HEADER CELL CYCLE 27-SEP-23 8UCT TITLE CRYSTAL STRUCTURE OF TCPINK1 IN COMPLEX WITH PRT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PINK1, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRIBOLIUM CASTANEUM; SOURCE 3 ORGANISM_COMMON: RED FLOUR BEETLE; SOURCE 4 ORGANISM_TAXID: 7070; SOURCE 5 GENE: PINK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS MITOPHAGY AUTOPHAGY KINASE, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.VEYRON,S.RASOOL,J.F.TREMPE REVDAT 1 08-MAY-24 8UCT 0 JRNL AUTH T.SHOMALI,S.RASOOL,N.CROTEAU,S.VEYRON,L.TRUONG,J.F.TREMPE JRNL TITL CHARACTERIZATION OF A NEW FAMILY OF PINK1 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 10839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 90.9300 - 4.6600 1.00 2838 164 0.2577 0.2780 REMARK 3 2 4.6600 - 3.7000 1.00 2612 124 0.2559 0.2830 REMARK 3 3 3.7000 - 3.2300 1.00 2535 143 0.3383 0.3902 REMARK 3 4 3.2300 - 2.9300 0.93 2308 115 0.3919 0.3725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.453 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.037 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3092 REMARK 3 ANGLE : 0.776 4217 REMARK 3 CHIRALITY : 0.042 489 REMARK 3 PLANARITY : 0.013 547 REMARK 3 DIHEDRAL : 16.620 1123 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000272208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 90.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, PEG 4000, 150MM AMMONIUM REMARK 280 SULFATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 181.86000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 363.72000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 272.79000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 454.65000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.93000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 181.86000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 363.72000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 454.65000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 272.79000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -90.93000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 116 REMARK 465 PRO A 117 REMARK 465 LEU A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 THR A 121 REMARK 465 ASP A 184 REMARK 465 GLU A 185 REMARK 465 THR A 186 REMARK 465 ASP A 187 REMARK 465 SER A 226 REMARK 465 ASN A 227 REMARK 465 HIS A 228 REMARK 465 ASP A 229 REMARK 465 LEU A 230 REMARK 465 ASN A 231 REMARK 465 ASN A 232 REMARK 465 LEU A 260 REMARK 465 ILE A 261 REMARK 465 GLN A 262 REMARK 465 GLU A 263 REMARK 465 LEU A 264 REMARK 465 GLU A 265 REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 LYS A 268 REMARK 465 ASP A 269 REMARK 465 LEU A 270 REMARK 465 TYR A 271 REMARK 465 PRO A 272 REMARK 465 ALA A 273 REMARK 465 ALA A 274 REMARK 465 LEU A 275 REMARK 465 PRO A 276 REMARK 465 PRO A 277 REMARK 465 ARG A 278 REMARK 465 LEU A 279 REMARK 465 HIS A 280 REMARK 465 PRO A 281 REMARK 465 GLU A 282 REMARK 465 GLY A 283 REMARK 465 GLU A 284 REMARK 465 GLY A 285 REMARK 465 LYS A 519 REMARK 465 ILE A 520 REMARK 465 ASN A 521 REMARK 465 ASN A 522 REMARK 465 LYS