HEADER LUMINESCENT PROTEIN 22-SEP-23 8UB6 TITLE CRYSTAL STRUCTURE OF A RECONSTRUCTED KAEDE-TYPE RED FLUORESCENT TITLE 2 PROTEIN, LEA H62X, CONTAINING 3-METHYLHISTIDINE AT POSITION 62 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.N.HENDERSON,J.H.MILLS REVDAT 4 18-MAR-26 8UB6 1 REMARK REVDAT 3 10-JAN-24 8UB6 1 JRNL REVDAT 2 13-DEC-23 8UB6 1 JRNL REVDAT 1 29-NOV-23 8UB6 0 JRNL AUTH T.D.KRUEGER,J.N.HENDERSON,I.L.BREEN,L.ZHU,R.M.WACHTER, JRNL AUTH 2 J.H.MILLS,C.FANG JRNL TITL CAPTURING EXCITED-STATE STRUCTURAL SNAPSHOTS OF EVOLUTIONARY JRNL TITL 2 GREEN-TO-RED PHOTOCHROMIC FLUORESCENT PROTEINS. JRNL REF FRONT CHEM V. 11 28081 2023 JRNL REFN ESSN 2296-2646 JRNL PMID 38144887 JRNL DOI 10.3389/FCHEM.2023.1328081 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.5070 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.5270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1747 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1542 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2370 ; 1.497 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3550 ; 1.307 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 7.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;31.396 ;22.527 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;13.114 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.218 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 219 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2013 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 857 ; 0.969 ; 2.516 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 856 ; 0.969 ; 2.515 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1068 ; 1.409 ; 3.766 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1069 ; 1.408 ; 3.767 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 890 ; 1.196 ; 2.649 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 891 ; 1.195 ; 2.650 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1303 ; 1.856 ; 3.926 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1807 ; 4.608 ;29.160 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1795 ; 4.583 ;28.913 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3438 12.4257 14.1009 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.1164 REMARK 3 T33: 0.2123 T12: 0.0197 REMARK 3 T13: -0.0059 T23: 0.0818 REMARK 3 L TENSOR REMARK 3 L11: 4.5547 L22: 2.6762 REMARK 3 L33: 12.1473 L12: 0.5473 REMARK 3 L13: -5.2849 L23: -1.6354 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.1794 S13: -0.3411 REMARK 3 S21: 0.3561 S22: 0.1687 S23: 0.0310 REMARK 3 S31: 0.6073 S32: -0.1269 S33: -0.1688 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4494 19.0579 27.7632 REMARK 3 T TENSOR REMARK 3 T11: 0.3694 T22: 0.1704 REMARK 3 T33: 0.1890 T12: -0.0108 REMARK 3 T13: -0.0510 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 10.2100 L22: 0.9467 REMARK 3 L33: 6.2161 L12: -2.6919 REMARK 3 L13: -6.4683 L23: 1.6523 REMARK 3 S TENSOR REMARK 3 S11: 0.1428 S12: -0.0038 S13: -0.3897 REMARK 3 S21: 0.2168 S22: -0.0501 S23: 0.0125 REMARK 3 S31: 0.0163 S32: -0.1347 S33: -0.0928 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5814 20.6904 16.8378 REMARK 3 T TENSOR REMARK 3 T11: 0.3163 T22: 0.1443 REMARK 3 T33: 0.0700 T12: 0.0588 REMARK 3 T13: 0.0017 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 2.9633 L22: 2.9617 REMARK 3 L33: 3.4446 L12: 0.5751 REMARK 3 L13: -1.8775 L23: -0.1548 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.1532 S13: -0.2238 REMARK 3 S21: 0.8107 S22: 0.1343 S23: 0.0147 REMARK 3 S31: 0.1801 S32: -0.1107 S33: -0.1271 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6058 23.7860 10.1052 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1129 REMARK 3 T33: 0.0816 T12: 0.0270 REMARK 3 T13: 0.0740 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 3.1213 L22: 4.1978 REMARK 3 L33: 4.2900 L12: 0.6085 REMARK 3 L13: -0.8881 L23: 0.2291 REMARK 3 S TENSOR REMARK 3 S11: -0.2887 S12: -0.0780 S13: -0.3618 REMARK 3 S21: 0.4367 S22: 0.2428 S23: 0.3041 REMARK 3 S31: 0.4460 S32: -0.3680 S33: 0.0459 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6217 16.0088 10.6924 