HEADER RNA BINDING PROTEIN 15-SEP-23 8U7B TITLE CRYSTAL STRUCTURE OF APO FORM OF SHORT PROKARYOTIC ARGONAUTE TIR-APAZ TITLE 2 (SPARTA) HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIR DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: TIR-APAZ; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PIWI DOMAIN-CONTAINING PROTEIN; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: SHORT PAGO; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOFLAVIFILUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 1393122; SOURCE 4 GENE: SAMN05660895_1670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOFLAVIFILUM THERMOPHILUM; SOURCE 9 ORGANISM_TAXID: 1393122; SOURCE 10 GENE: SAMN05660895_1671; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SPARTA, SHORT PROKARYOTIC ARGONAUTE, TIR, APAZ, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,A.K.AGGARWAL REVDAT 2 19-JUN-24 8U7B 1 JRNL REVDAT 1 12-JUN-24 8U7B 0 JRNL AUTH J.KOTTUR,R.MALIK,A.K.AGGARWAL JRNL TITL NUCLEIC ACID MEDIATED ACTIVATION OF A SHORT PROKARYOTIC JRNL TITL 2 ARGONAUTE IMMUNE SYSTEM. JRNL REF NAT COMMUN V. 15 4852 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38844755 JRNL DOI 10.1038/S41467-024-49271-4 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20RC3_4406: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.6 REMARK 3 NUMBER OF REFLECTIONS : 40895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7100 - 6.5600 1.00 4105 232 0.2271 0.2647 REMARK 3 2 6.5600 - 5.2100 1.00 3935 202 0.2056 0.2555 REMARK 3 3 5.2100 - 4.5500 1.00 3872 217 0.1337 0.2094 REMARK 3 4 4.5500 - 4.1300 1.00 3832 224 0.1218 0.1850 REMARK 3 5 4.1300 - 3.8400 1.00 3835 199 0.1375 0.1964 REMARK 3 6 3.8400 - 3.6100 1.00 3832 195 0.1579 0.2254 REMARK 3 7 3.6100 - 3.4300 1.00 3798 203 0.1752 0.2639 REMARK 3 8 3.4300 - 3.2800 1.00 3786 198 0.1974 0.2716 REMARK 3 9 3.2800 - 3.1600 0.83 3172 157 0.2239 0.3026 REMARK 3 10 3.1600 - 3.0500 0.51 1930 107 0.2501 0.3042 REMARK 3 11 3.0500 - 2.9500 0.32 1218 57 0.2723 0.3497 REMARK 3 12 2.9500 - 2.8700 0.21 790 43 0.0000 0.2843 REMARK 3 13 2.8700 - 2.7900 0.10 396 21 0.3218 0.3220 REMARK 3 14 2.7900 - 2.7200 0.06 228 13 0.3123 0.3166 REMARK 3 15 2.7200 - 2.6600 0.02 96 2 0.3382 0.1547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7646 REMARK 3 ANGLE : 0.608 10380 REMARK 3 CHIRALITY : 0.044 1141 REMARK 3 PLANARITY : 0.004 1315 REMARK 3 DIHEDRAL : 4.947 1002 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4-6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979338 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 (BUILT REMARK 200 20220110) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 170.