 19 A 318 GLY GLY THR TYR LYS GLY VAL ASP VAL THR THR PRO THR SEQRES 20 A 318 VAL ALA VAL GLN ALA MET LEU ILE ALA SER GLU ARG LEU SEQRES 21 A 318 SER GLU GLU THR VAL TYR LYS PHE MET LYS ALA VAL PHE SEQRES 22 A 318 GLY ASN LEU GLU ALA PHE LYS LYS ILE HIS PRO ASN LEU SEQRES 23 A 318 GLU ARG PHE PHE GLY LEU GLU LYS ALA VAL LYS GLY LEU SEQRES 24 A 318 PRO ILE PRO LEU HIS PRO GLY ALA GLU ARG PHE TYR LYS SEQRES 25 A 318 GLU ALA GLY VAL LEU LYS HET GLU A 401 18 HET EDO A 402 10 HET CIT A 403 18 HETNAM GLU GLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CIT CITRIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GLU C5 H9 N O4 FORMUL 3 EDO C2 H6 O2 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *323(H2 O) HELIX 1 AA1 VAL A 31 ALA A 46 1 16 HELIX 2 AA2 GLY A 59 ALA A 69 1 11 HELIX 3 AA3 ASN A 79 GLY A 88 1 10 HELIX 4 AA4 THR A 125 LYS A 130 5 6 HELIX 5 AA5 SER A 141 TYR A 154 1 14 HELIX 6 AA6 THR A 157 LEU A 161 5 5 HELIX 7 AA7 SER A 168 ASP A 178 1 11 HELIX 8 AA8 ALA A 192 THR A 202 1 11 HELIX 9 AA9 ASP A 210 ALA A 216 1 7 HELIX 10 AB1 SER A 257 GLY A 270 1 14 HELIX 11 AB2 ASN A 271 LYS A 277 1 7 HELIX 12 AB3 HIS A 279 PHE A 286 1 8 HELIX 13 AB4 GLY A 287 VAL A 292 1 6 HELIX 14 AB5 HIS A 300 ALA A 310 1 11 SHEET 1 AA1 6 ILE A 50 ARG A 55 0 SHEET 2 AA1 6 GLU A 19 GLY A 24 1 N ILE A 23 O ASN A 53 SHEET 3 AA1 6 MET A 74 GLN A 78 1 O MET A 74 N GLY A 24 SHEET 4 AA1 6 THR A 241 SER A 253 -1 O ILE A 251 N ALA A 75 SHEET 5 AA1 6 ILE A 102 ARG A 118 -1 N LEU A 108 O ALA A 248 SHEET 6 AA1 6 ILE A 204 LEU A 206 -1 O ALA A 205 N ALA A 117 SHEET 1 AA2 6 GLN A 163 ILE A 165 0 SHEET 2 AA2 6 ARG A 133 VAL A 135 1 N VAL A 134 O ILE A 165 SHEET 3 AA2 6 ALA A 183 VAL A 188 1 O PHE A 185 N VAL A 135 SHEET 4 AA2 6 ILE A 102 ARG A 118 -1 N VAL A 116 O LEU A 184 SHEET 5 AA2 6 THR A 241 SER A 253 -1 O ALA A 248 N LEU A 108 SHEET 6 AA2 6 VAL A 225 ILE A 229 -1 N PHE A 227 O THR A 243 SSBOND 1 CYS A 89 CYS A 90 1555 1555 2.18 CRYST1 51.547 67.913 81.170 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012320 0.00000