HEADER TRANSFERASE/INHIBITOR 29-SEP-23 8UDV TITLE THE X-RAY CO-CRYSTAL STRUCTURE OF HUMAN FGFR3 V555M AND COMPOUND 17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 3; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: FGFR-3; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGFR3, JTK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS FGFR INHIBITOR, COVALENT DRUG, KIN-3248, ALTERATION, MUTATION, KEYWDS 2 STRUCTURE-BASED DRUG DESIGN, KINASE INHIBITOR, SIGNALING, KEYWDS 3 PROLIFERATION, TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.TYHONAS,L.D.ARNOLD,J.COX,A.FRANOVIC,E.GARDINER,K.GRANDINETTI, AUTHOR 2 R.KANIA,T.KANOUNI,M.LARDY,C.LI,E.S.MARTIN,N.MILLER,A.MOHAN, AUTHOR 3 E.A.MURPHY,M.PEREZ,L.SOROCEANU,N.TIMPLE,S.URYU,S.WOMBLE,S.W.KALDOR REVDAT 3 30-OCT-24 8UDV 1 REMARK REVDAT 2 21-FEB-24 8UDV 1 JRNL REVDAT 1 07-FEB-24 8UDV 0 JRNL AUTH J.S.TYHONAS,L.D.ARNOLD,J.M.COX,A.FRANOVIC,E.GARDINER, JRNL AUTH 2 K.GRANDINETTI,R.KANIA,T.KANOUNI,M.LARDY,C.LI,E.S.MARTIN, JRNL AUTH 3 N.MILLER,A.MOHAN,E.A.MURPHY,M.PEREZ,L.SOROCEANU,N.TIMPLE, JRNL AUTH 4 S.URYU,S.WOMBLE,S.W.KALDOR JRNL TITL DISCOVERY OF KIN-3248, AN IRREVERSIBLE, NEXT GENERATION FGFR JRNL TITL 2 INHIBITOR FOR THE TREATMENT OF ADVANCED TUMORS HARBORING JRNL TITL 3 FGFR2 AND/OR FGFR3 GENE ALTERATIONS. JRNL REF J.MED.CHEM. V. 67 1734 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 38267212 JRNL DOI 10.1021/ACS.JMEDCHEM.3C01819 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 42158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2148 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2955 REMARK 3 BIN FREE R VALUE : 0.3035 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 54 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 150 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.26820 REMARK 3 B22 (A**2) : -8.90600 REMARK 3 B33 (A**2) : 11.17430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.06970 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.411 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.252 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 13454 ; 3.000 ; HARMONIC REMARK 3 BOND ANGLES : 24369 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 4030 ; 5.