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.5, 0.8 M REMARK 280 SODIUM PHOSPHATE MONOBASIC, 1.2 M POTASSIUM PHOSPHATE DIBASIC, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.27133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.13567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.70350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.56783 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 152.83917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.27133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.13567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.56783 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 91.70350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 152.83917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASP B 40 REMARK 465 LYS B 41 REMARK 465 GLY B 42 REMARK 465 VAL B 43 REMARK 465 ASP B 44 REMARK 465 LYS B 354 REMARK 465 ILE B 433 REMARK 465 ASN B 434 REMARK 465 ASN B 435 REMARK 465 PHE B 436 REMARK 465 GLU B 437 REMARK 465 GLU B 438 REMARK 465 ASP B 439 REMARK 465 THR B 440 REMARK 465 GLU B 441 REMARK 465 ASP B 442 REMARK 465 LEU B 443 REMARK 465 ASP B 444 REMARK 465 GLU B 445 REMARK 465 LEU B 446 REMARK 465 GLU B 447 REMARK 465 ASP B 448 REMARK 465 ILE B 449 REMARK 465 GLU B 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 HIS B 87 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 ILE B 179 CG1 CG2 CD1 REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 212 CG CD OE1 OE2 REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 263 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 268 CG CD1 CD2 REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 GLU B 284 CG CD OE1 OE2 REMARK 470 GLN B 286 CG CD OE1 NE2 REMARK 470 LYS B 289 CG CD CE NZ REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 LEU B 300 CG CD1 CD2 REMARK 470 GLU B 301 CG CD OE1 OE2 REMARK 470 LYS B 302 CG CD CE NZ REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 LYS B 307 CG CD CE NZ REMARK 470 ILE B 308 CG1 CG2 CD1 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 ILE B 348 CG1 CG2 CD1 REMARK 470 ASN B 349 CG OD1 ND2 REMARK 470 LYS B 352 CG CD CE NZ REMARK 470 SER B 355 OG REMARK 470 ILE B 356 CG1 CG2 CD1 REMARK 470 ARG B 362 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 363 CG CD CE NZ REMARK 470 GLN B 388 CG CD OE1 NE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 