A 523 REMARK 465 SER A 524 REMARK 465 PHE A 525 REMARK 465 GLY A 526 REMARK 465 GLU A 527 REMARK 465 LYS A 528 REMARK 465 PHE A 529 REMARK 465 THR A 530 REMARK 465 ARG A 531 REMARK 465 ASN A 532 REMARK 465 TRP A 533 REMARK 465 ARG A 534 REMARK 465 ARG A 535 REMARK 465 PRO A 567 REMARK 465 GLU A 568 REMARK 465 LEU A 569 REMARK 465 ASP A 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 TYR A 224 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 237 CG CD1 CD2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 MET A 288 CG SD CE REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 156 HH22 ARG A 433 1445 1.25 REMARK 500 OG SER A 205 HZ3 LYS A 339 10554 1.48 REMARK 500 OH TYR A 191 ND2 ASN A 468 1455 2.02 REMARK 500 O PRO A 156 NH2 ARG A 433 1445 2.09 REMARK 500 OD1 ASP A 381 OD1 ASP A 381 10554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 433 CG ARG A 433 CD 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 172 -174.19 -67.51 REMARK 500 GLU A 234 -112.75 35.98 REMARK 500 LEU A 237 100.50 -54.86 REMARK 500 ALA A 238 -72.76 174.24 REMARK 500 ALA A 252 79.24 -103.09 REMARK 500 ARG A 336 -7.29 76.55 REMARK 500 GLU A 349 74.54 78.87 REMARK 500 SER A 358 -71.46 -106.46 REMARK 500 PHE A 422 36.08 -90.40 REMARK 500 ARG A 433 -157.88 -116.92 REMARK 500 LEU A 463 33.98 -96.83 REMARK 500 LYS A 496 169.44 66.06 REMARK 500 CYS A 516 11.60 57.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 433 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 723 DISTANCE = 7.05 ANGSTROMS DBREF 8UCT A 121 570 UNP D6WMX4 PINK1_TRICA 121 570 SEQADV 8UCT GLY A 116 UNP D6WMX4 EXPRESSION TAG SEQADV 8UCT PRO A 117 UNP D6WMX4 EXPRESSION TAG SEQADV 8UCT LEU A 118 UNP D6WMX4 EXPRESSION TAG SEQADV 8UCT GLY A 119 UNP D6WMX4 EXPRESSION TAG SEQADV 8UCT SER A 120 UNP D6WMX4 EXPRESSION TAG SEQADV 8UCT ALA A 131 UNP D6WMX4 TRP 131 ENGINEERED MUTATION SEQADV 8UCT ALA A 142 UNP D6WMX4 TRP 142 ENGINEERED MUTATION SEQADV 8UCT ALA A 225 UNP D6WMX4 TYR 225 ENGINEERED MUTATION SEQADV 8UCT ALA A 378 UNP D6WMX4 TYR 378 ENGINEERED MUTATION SEQADV 8UCT ALA A 401 UNP D6WMX4 PHE 401 ENGINEERED MUTATION SEQADV 8UCT ALA A 437 UNP D6WMX4 PHE 437 ENGINEERED MUTATION SEQRES 1 A 455 GLY PRO LEU GLY SER THR LYS GLU GLU GLU LEU GLU GLY SEQRES 2 A 455 VAL CYS ALA GLU ILE ARG GLU ALA ILE SER LYS ILE LYS SEQRES 3 A 455 ALA GLN TYR TYR ASP ILE ASP GLU SER ARG PHE GLU SER SEQRES 4 A 455 ASN PRO ILE THR LEU ASN ASP LEU SER LEU GLY LYS PRO SEQRES 5 A 455 ILE ALA LYS GLY THR ASN GLY VAL VAL TYR SER ALA LYS SEQRES 6 A 455 VAL LYS ASP ASP GLU THR ASP ASP ASN LYS TYR PRO PHE SEQRES 7 A 455 ALA LEU LYS MET MET PHE ASN TYR ASP ILE GLN SER ASN SEQRES 8 A 455 SER MET GLU ILE LEU LYS ALA MET TYR ARG GLU THR VAL SEQRES 9 A 455 PRO ALA ARG MET TYR ALA SER ASN HIS ASP LEU ASN ASN SEQRES 10 A 455 TRP GLU ILE GLU LEU ALA ASN ARG ARG LYS HIS LEU PRO SEQRES 11 A 455 PRO HIS PRO ASN ILE VAL ALA ILE PHE SER VAL PHE THR SEQRES 12 A 455 ASP LEU ILE GLN GLU LEU GLU GLY SER LYS ASP LEU TYR SEQRES 13 A 455 PRO ALA ALA LEU PRO PRO ARG LEU HIS PRO GLU GLY GLU SEQRES 14 A 455 GLY ARG ASN MET SER LEU PHE LEU LEU MET LYS ARG TYR