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 2054 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6830 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 850 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 10685 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|459 - A|742 } REMARK 3 ORIGIN FOR THE GROUP (A): -41.1286 24.6601 29.0983 REMARK 3 T TENSOR REMARK 3 T11: -0.0289 T22: -0.0647 REMARK 3 T33: -0.0276 T12: 0.0042 REMARK 3 T13: 0.0125 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.571 L22: 0.2228 REMARK 3 L33: 1.117 L12: -0.2643 REMARK 3 L13: 0.303 L23: -0.3678 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0133 S13: -0.0028 REMARK 3 S21: 0.0133 S22: -0.0066 S23: -0.0403 REMARK 3 S31: -0.0028 S32: -0.0403 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|455 - B|743 } REMARK 3 ORIGIN FOR THE GROUP (A): -69.6046 11.9504 12.3711 REMARK 3 T TENSOR REMARK 3 T11: -0.0796 T22: -0.0423 REMARK 3 T33: -0.0333 T12: 0.0044 REMARK 3 T13: 0.0258 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.4175 L22: 1.5416 REMARK 3 L33: 0.9196 L12: -0.1456 REMARK 3 L13: -0.0777 L23: 0.8429 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.0298 S13: 0.0323 REMARK 3 S21: 0.0298 S22: -0.0022 S23: -0.0818 REMARK 3 S31: 0.0323 S32: -0.0818 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|459 - C|742 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.8604 12.007 35.4852 REMARK 3 T TENSOR REMARK 3 T11: -0.0468 T22: -0.0176 REMARK 3 T33: -0.0617 T12: 0.0782 REMARK 3 T13: 0.0129 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.838 L22: 0.1044 REMARK 3 L33: 1.3726 L12: -0.2209 REMARK 3 L13: 0.4279 L23: 0.3095 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.0071 S13: 0.0732 REMARK 3 S21: -0.0071 S22: 0.0709 S23: 0.0466 REMARK 3 S31: 0.0732 S32: 0.0466 S33: -0.0445 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000277869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.348 REMARK 200 RESOLUTION RANGE LOW (A) : 34.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 M BIS-TRIS/HCL PH 6.50, 0.20 M REMARK 280 (NH4)2SO4, 25.00 % (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.33200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.33200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1001 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 B 801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 454 REMARK 465 SER A 455 REMARK 465 GLU A 456 REMARK 465 LEU A 457 REMARK 465 ASP A 641 REMARK 465 VAL A 642 REMARK 465 HIS A 643 REMARK 465 ASN A 644 REMARK 465 LEU A 645 REMARK 465 ASP A 646 REMARK 465 TYR A 647 REMARK 465 SER A 756 REMARK 465 HIS A 757 REMARK 465 HIS A 758 REMARK 465 HIS A 759 REMARK 465 HIS A 760 REMARK 465 HIS A 761 REMARK 465 HIS A 762 REMARK 465 MET B 454 REMARK 465 ASP B 641 REMARK 465 VAL B 642 REMARK 465 HIS B 643 REMARK 465 ASN B 644 REMARK 465 LEU B 645 REMARK 465 ASP B 646 REMARK 465 TYR B 647 REMARK 465 TYR B 648 