LEU B 402 CG CD1 CD2 REMARK 470 LYS B 406 CG CD CE NZ REMARK 470 LYS B 413 CG CD CE NZ REMARK 470 SER B 420 OG REMARK 470 GLU B 421 CG CD OE1 OE2 REMARK 470 GLU C 3 CG CD OE1 OE2 REMARK 470 GLU C 8 CG CD OE1 OE2 REMARK 470 LYS C 130 CG CD CE NZ REMARK 470 ASN C 131 CG OD1 ND2 REMARK 470 ASP C 132 CG OD1 OD2 REMARK 470 GLU C 133 CG CD OE1 OE2 REMARK 470 GLU C 134 CG CD OE1 OE2 REMARK 470 LYS C 172 CG CD CE NZ REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ASN C 201 CG OD1 ND2 REMARK 470 LYS C 286 CG CD CE NZ REMARK 470 LYS C 287 CG CD CE NZ REMARK 470 ILE C 288 CD1 REMARK 470 GLU C 289 CG CD OE1 OE2 REMARK 470 LYS C 290 CG CD CE NZ REMARK 470 LYS C 292 CG CD CE NZ REMARK 470 PRO C 294 CG CD REMARK 470 ASN C 322 CG OD1 ND2 REMARK 470 GLU C 324 CG CD OE1 OE2 REMARK 470 LYS C 325 CG CD CE NZ REMARK 470 LYS C 331 CG CD CE NZ REMARK 470 LYS C 333 CG CD CE NZ REMARK 470 LYS C 336 CG CD CE NZ REMARK 470 LYS C 347 CG CD CE NZ REMARK 470 GLU C 348 CG CD OE1 OE2 REMARK 470 LYS C 355 CG CD CE NZ REMARK 470 GLU C 369 CG CD OE1 OE2 REMARK 470 LYS C 379 CG CD CE NZ REMARK 470 LYS C 392 CG CD CE NZ REMARK 470 GLU C 415 CG CD OE1 OE2 REMARK 470 THR C 494 OG1 CG2 REMARK 470 GLU C 495 CG CD OE1 OE2 REMARK 470 ILE C 496 CG1 CG2 CD1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR B 392 CD1 REMARK 480 ASN C 296 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 3 12.67 -140.81 REMARK 500 LEU B 88 -154.46 -110.69 REMARK 500 ASP B 146 78.19 -151.12 REMARK 500 ASP B 191 -120.15 60.40 REMARK 500 GLN B 197 50.40 -98.47 REMARK 500 VAL B 200 31.95 -74.69 REMARK 500 TYR B 210 -75.88 -122.38 REMARK 500 GLU B 212 -21.62 69.99 REMARK 500 ASP B 252 96.74 -166.91 REMARK 500 ASN B 281 36.33 -78.93 REMARK 500 MET B 287 -162.76 -110.74 REMARK 500 LYS B 289 -25.15 -150.72 REMARK 500 LEU B 300 161.38 65.92 REMARK 500 LYS B 315 -107.42 45.24 REMARK 500 ILE B 348 -38.47 -147.30 REMARK 500 HIS B 358 -71.26 -178.45 REMARK 500 TRP B 369 -162.99 -129.77 REMARK 500 GLN B 388 -109.65 172.05 REMARK 500 SER B 415 -166.33 -125.38 REMARK 500 GLU B 421 97.10 -67.11 REMARK 500 LEU B 430 84.88 -66.46 REMARK 500 PHE C 14 -146.36 -115.97 REMARK 500 HIS C 67 -70.60 -72.90 REMARK 500 TRP C 86 68.45 -114.75 REMARK 500 ASN C 90 70.31 -109.54 REMARK 500 PHE C 106 50.12 -112.69 REMARK 500 ASN C 131 -72.30 -54.88 REMARK 500 GLU C 133 168.65 65.12 REMARK 500 CYS C 151 46.59 -104.02 REMARK 500 THR C 181 -169.04 -111.63 REMARK 500 ALA C 204 37.90 -82.80 REMARK 500 THR C 218 72.92 52.72 REMARK 500 LEU C 305 -103.18 -115.58 REMARK 500 PRO C 319 44.85 -83.53 REMARK 500 PRO C 378 -85.83 -44.94 REMARK 500 LYS C 379 -62.21 177.04 REMARK 500 ASN C 380 38.40 -84.41 REMARK 500 LYS C 390 -35.08 68.72 REMARK 500 GLU C 436 -144.54 61.62 REMARK 500 GLU C 495 56.28 -168.68 REMARK 500 THR C 498 135.46 -37.