SEQRES 15 A 455 ASP CYS ASN LEU GLN SER PHE LEU SER THR ALA PRO SER SEQRES 16 A 455 THR ARG THR SER LEU LEU LEU LEU ALA GLN LEU LEU GLU SEQRES 17 A 455 GLY VAL ALA HIS MET THR ALA HIS GLY ILE ALA HIS ARG SEQRES 18 A 455 ASP LEU LYS SER ASP ASN LEU LEU LEU ASP THR SER GLU SEQRES 19 A 455 PRO GLU SER PRO ILE LEU VAL ILE SER ASP PHE GLY CYS SEQRES 20 A 455 CYS LEU ALA ASP LYS THR ASN GLY LEU SER LEU PRO TYR SEQRES 21 A 455 THR SER ALA GLU MET ASP LYS GLY GLY ASN THR ALA LEU SEQRES 22 A 455 MET ALA PRO GLU ILE ILE CYS GLN LYS PRO GLY THR ALA SEQRES 23 A 455 SER VAL LEU ASN TYR SER LYS ALA ASP LEU TRP ALA VAL SEQRES 24 A 455 GLY ALA ILE ALA TYR GLU ILE PHE ASN CYS HIS ASN PRO SEQRES 25 A 455 PHE TYR GLY PRO SER ARG LEU LYS ASN ALA ASN TYR LYS SEQRES 26 A 455 GLU GLY ASP LEU PRO LYS LEU PRO ASP GLU VAL PRO THR SEQRES 27 A 455 VAL ILE GLN ALA LEU VAL ALA ASN LEU LEU LYS ARG ASN SEQRES 28 A 455 PRO ASN LYS ARG LEU ASP PRO GLU VAL ALA ALA ASN VAL SEQRES 29 A 455 CYS GLN LEU PHE LEU TRP ALA PRO SER THR TRP LEU LYS SEQRES 30 A 455 PRO GLY LEU LYS VAL PRO THR SER GLY GLU ILE LEU GLN SEQRES 31 A 455 TRP LEU LEU SER LEU THR THR LYS VAL LEU CYS GLU GLY SEQRES 32 A 455 LYS ILE ASN ASN LYS SER PHE GLY GLU LYS PHE THR ARG SEQRES 33 A 455 ASN TRP ARG ARG THR TYR PRO GLU TYR LEU LEU ILE SER SEQRES 34 A 455 SER PHE LEU CYS ARG ALA LYS LEU ALA ASN VAL ARG ASN SEQRES 35 A 455 ALA LEU HIS TRP ILE GLN GLU ASN LEU PRO GLU LEU ASP HET DTT A 601 18 HET SO4 A 602 5 HET SO4 A 603 5 HET 3YT A 604 29 HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM SO4 SULFATE ION HETNAM 3YT 2-{[(1R,2S)-2-AMINOCYCLOHEXYL]AMINO}-4-{[3-(2H-1,2,3- HETNAM 2 3YT TRIAZOL-2-YL)PHENYL]AMINO}PYRIMIDINE-5-CARBOXAMIDE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 2 DTT C4 H10 O2 S2 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 3YT C19 H23 N9 O FORMUL 6 HOH *23(H2 O) HELIX 1 AA1 LYS A 122 ASN A 155 1 34 HELIX 2 AA2 ASN A 206 THR A 218 1 13 HELIX 3 AA3 LEU A 301 LEU A 305 1 5 HELIX 4 AA4 SER A 310 HIS A 331 1 22 HELIX 5 AA5 ASP A 359 CYS A 363 5 5 HELIX 6 AA6 ALA A 390 CYS A 395 1 6 HELIX 7 AA7 LYS A 408 PHE A 422 1 15 HELIX 8 AA8 PRO A 452 LEU A 463 1 12 HELIX 9 AA9 ASN A 466 ARG A 470 5 5 HELIX 10 AB1 ASP A 472 ALA A 486 1 15 HELIX 11 AB2 PRO A 487 LYS A 492 1 6 HELIX 12 AB3 THR A 499 LEU A 515 1 17 HELIX 13 AB4 TYR A 537 ARG A 549 1 13 HELIX 14 AB5 LYS A 551 ASN A 565 1 15 SHEET 1 AA1 5 LEU A 162 LEU A 164 0 SHEET 2 AA1 5 VAL A 175 VAL A 181 -1 O LYS A 180 N SER A 163 SHEET 3 AA1 5 PHE A 193 TYR A 201 -1 O PHE A 193 N ALA A 179 SHEET 4 AA1 5 ASN A 287 LYS A 295 -1 O LEU A 290 N MET A 198 SHEET 5 AA1 5 ILE A 253 THR A 258 -1 N SER A 255 O LEU A 293 SHEET 1 AA2 3 CYS A 299 ASN A 300 0 SHEET 2 AA2 3 LEU A 343 ASP A 346 -1 O LEU A 345 N CYS A 299 SHEET 3 AA2 3 ILE A 354 ILE A 357 -1 O VAL A 356 N LEU A 344 SHEET 1 AA3 2 SER A 372 PRO A 374 0 SHEET 2 AA3 2 VAL A 403 ASN A 405 -1 O LEU A 404 N LEU A 373 CRYST1 53.216 53.216 545.580 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018791 0.010849 0.000000 0.00000 SCALE2 0.000000 0.021698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001833 0.00000