REMARK 465 SER B 756 REMARK 465 HIS B 757 REMARK 465 HIS B 758 REMARK 465 HIS B 759 REMARK 465 HIS B 760 REMARK 465 HIS B 761 REMARK 465 HIS B 762 REMARK 465 MET C 454 REMARK 465 SER C 455 REMARK 465 GLU C 456 REMARK 465 LEU C 457 REMARK 465 GLY C 479 REMARK 465 ARG C 640 REMARK 465 ASP C 641 REMARK 465 VAL C 642 REMARK 465 HIS C 643 REMARK 465 ASN C 644 REMARK 465 LEU C 645 REMARK 465 ASP C 646 REMARK 465 TYR C 647 REMARK 465 TYR C 648 REMARK 465 LYS C 649 REMARK 465 LYS C 650 REMARK 465 THR C 651 REMARK 465 THR C 652 REMARK 465 ASN C 653 REMARK 465 GLY C 654 REMARK 465 ARG C 655 REMARK 465 SER C 756 REMARK 465 HIS C 757 REMARK 465 HIS C 758 REMARK 465 HIS C 759 REMARK 465 HIS C 760 REMARK 465 HIS C 761 REMARK 465 HIS C 762 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 468 O1 SO4 B 802 1.50 REMARK 500 HH12 ARG A 571 O4 SO4 A 1004 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 480 -114.00 -125.94 REMARK 500 ARG A 616 -11.55 75.00 REMARK 500 GLU B 480 -112.27 -121.90 REMARK 500 ARG B 616 -13.95 79.40 REMARK 500 ASP B 617 59.11 -151.80 REMARK 500 ARG B 669 53.79 37.87 REMARK 500 TRP B 731 31.92 -95.99 REMARK 500 ASN C 537 32.23 -98.56 REMARK 500 ARG C 616 -10.54 77.07 REMARK 500 ASP C 617 63.01 -150.76 REMARK 500 ASP C 635 38.16 70.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8UDT RELATED DB: PDB REMARK 900 RELATED ID: 8UDU RELATED DB: PDB DBREF 8UDV A 455 756 UNP P22607 FGFR3_HUMAN 455 756 DBREF 8UDV B 455 756 UNP P22607 FGFR3_HUMAN 455 756 DBREF 8UDV C 455 756 UNP P22607 FGFR3_HUMAN 455 756 SEQADV 8UDV MET A 454 UNP P22607 INITIATING METHIONINE SEQADV 8UDV MET A 555 UNP P22607 VAL 555 ENGINEERED MUTATION SEQADV 8UDV A UNP P22607 PRO 572 DELETION SEQADV 8UDV A UNP P22607 PRO 573 DELETION SEQADV 8UDV A UNP P22607 GLY 574 DELETION SEQADV 8UDV A UNP P22607 LEU 575 DELETION SEQADV 8UDV A UNP P22607 ASP 576 DELETION SEQADV 8UDV A UNP P22607 TYR 577 DELETION SEQADV 8UDV A UNP P22607 SER 578 DELETION SEQADV 8UDV A UNP P22607 PHE 579 DELETION SEQADV 8UDV A UNP P22607 ASP 580 DELETION SEQADV 8UDV A UNP P22607 THR 581 DELETION SEQADV 8UDV A UNP P22607 CYS 582 DELETION SEQADV 8UDV A UNP P22607 LYS 583 DELETION SEQADV 8UDV SER A 572 UNP P22607 PRO 584 CONFLICT SEQADV 8UDV GLY A 573 UNP P22607 PRO 585 CONFLICT SEQADV 8UDV HIS A 757 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS A 758 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS A 759 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS A 760 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS A 761 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS A 