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 635 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 636 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 637 DISTANCE = 6.89 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PRO B 501 REMARK 610 PRO B 502 REMARK 610 PRO B 503 REMARK 610 PRO B 504 REMARK 610 PRO B 505 REMARK 610 PRO C 603 REMARK 610 PRO C 604 DBREF1 8U7B B 1 450 UNP A0A1I7NFG5_9BACT DBREF2 8U7B B A0A1I7NFG5 1 450 DBREF1 8U7B C 1 507 UNP A0A1I7NFD7_9BACT DBREF2 8U7B C A0A1I7NFD7 1 507 SEQRES 1 B 449 MET ARG ASN LYS ILE PHE ILE SER HIS ALA THR PRO GLU SEQRES 2 B 449 ASP ASP ASP PHE THR ARG TRP LEU SER LEU LYS LEU ILE SEQRES 3 B 449 GLY LEU GLY TYR GLU VAL TRP CYS ASP ILE LEU PHE LEU SEQRES 4 B 449 ASP LYS GLY VAL ASP PHE TRP SER THR ILE GLU LYS GLU SEQRES 5 B 449 ILE ARG GLU ASN THR CYS LYS PHE LEU ILE VAL SER SER SEQRES 6 B 449 THR ALA GLY ASN LYS ARG GLU GLY VAL LEU LYS GLU LEU SEQRES 7 B 449 ALA VAL ALA THR LYS VAL LYS LYS HIS LEU GLN ASP ASP SEQRES 8 B 449 MET PHE ILE ILE PRO LEU ALA ILE ASP GLU ASN LEU SER SEQRES 9 B 449 TYR ASP ASP ILE ASN ILE GLU ILE VAL ARG LEU ASN ALA SEQRES 10 B 449 ILE ASP PHE LYS LYS SER TRP ALA LYS GLY LEU GLN ASP SEQRES 11 B 449 LEU LEU ASP ALA PHE GLU LYS GLN ASN VAL PRO LYS LYS SEQRES 12 B 449 PRO PRO ASP HIS SER LYS SER ASN LEU LEU TYR GLN GLN SEQRES 13 B 449 ILE PHE LEU HIS ASP LYS GLN ALA ILE GLU LYS GLU GLU SEQRES 14 B 449 THR TYR ASP SER ASN TRP PHE PRO ILE ILE SER PHE PRO SEQRES 15 B 449 ASN GLU LEU ARG PHE HIS ARG TYR ASP TRP ARG LEU PRO SEQRES 16 B 449 LYS GLN PHE ASP VAL ARG THR LEU ALA PHE PRO ALA ILE SEQRES 17 B 449 ARG TYR LYS GLU TYR LEU CYS THR PHE ALA TRP GLU TYR SEQRES 18 B 449 ASP PHE ILE HIS GLN LEU PRO LYS THR GLU THR TYR ASN SEQRES 19 B 449 GLY GLN GLU SER ILE ARG ILE SER THR SER ASP ILE LEU SEQRES 20 B 449 SER GLY ARG TYR ASP THR ASP PHE ILE ARG ASN TYR GLU SEQRES 21 B 449 CYS GLN ARG LEU ILE VAL GLN LEU ILE ASN LYS ALA PHE SEQRES 22 B 449 GLU LEU ARG MET LYS ASP LYS ASN VAL ARG GLU TYR GLN SEQRES 23 B 449 MET SER LYS THR PHE ALA TYR TRP ILE GLU LYS GLY LYS SEQRES 24 B 449 LEU GLU LYS ASP LYS PHE GLU LYS ILE LYS LEU VAL GLY SEQRES 25 B 449 LYS GLN LYS ASN LYS TYR TRP HIS PHE GLY ILE SER ALA