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.0830 REMARK 3 T33: 0.1535 T12: 0.0129 REMARK 3 T13: 0.0302 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 5.2719 L22: 4.8728 REMARK 3 L33: 8.1559 L12: 2.9606 REMARK 3 L13: -4.6840 L23: -3.8181 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: -0.1495 S13: -0.3755 REMARK 3 S21: 0.2901 S22: 0.1830 S23: 0.3037 REMARK 3 S31: 0.5813 S32: -0.1702 S33: -0.1102 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4487 29.1294 10.4165 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.2420 REMARK 3 T33: 0.1969 T12: 0.1113 REMARK 3 T13: -0.0764 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 5.5143 L22: 8.1912 REMARK 3 L33: 4.4133 L12: -3.6575 REMARK 3 L13: 0.7842 L23: -1.2161 REMARK 3 S TENSOR REMARK 3 S11: -0.6021 S12: -0.0303 S13: -0.1669 REMARK 3 S21: 1.0031 S22: 0.3414 S23: -0.9226 REMARK 3 S31: 0.2578 S32: 0.8603 S33: 0.2607 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4022 32.2514 12.7013 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.1472 REMARK 3 T33: 0.0397 T12: 0.0357 REMARK 3 T13: 0.0450 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 13.4537 L22: 3.8063 REMARK 3 L33: 1.0499 L12: -1.3296 REMARK 3 L13: -0.3528 L23: -0.2407 REMARK 3 S TENSOR REMARK 3 S11: -0.1041 S12: 0.2666 S13: -0.1564 REMARK 3 S21: 0.4482 S22: 0.0747 S23: 0.3681 REMARK 3 S31: 0.1359 S32: -0.1135 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4407 29.3331 12.7289 REMARK 3 T TENSOR REMARK 3 T11: 0.1430 T22: 0.1081 REMARK 3 T33: 0.0326 T12: 0.0596 REMARK 3 T13: 0.0540 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 3.3354 L22: 4.9181 REMARK 3 L33: 3.2846 L12: 0.4502 REMARK 3 L13: -1.2912 L23: -0.1223 REMARK 3 S TENSOR REMARK 3 S11: -0.2660 S12: -0.0515 S13: 0.0030 REMARK 3 S21: 0.4656 S22: 0.2488 S23: 0.3563 REMARK 3 S31: 0.1970 S32: -0.3407 S33: 0.0172 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8045 25.9459 20.3037 REMARK 3 T TENSOR REMARK 3 T11: 0.4331 T22: 0.1149 REMARK 3 T33: 0.1677 T12: 0.0463 REMARK 3 T13: -0.1346 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 13.1506 L22: 6.9134 REMARK 3 L33: 1.8818 L12: -7.7944 REMARK 3 L13: 0.6003 L23: -0.2982 REMARK 3 S TENSOR REMARK 3 S11: -0.4227 S12: -0.6278 S13: 0.1514 REMARK 3 S21: 1.1455 S22: 0.3695 S23: -0.5822 REMARK 3 S31: 0.0608 S32: 0.0636 S33: 0.0532 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2282 24.3915 22.5336 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.1798 REMARK 3 T33: 0.1042 T12: 0.0519 REMARK 3 T13: -0.0405 T23: 0.0865 REMARK 3 L TENSOR REMARK 3 L11: 9.1167 L22: 7.4663 REMARK 3 L33: 1.8445 L12: -6.8747 REMARK 3 L13: -2.9031 L23: 2.2574 REMARK 3 S TENSOR REMARK 3 S11: -0.2390 S12: -0.5027 S13: -0.3338 REMARK 3 S21: 0.9605 S22: 0.1808 S23: -0.0589 REMARK 3 S31: 0.0804 S32: 0.1060 S33: 0.0582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8UB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000277741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 3.98700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 RATIO OF WELL SOLUTION (25% PEG + REMARK 280 0.2 M MGCL2) AND PROTEIN SOLUTION (LEA H62X AT 15 MG/ML IN 10 MM REMARK 280 HEPES PH 7.5 + 75 MM NACL)., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.38900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.36650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.03500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.38900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.36650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.03500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.38900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.36650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.03500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.38900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.36650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.73300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 76.73300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 366 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 370 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 