762 UNP P22607 EXPRESSION TAG SEQADV 8UDV MET B 454 UNP P22607 INITIATING METHIONINE SEQADV 8UDV MET B 555 UNP P22607 VAL 555 ENGINEERED MUTATION SEQADV 8UDV B UNP P22607 PRO 572 DELETION SEQADV 8UDV B UNP P22607 PRO 573 DELETION SEQADV 8UDV B UNP P22607 GLY 574 DELETION SEQADV 8UDV B UNP P22607 LEU 575 DELETION SEQADV 8UDV B UNP P22607 ASP 576 DELETION SEQADV 8UDV B UNP P22607 TYR 577 DELETION SEQADV 8UDV B UNP P22607 SER 578 DELETION SEQADV 8UDV B UNP P22607 PHE 579 DELETION SEQADV 8UDV B UNP P22607 ASP 580 DELETION SEQADV 8UDV B UNP P22607 THR 581 DELETION SEQADV 8UDV B UNP P22607 CYS 582 DELETION SEQADV 8UDV B UNP P22607 LYS 583 DELETION SEQADV 8UDV SER B 572 UNP P22607 PRO 584 CONFLICT SEQADV 8UDV GLY B 573 UNP P22607 PRO 585 CONFLICT SEQADV 8UDV HIS B 757 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS B 758 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS B 759 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS B 760 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS B 761 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS B 762 UNP P22607 EXPRESSION TAG SEQADV 8UDV MET C 454 UNP P22607 INITIATING METHIONINE SEQADV 8UDV MET C 555 UNP P22607 VAL 555 ENGINEERED MUTATION SEQADV 8UDV C UNP P22607 PRO 572 DELETION SEQADV 8UDV C UNP P22607 PRO 573 DELETION SEQADV 8UDV C UNP P22607 GLY 574 DELETION SEQADV 8UDV C UNP P22607 LEU 575 DELETION SEQADV 8UDV C UNP P22607 ASP 576 DELETION SEQADV 8UDV C UNP P22607 TYR 577 DELETION SEQADV 8UDV C UNP P22607 SER 578 DELETION SEQADV 8UDV C UNP P22607 PHE 579 DELETION SEQADV 8UDV C UNP P22607 ASP 580 DELETION SEQADV 8UDV C UNP P22607 THR 581 DELETION SEQADV 8UDV C UNP P22607 CYS 582 DELETION SEQADV 8UDV C UNP P22607 LYS 583 DELETION SEQADV 8UDV SER C 572 UNP P22607 PRO 584 CONFLICT SEQADV 8UDV GLY C 573 UNP P22607 PRO 585 CONFLICT SEQADV 8UDV HIS C 757 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS C 758 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS C 759 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS C 760 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS C 761 UNP P22607 EXPRESSION TAG SEQADV 8UDV HIS C 762 UNP P22607 EXPRESSION TAG SEQRES 1 A 297 MET SER GLU LEU GLU LEU PRO ALA ASP PRO LYS TRP GLU SEQRES 2 A 297 LEU SER ARG ALA ARG LEU THR LEU GLY LYS PRO LEU GLY SEQRES 3 A 297 GLU GLY CYS PHE GLY GLN VAL VAL MET ALA GLU ALA ILE SEQRES 4 A 297 GLY ILE ASP LYS ASP ARG ALA ALA LYS PRO VAL THR VAL SEQRES 5 A 297 ALA VAL LYS MET LEU LYS ASP ASP ALA THR ASP LYS ASP SEQRES 6 A 297 LEU SER ASP LEU VAL SER GLU MET GLU MET MET LYS MET SEQRES 7 A 297 ILE