SEQRES 26 B 449 ALA GLY LYS LEU TYR PRO SER PRO VAL LEU MET VAL SER SEQRES 27 B 449 SER HIS ILE ILE PHE THR MET ASP GLY ILE ASN LEU ILE SEQRES 28 B 449 LYS SER LYS SER ILE GLN HIS SER SER ARG ARG LYS GLN SEQRES 29 B 449 GLY LYS ASN TRP TRP ASN ASP LYS TRP ARG GLU LYS LEU SEQRES 30 B 449 LEU ALA PHE ILE ARG PHE LEU SER ASP GLN ASN ALA ILE SEQRES 31 B 449 TYR LEU ASN VAL GLY SER GLU GLU LYS ILE LEU ILE SER SEQRES 32 B 449 ASN LYS PRO LEU LYS PHE PHE GLY LYS MET SER TYR VAL SEQRES 33 B 449 THR PRO SER GLU VAL THR LEU GLU GLU GLU SER VAL LEU SEQRES 34 B 449 ALA ASP ILE ASN ASN PHE GLU GLU ASP THR GLU ASP LEU SEQRES 35 B 449 ASP GLU LEU GLU ASP ILE GLU SEQRES 1 C 507 MET LYS GLU LEU ILE TYR ILE GLU GLU PRO SER ILE LEU SEQRES 2 C 507 PHE ALA HIS GLY GLN LYS CYS THR ASP PRO ARG ASP GLY SEQRES 3 C 507 LEU ALA LEU PHE GLY PRO LEU ASN GLN ILE TYR GLY ILE SEQRES 4 C 507 LYS SER GLY VAL VAL GLY THR GLN LYS GLY LEU GLN ILE SEQRES 5 C 507 PHE LYS SER TYR LEU ASP LYS ILE GLN LYS PRO ILE TYR SEQRES 6 C 507 ASN HIS ASN ASN ILE THR ARG PRO MET PHE PRO GLY PHE SEQRES 7 C 507 GLU ALA VAL PHE GLY CYS LYS TRP GLU SER GLN ASN ILE SEQRES 8 C 507 VAL PHE LYS GLU ILE THR ASP GLU GLU ILE ARG ARG TYR SEQRES 9 C 507 LEU PHE ASN ALA SER THR HIS LYS ARG THR TYR ASP LEU SEQRES 10 C 507 VAL THR LEU PHE ASN ASP LYS ILE ILE THR ALA ASN LYS SEQRES 11 C 507 ASN ASP GLU GLU ARG VAL ASP VAL TRP PHE VAL ILE VAL SEQRES 12 C 507 PRO GLU GLU ILE TYR LYS TYR CYS ARG PRO ASN SER VAL SEQRES 13 C 507 LEU PRO ASN GLU LEU VAL GLN THR LYS SER LEU ILE SER SEQRES 14 C 507 LYS SER LYS ALA LYS SER PHE ARG TYR THR PRO THR LEU SEQRES 15 C 507 PHE GLU GLU PHE ASN LYS LYS LEU LYS GLU VAL GLU LYS SEQRES 16 C 507 GLU ALA LYS THR TYR ASN TYR ASP ALA GLN PHE HIS ASP SEQRES 17 C 507 GLN LEU LYS ALA ARG LEU LEU GLU HIS THR ILE PRO THR SEQRES 18 C 507 GLN ILE LEU ARG GLU SER THR LEU ALA TRP ARG ASP PHE SEQRES 19 C 507 LYS ASN THR PHE GLY ALA PRO ILE ARG ASP PHE SER LYS SEQRES 20 C 507 ILE GLU GLY HIS LEU ALA TRP THR ILE SER THR ALA ALA SEQRES 21 C 507 TYR TYR LYS ALA GLY GLY LYS PRO TRP LYS LEU GLY ASP SEQRES 22 C 507 ILE ARG PRO GLY VAL CYS TYR LEU GLY LEU VAL TYR LYS SEQRES 23 C 507 LYS ILE GLU LYS SER LYS ASN PRO GLN ASN ALA CYS CYS SEQRES 24 C 507 ALA ALA GLN MET PHE LEU ASP ASN GLY ASP GLY THR VAL SEQRES 25 C 507 PHE LYS GLY GLU VAL GLY PRO TRP TYR ASN PRO GLU LYS SEQRES 26 C 507 GLY GLU TYR HIS LEU LYS PRO LYS GLU ALA LYS ALA LEU SEQRES 27 C 507 LEU THR GLN ALA LEU GLU SER TYR LYS GLU GLN ASN LYS SEQRES 28 C 507 SER TYR PRO LYS GLU