SER A 4 REMARK 465 PRO A 220 REMARK 465 ARG A 221 REMARK 465 GLN A 222 REMARK 465 ALA A 223 REMARK 465 LYS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CE NZ REMARK 470 LYS A 11 CD CE NZ REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 34 CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 47 CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 138 CE NZ REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8THS RELATED DB: PDB DBREF 8UB6 A 3 230 PDB 8UB6 8UB6 3 230 SEQRES 1 A 228 MET SER VAL ILE LYS SER ASP MET LYS ILE LYS LEU ARG SEQRES 2 A 228 MET GLU GLY THR VAL ASN GLY HIS LYS PHE VAL ILE GLU SEQRES 3 A 228 GLY GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 4 A 228 MET ASN LEU LYS VAL LYS GLU GLY ALA PRO LEU PRO PHE SEQRES 5 A 228 ALA TYR ASP ILE LEU THR THR VAL PHE X1B ASN ARG VAL SEQRES 6 A 228 PHE ALA LYS TYR PRO LYS HIS ILE PRO ASP TYR PHE LYS SEQRES 7 A 228 GLN SER PHE PRO GLU GLY TYR SER TRP GLU ARG SER MET SEQRES 8 A 228 THR PHE GLU ASP GLY GLY ILE CYS THR ALA ARG ASN ASP SEQRES 9 A 228 ILE THR LEU GLU GLY ASP CYS PHE PHE ASN GLU ILE ARG SEQRES 10 A 228 PHE ASP GLY VAL ASN PHE PRO PRO ASN GLY PRO VAL MET SEQRES 11 A 228 GLN LYS LYS THR LEU LYS TRP GLU PRO SER THR GLU LYS SEQRES 12 A 228 MET TYR VAL ARG ASP GLY VAL LEU THR GLY ASP ILE ASN SEQRES 13 A 228 MET ALA LEU LEU LEU GLU GLY GLY GLY HIS TYR ARG CYS SEQRES 14 A 228 ASP PHE LYS THR THR TYR LYS ALA LYS LYS GLY VAL GLN SEQRES 15 A 228 LEU PRO ASP TYR HIS PHE VAL ASP HIS CME ILE GLU ILE SEQRES 16 A 228 LEU SER HIS ASP LYS ASP TYR ASN ASN VAL LYS LEU TYR SEQRES 17 A 228 GLU HIS ALA VAL ALA HIS SER GLY LEU PRO ARG GLN ALA SEQRES 18 A 228 LYS HIS HIS HIS HIS HIS HIS HET X1B A 64 26 HET CME A 194 10 HETNAM X1B {(4Z)-2-[(1S)-1-AMINO-2-(1-METHYL-1H-IMIDAZOL-5-YL) HETNAM 2 X1B ETHYL]-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5- HETNAM 3 X1B DIHYDRO-1H-IMIDAZOL-1-YL}ACETALDEHYDE HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETSYN X1B CHROMOPHORE (N1-METHYLATED HIS-TYR-GLY) FORMUL 1 X1B C18 H19 N5 O4 FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 HOH *82(H2 O) HELIX 1 AA1 TYR A 56 THR A 61 1 6 HELIX 2 AA2 ASP A 77 SER A 82 1 6 SHEET 1 AA113 THR A 136 TRP A 139 0 SHEET 2 AA113 VAL A 152 LEU A 163 -1 O LEU A 162 N LEU A 137 SHEET 3 AA113 HIS A 168 ALA A 179 -1 O TYR A 177 N LEU A 153 SHEET 4 AA113 TYR A 87 PHE A 95 -1 N THR A 94 O ASP A 172 SHEET 5 AA113 ILE A 100 GLU A 110 -1 O ALA A 103 N ARG A 91 SHEET 6 AA113 CYS A 113 VAL A 123 -1 O VAL A 123 N ILE A 100 SHEET 7 AA113 MET A 10 VAL A 20 1 N LYS A 13 O PHE A 114 SHEET 8 AA113 HIS A 23 LYS A 34 -1 O ILE A 27 N MET A 16 SHEET 9 AA113 THR A 39 GLU A 48 -1 O LYS A 47 N VAL A 26 SHEET 10 AA113 ASN A 206 HIS A 216 -1 O LEU A 209 N MET A 42 SHEET 11 AA113 HIS A 189 HIS A 200 -1 N ASP A 192 O VAL A 214 SHEET 12 AA113 SER A 142 ARG A 149 -1 N GLU A 144 O VAL A 191 SHEET 13 AA113 VAL A 152 LEU A 163 -1 O THR A 154 N TYR A 147 LINK C PHE A 63 N1 X1B A 64 1555 1555 1.34 LINK C3 X1B A 64 N ASN A 65 1555 1555 1.34 LINK C HIS A 193 N CME A 194 1555 1555 1.34 LINK C CME A 194 N ILE A 195 1555 1555 1.33 CISPEP 1 ALA A 50 PRO A 51 0 -7.03 CISPEP 2 PHE A 83 PRO A 84 0 6.95 CRYST1 46.778 76.733 120.070 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008328 0.00000 CONECT 432 464 CONECT 441 455 456 CONECT 442 443 455 CONECT 443 442 444 CONECT 444 443 445 456 CONECT 445 444 446 CONECT 446 445 448 460 CONECT 447 458 462 CONECT 448 446 459 463 CONECT 449 450 459 460 CONECT 450 449 461 464 CONECT 451 459 465 CONECT 452 454 461 462 CONECT 453 462 CONECT 454 452 458 CONECT 455 441 442 457 CONECT 456 441 444 CONECT 457 455 CONECT 458 447 454 CONECT 459 448 449 451 CONECT 460 446 449 CONECT 461 450 452 CONECT 462 447 452 453 CONECT 463 448 CONECT 464 432 450 CONECT 465 451 466 467 CONECT 466 465 CONECT 467 465 CONECT 1487 1495 CONECT 1495 1487 1496 CONECT 1496 1495 1497 1503 CONECT 1497 1496 1498 CONECT 1498 1497 1499 CONECT 1499 1498 1500 CONECT 1500 1499 1501 CONECT 1501 1500 1502 CONECT 1502 1501 CONECT 1503 1496 1504 1505 CONECT 1504 1503 CONECT 1505 1503 MASTER 499 0 2 2 13 0 0 6 1780 1 40 18 END