GLY LYS HIS LYS ASN ILE ILE ASN LEU LEU GLY ALA SEQRES 8 A 297 CYS THR GLN GLY GLY PRO LEU TYR VAL LEU MET GLU TYR SEQRES 9 A 297 ALA ALA LYS GLY ASN LEU ARG GLU PHE LEU ARG ALA ARG SEQRES 10 A 297 ARG SER GLY GLU GLU GLN LEU THR PHE LYS ASP LEU VAL SEQRES 11 A 297 SER CYS ALA TYR GLN VAL ALA ARG GLY MET GLU TYR LEU SEQRES 12 A 297 ALA SER GLN LYS CYS ILE HIS ARG ASP LEU ALA ALA ARG SEQRES 13 A 297 ASN VAL LEU VAL THR GLU ASP ASN VAL MET LYS ILE ALA SEQRES 14 A 297 ASP PHE GLY LEU ALA ARG ASP VAL HIS ASN LEU ASP TYR SEQRES 15 A 297 TYR LYS LYS THR THR ASN GLY ARG LEU PRO VAL LYS TRP SEQRES 16 A 297 MET ALA PRO GLU ALA LEU PHE ASP ARG VAL TYR THR HIS SEQRES 17 A 297 GLN SER ASP VAL TRP SER PHE GLY VAL LEU LEU TRP GLU SEQRES 18 A 297 ILE PHE THR LEU GLY GLY SER PRO TYR PRO GLY ILE PRO SEQRES 19 A 297 VAL GLU GLU LEU PHE LYS LEU LEU LYS GLU GLY HIS ARG SEQRES 20 A 297 MET ASP LYS PRO ALA ASN CYS THR HIS ASP LEU TYR MET SEQRES 21 A 297 ILE MET ARG GLU CYS TRP HIS ALA ALA PRO SER GLN ARG SEQRES 22 A 297 PRO THR PHE LYS GLN LEU VAL GLU ASP LEU ASP ARG VAL SEQRES 23 A 297 LEU THR VAL THR SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 297 MET SER GLU LEU GLU LEU PRO ALA ASP PRO LYS TRP GLU SEQRES 2 B 297 LEU SER ARG ALA ARG LEU THR LEU GLY LYS PRO LEU GLY SEQRES 3 B 297 GLU GLY CYS PHE GLY GLN VAL VAL MET ALA GLU ALA ILE SEQRES 4 B 297 GLY ILE ASP LYS ASP ARG ALA ALA LYS PRO VAL THR VAL SEQRES 5 B 297 ALA VAL LYS MET LEU LYS ASP ASP ALA THR ASP LYS ASP SEQRES 6 B 297 LEU SER ASP LEU VAL SER GLU MET GLU MET MET LYS MET SEQRES 7 B 297 ILE GLY LYS HIS LYS ASN ILE ILE ASN LEU LEU GLY ALA SEQRES 8 B 297 CYS THR GLN GLY GLY PRO LEU TYR VAL LEU MET GLU TYR SEQRES 9 B 297 ALA ALA LYS GLY ASN LEU ARG GLU PHE LEU ARG ALA ARG SEQRES 10 B 297 ARG SER GLY GLU GLU GLN LEU THR PHE LYS ASP LEU VAL SEQRES 11 B 297 SER CYS ALA TYR GLN VAL ALA ARG GLY MET GLU TYR LEU SEQRES 12 B 297 ALA SER GLN LYS CYS ILE HIS ARG ASP LEU ALA ALA ARG SEQRES 13 B 297 ASN VAL LEU VAL THR GLU ASP ASN VAL MET LYS ILE ALA SEQRES 14 B 297 ASP PHE GLY LEU ALA ARG ASP VAL HIS ASN LEU ASP TYR SEQRES 15 B 297 TYR LYS LYS THR THR ASN GLY ARG LEU PRO VAL LYS TRP SEQRES 16 B 297 MET ALA PRO GLU ALA LEU PHE ASP ARG VAL TYR THR HIS SEQRES 17 B 297 GLN SER ASP VAL TRP SER PHE GLY VAL LEU LEU TRP GLU SEQRES 18 B 297 ILE PHE THR LEU GLY GLY SER PRO TYR PRO GLY ILE PRO SEQRES 19 B 297 VAL GLU GLU LEU PHE LYS LEU LEU LYS GLU GLY HIS ARG SEQRES 20 B 297 MET ASP LYS PRO ALA ASN CYS THR HIS ASP LEU TYR MET SEQRES 21 B 297 ILE MET ARG GLU CYS TRP HIS ALA ALA PRO SER GLN ARG SEQRES 22 B 297 PRO