VAL PHE ILE HIS ALA ARG THR ARG SEQRES 29 C 507 PHE ASN ASP GLU GLU TRP ASN ALA PHE ASN GLU VAL THR SEQRES 30 C 507 PRO LYS ASN THR ASN LEU VAL GLY VAL THR ILE THR LYS SEQRES 31 C 507 SER LYS PRO LEU LYS LEU TYR LYS THR GLU GLY ALA PHE SEQRES 32 C 507 PRO ILE MET ARG GLY ASN ALA TYR ILE VAL ASP GLU LYS SEQRES 33 C 507 LYS ALA PHE LEU TRP THR LEU GLY PHE VAL PRO LYS LEU SEQRES 34 C 507 GLN SER THR LEU SER MET GLU VAL PRO ASN PRO ILE PHE SEQRES 35 C 507 ILE GLU ILE ASN LYS GLY GLU ALA GLU ILE GLN GLN VAL SEQRES 36 C 507 LEU LYS ASP ILE LEU ALA LEU THR LYS LEU ASN TYR ASN SEQRES 37 C 507 ALA CYS ILE TYR ALA ASP GLY GLU PRO VAL THR LEU ARG SEQRES 38 C 507 PHE ALA ASN LYS ILE GLY GLU ILE LEU THR ALA SER THR SEQRES 39 C 507 GLU ILE LYS THR PRO PRO LEU ALA PHE LYS TYR TYR ILE HET PRO B 501 7 HET PRO B 502 7 HET PRO B 503 7 HET PRO B 504 7 HET PRO B 505 7 HET MN C 601 1 HET MN C 602 1 HET PRO C 603 7 HET PRO C 604 7 HETNAM PRO PROLINE HETNAM MN MANGANESE (II) ION FORMUL 3 PRO 7(C5 H9 N O2) FORMUL 8 MN 2(MN 2+) FORMUL 12 HOH *91(H2 O) HELIX 1 AA1 ASP B 14 GLY B 29 1 16 HELIX 2 AA2 CYS B 34 PHE B 38 5 5 HELIX 3 AA3 TRP B 46 ASN B 56 1 11 HELIX 4 AA4 ARG B 71 LEU B 88 1 18 HELIX 5 AA5 SER B 104 ILE B 108 5 5 HELIX 6 AA6 ASN B 109 ARG B 114 1 6 HELIX 7 AA7 SER B 123 GLN B 138 1 16 HELIX 8 AA8 ASP B 146 ILE B 157 1 12 HELIX 9 AA9 TYR B 190 LEU B 194 5 5 HELIX 10 AB1 LEU B 227 TYR B 233 5 7 HELIX 11 AB2 ASN B 234 SER B 238 5 5 HELIX 12 AB3 THR B 243 SER B 248 1 6 HELIX 13 AB4 ARG B 257 ASP B 279 1 23 HELIX 14 AB5 LEU B 300 LYS B 304 5 5 HELIX 15 AB6 SER B 355 LYS B 366 1 12 HELIX 16 AB7 TRP B 369 LEU B 384 1 16 HELIX 17 AB8 THR B 423 LEU B 430 1 8 HELIX 18 AB9 ALA C 15 GLY C 17 5 3 HELIX 19 AC1 ASP C 22 PHE C 30 1 9 HELIX 20 AC2 THR C 46 ILE C 60 1 15 HELIX 21 AC3 PHE C 78 GLY C 83 1 6 HELIX 22 AC4 THR C 97 PHE C 106 1 10 HELIX 23 AC5 SER C 109 ASN C 131 1 23 HELIX 24 AC6 PRO C 144 CYS C 151 1 8 HELIX 25 AC7 PRO C 158 VAL C 162 5 5 HELIX 26 AC8 SER C 169 LYS C 174 1 6 HELIX 27 AC9 PHE C 183 LYS C 198 1 16 HELIX 28 AD1 THR C 199 TYR C 202 5 4 HELIX 29 AD2 GLN C 205 LEU C 214 1 10 HELIX 30 AD3 LEU C 215 THR C 218 5 4 HELIX 31 AD4 GLU C 226 ALA C 230 1 5 HELIX 32 AD5 TRP C 231 PHE C 234 5 4 HELIX 33 AD6 ILE C 248 ALA C 264 1 17 HELIX 34 AD7 LYS C 331 LYS C 351 1 21 HELIX 35 AD8 ASN C 366 THR C 377 1 12 HELIX 36 AD9 GLU C 451 THR C 463 1 13 HELIX 37 AE1 PRO C 477 PHE C 482 1 6 HELIX 38 AE2 PHE C 482 THR C 494 1 13 HELIX 39 AE3 LYS C 504 TYR C 506 5 3 SHEET 1 AA1 5 VAL B 32 TRP B 33 0 SHEET 2 AA1 5 LYS B 4 SER B 8 1 N ILE B 5 O TRP B 33 SHEET 3 AA1 5 THR B 57 SER B 64 1 O CYS B 58 N LYS B 4 SHEET 4 AA1 5 ILE B 94 ALA B 98 1 O LEU B 97 N ILE B 62 SHEET 5 AA1 5 ILE B 118 ASP B 119 1 O ILE B 118 N PRO B 96 SHEET 1 AA2 4 LYS C 2 GLU C 3 0 SHEET 2 AA2 4 LYS B 409 GLY B 412 1 N PHE B 411 O LYS C 2 SHEET 3 AA2 4 GLU B 169 SER B 173 -1 N TYR B 171 O PHE B 410 SHEET 4 AA2 4 LEU C 396 LYS C 398 -1 O TYR C 397 N ASP B 172 SHEET 1 AA3 4 TRP B 175 PRO B 177 0 SHEET 2 AA3 4 VAL B 334 THR B 344 -1 O LEU B 335 N PHE B 176 SHEET 3 AA3 4 LYS B 317 LYS B 328 -1 N LYS B 328 O VAL B 334 SHEET 4 AA3 4 VAL B 311 GLN B 314 -1 N GLN B 314 O LYS B 317 SHEET 1 AA4 4 ALA B 207 ARG B 209 0 SHEET 2 AA4 4 LEU B 214 THR B 216 -1 O CYS B 215 N ILE B 208 SHEET 3 AA4 4 GLU B 184 HIS B 188 -1 N ARG B 186 O THR B 216 SHEET 4 AA4 4 ILE B 239 SER B 242 -1 O ILE B 241 N LEU B 185 SHEET 1 AA5 2 ARG B 283 GLN B 286 0 SHEET 2 AA5 2 PHE B 291 TRP B 294 -1 O ALA B 292 N TYR B 285 SHEET 1 AA6 2 ALA B 390 ASN B 394 0 SHEET 2 AA6 2 LYS B 400 SER B 404 -1 O ILE B 401 N LEU B 393 SHEET 1 AA710 ILE C 5 TYR C 6 0 SHEET 2 AA710 ASN C 409 ILE C 412 -1 O ALA C 410 N ILE C 5 SHEET 3 AA710 LYS C 417 LEU C 420 -1 O PHE C 419 N TYR C 411 SHEET 4 AA710 ILE C 441 LYS C 447 -1 O ILE C 443 N ALA C 418 SHEET 5 AA710 ASN C 382 ILE C 388 -1 N THR C 387 O GLU C 444 SHEET 6 AA710 GLU C 356 ALA C 361 1 N VAL C 357 O ASN C 382 SHEET 7 AA710 VAL C 278 LYS C 287 1 N LEU C 281 O HIS C 360 SHEET 8 AA710 ALA C 297 PHE C 304 -1 O CYS C 298 N LYS C 286 SHEET 9 AA710 THR C 311 GLY C 318 -1 O PHE C 313 N ALA C 301 SHEET 10 AA710 LEU C 501 ALA C 502 -1 O LEU C 501 N VAL C 312 SHEET 1 AA8 3 LYS C 19 CYS C 20 0 SHEET 2 AA8 3 ILE C 12 LEU C 13 -1 N ILE C 12 O CYS C 20 SHEET 3 AA8 3 LYS C 270 LEU C 271 -1 O LYS C 270 N LEU C 13 SHEET 1 AA9 4 ILE C 91 GLU C 95 0 SHEET 2 AA9 4 SER C 41 GLY C 45 1 N VAL C 43 O LYS C 94 SHEET 3 AA9 4 VAL C 138 VAL C 143 1 O PHE C 140 N GLY C 42 SHEET 4 AA9 4 THR C 221 ARG C 225 1 O LEU C 224 N VAL C 143 SHEET 1 AB1 2 TYR C 321 ASN C 322 0 SHEET 2 AB1 2 GLU C 327 TYR C 328 -1 N GLU C 327 O ASN C 322 SHEET 1 AB2 2 PHE C 425 VAL C 426 0 SHEET 2 AB2 2 SER C 431 THR C 432 -1 O SER C 431 N VAL C 426 LINK NZ LYS C 211 MN MN C 602 1555 1555 2.50 CISPEP 1 THR B 11 PRO B 12 0 0.16 CISPEP 2 TYR B 330 PRO B 331 0 3.73 CRYST1 197.181 197.181 183.407 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005071 0.002928 0.000000 0.00000 SCALE2 0.000000 0.005856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005452 0.00000