THR PHE LYS GLN LEU VAL GLU ASP LEU ASP ARG VAL SEQRES 23 B 297 LEU THR VAL THR SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 297 MET SER GLU LEU GLU LEU PRO ALA ASP PRO LYS TRP GLU SEQRES 2 C 297 LEU SER ARG ALA ARG LEU THR LEU GLY LYS PRO LEU GLY SEQRES 3 C 297 GLU GLY CYS PHE GLY GLN VAL VAL MET ALA GLU ALA ILE SEQRES 4 C 297 GLY ILE ASP LYS ASP ARG ALA ALA LYS PRO VAL THR VAL SEQRES 5 C 297 ALA VAL LYS MET LEU LYS ASP ASP ALA THR ASP LYS ASP SEQRES 6 C 297 LEU SER ASP LEU VAL SER GLU MET GLU MET MET LYS MET SEQRES 7 C 297 ILE GLY LYS HIS LYS ASN ILE ILE ASN LEU LEU GLY ALA SEQRES 8 C 297 CYS THR GLN GLY GLY PRO LEU TYR VAL LEU MET GLU TYR SEQRES 9 C 297 ALA ALA LYS GLY ASN LEU ARG GLU PHE LEU ARG ALA ARG SEQRES 10 C 297 ARG SER GLY GLU GLU GLN LEU THR PHE LYS ASP LEU VAL SEQRES 11 C 297 SER CYS ALA TYR GLN VAL ALA ARG GLY MET GLU TYR LEU SEQRES 12 C 297 ALA SER GLN LYS CYS ILE HIS ARG ASP LEU ALA ALA ARG SEQRES 13 C 297 ASN VAL LEU VAL THR GLU ASP ASN VAL MET LYS ILE ALA SEQRES 14 C 297 ASP PHE GLY LEU ALA ARG ASP VAL HIS ASN LEU ASP TYR SEQRES 15 C 297 TYR LYS LYS THR THR ASN GLY ARG LEU PRO VAL LYS TRP SEQRES 16 C 297 MET ALA PRO GLU ALA LEU PHE ASP ARG VAL TYR THR HIS SEQRES 17 C 297 GLN SER ASP VAL TRP SER PHE GLY VAL LEU LEU TRP GLU SEQRES 18 C 297 ILE PHE THR LEU GLY GLY SER PRO TYR PRO GLY ILE PRO SEQRES 19 C 297 VAL GLU GLU LEU PHE LYS LEU LEU LYS GLU GLY HIS ARG SEQRES 20 C 297 MET ASP LYS PRO ALA ASN CYS THR HIS ASP LEU TYR MET SEQRES 21 C 297 ILE MET ARG GLU CYS TRP HIS ALA ALA PRO SER GLN ARG SEQRES 22 C 297 PRO THR PHE LYS GLN LEU VAL GLU ASP LEU ASP ARG VAL SEQRES 23 C 297 LEU THR VAL THR SER HIS HIS HIS HIS HIS HIS HET SO4 A1001 5 HET SO4 A1002 5 HET WIQ A1003 37 HET SO4 A1004 5 HET SO4 B 801 5 HET SO4 B 802 5 HET WIQ B 803 37 HET SO4 C1001 5 HET SO4 C1002 5 HET EDO C1003 4 HET WIQ C1004 37 HETNAM SO4 SULFATE ION HETNAM WIQ 3-[(6-CHLORO-1-CYCLOPROPYL-1H-BENZIMIDAZOL-5-YL) HETNAM 2 WIQ ETHYNYL]-1-[(3S,5S)-5-(METHOXYMETHYL)-1-(PROP-2- HETNAM 3 WIQ ENOYL)PYRROLIDIN-3-YL]-5-(METHYLAMINO)-1H-PYRAZOLE-4- HETNAM 4 WIQ CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 7(O4 S 2-) FORMUL 6 WIQ 3(C26 H30 CL N7 O3) FORMUL 13 EDO C2 H6 O2 FORMUL 15 HOH *373(H2 O) HELIX 1 AA1 ASP A 462 GLU A 466 5 5 HELIX 2 AA2 SER A 468 ALA A 470 5 3 HELIX 3 AA3 THR A 515 GLY A 533 1 19 HELIX 4 AA4 ASN A 562 ARG A 570 1 9 HELIX 5 AA5 THR A 590 GLN A 611 1 22 HELIX 6 AA6 ALA A 619 ARG A 621 5 3 HELIX 7 AA7 LEU A 656 MET A 661 5 6 HELIX 8 AA8 ALA A 662 ARG A 669 1 8 HELIX 9 AA9 THR A 672 THR A 689 1 18 HELIX 10 AB1 PRO A 699 GLU A 709 1 11 HELIX 11 AB2 THR A 720 TRP A 731 1 12 HELIX 12 AB3 ALA A 734 ARG A 738 5 5 HELIX 13 AB4 THR A 740 THR A 755 1 16 HELIX 14 AB5 ASP B 462 GLU B 466 5 5 HELIX 15 AB6 SER B 468 ALA B 470 5 3 HELIX 16 AB7 THR B 515 GLY B 533 1 19 HELIX 17 AB8 ASN B 562 ARG B 570 1 9 HELIX 18 AB9 THR B 590 GLN B 611 1 22 HELIX 19 AC1 ALA B 619 ARG B 621 5 3 HELIX 20 AC2 LEU B 656 MET B 661 5 6 HELIX 21 AC3 ALA B 662 ARG B 669 1 8 HELIX 22 AC4 THR B 672 THR B 689 1 18 HELIX 23 AC5 PRO B 699 GLU B 709 1 11 HELIX 24 AC6 THR B 720 TRP B 731 1 12 HELIX 25 AC7 ALA B 734 ARG B 738 5 5 HELIX 26 AC8 THR B 740 THR B 755 1 16 HELIX 27 AC9 ASP C 462 GLU C 466 5 5 HELIX 28 AD1 SER C 468 ALA C 470 5 3 HELIX 29 AD2 THR C 515 GLY C 533 1 19 HELIX 30 AD3 ASN C 562 ARG C 570 1 9 HELIX 31 AD4 THR C 590 GLN C 611 1 22 HELIX 32 AD5 ALA C 619 ARG C 621 5 3 HELIX 33 AD6 LEU C 656 MET C 661 5 6 HELIX 34 AD7 ALA C 662 ARG C 669 1 8 HELIX 35 AD8 THR C 672 THR C 689 1 18 HELIX 36 AD9 PRO C 699 GLU C 709 1 11 HELIX 37 AE1 THR C 720 TRP C 731 1 12 HELIX 38 AE2 ALA C 734 ARG C 738 5 5 HELIX 39 AE3 THR C 740 THR C 755 1 16 SHEET 1 AA1 5 LEU A 472 PRO A 477 0 SHEET 2 AA1 5 GLN A 485 ILE A 492 -1 O MET A 488 N LYS A 476 SHEET 3 AA1 5 PRO A 502 MET A 509 -1 O VAL A 507 N VAL A 487 SHEET 4 AA1 5 TYR A 552 GLU A 556 -1 O MET A 555 N ALA A 506 SHEET 5 AA1 5 LEU A 541 CYS A 545 -1 N LEU A 542 O LEU A 554 SHEET 1 AA2 2 VAL A 623 VAL A 625 0 SHEET 2 AA2 2 MET A 631 ILE A 633 -1 O LYS A 632 N LEU A 624 SHEET 1 AA3 5 LEU B 472 PRO B 477 0 SHEET 2 AA3 5 GLN B 485 ILE B 492 -1 O MET B 488 N LYS B 476 SHEET 3 AA3 5 PRO B 502 MET B 509 -1 O VAL B 507 N VAL B 487 SHEET 4 AA3 5 TYR B 552 GLU B 556 -1 O MET B 555 N ALA B 506 SHEET 5 AA3 5 LEU B 541 CYS B 545 -1 N LEU B 542 O LEU B 554 SHEET 1 AA4 2 VAL B 623 VAL B 625 0 SHEET 2 AA4 2 MET B 631 ILE B 633 -1 O LYS B 632 N LEU B 624 SHEET 1 AA5 5 LEU C 472 PRO C 477 0 SHEET 2 AA5 5 GLN C 485 ILE C 492 -1 O MET C 488 N LYS C 476 SHEET 3 AA5 5 PRO C 502 MET C 509 -1 O VAL C 507 N VAL C 487 SHEET 4 AA5 5 TYR C 552 GLU C 556 -1 O MET C 555 N ALA C 506 SHEET 5 AA5 5 LEU C 541 CYS C 545 -1 N LEU C 542 O LEU C 554 SHEET 1 AA6 2 VAL C 623 VAL C 625 0 SHEET 2 AA6 2 MET C 631 ILE C 633 -1 O LYS C 632 N LEU C 624 LINK SG CYS A 482 C20 WIQ A1003 1555 1555 1.78 LINK SG CYS B 482 C20 WIQ B 803 1555 1555 1.76 LINK SG CYS C 482 C20 WIQ C1004 1555 1555 1.78 CRYST1 170.664 54.513 128.718 90.00 120.22 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005859 0.000000 0.003413 0.00000 SCALE2 0.000000 0.018344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008991 0.00000