HEADER HYDROLASE 05-OCT-23 8UGM TITLE FPHE, STAPHYLOCOCCUS AUREUS FLUOROPHOSPHONATE-BINDING SERINE TITLE 2 HYDROLASES E, BORONIC ACID-BASED COMPOUND Z27 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUOROPHOSPHONATE-BINDING SERINE HYDROLASE E; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS USA300; SOURCE 3 ORGANISM_TAXID: 1385527; SOURCE 4 GENE: SAUSA300_2518; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FPHE, STAPHYLOCOCCUS AUREUS, S. AUREUS, FLUOROPHOSPHONATE-BINDING, KEYWDS 2 SERINE HYDROLASES, LIPASE, BORONIC ACID, COVALENT, BORON-SERINE, KEYWDS 3 BORON-HISTIDINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER REVDAT 2 25-JUN-25 8UGM 1 SOURCE JRNL REVDAT 1 16-OCT-24 8UGM 0 JRNL AUTH T.UPADHYAY,E.C.WOODS,S.DELA AHATOR,K.JULIN,F.F.FAUCHER, JRNL AUTH 2 M.J.UDDIN,M.J.HOLLANDER,N.J.PEDOWITZ,D.ABEGG,I.HAMMOND, JRNL AUTH 3 I.E.EKE,S.WANG,S.CHEN,J.M.BENNETT,J.JO,C.S.LENTZ, JRNL AUTH 4 A.ADIBEKIAN,M.FELLNER,M.BOGYO JRNL TITL IDENTIFICATION OF COVALENT INHIBITORS OF STAPHYLOCOCCUS JRNL TITL 2 AUREUS SERINE HYDROLASES IMPORTANT FOR VIRULENCE AND BIOFILM JRNL TITL 3 FORMATION. JRNL REF NAT COMMUN V. 16 5046 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40447595 JRNL DOI 10.1038/S41467-025-60367-3 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 59652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8200 - 4.6100 1.00 2634 166 0.1551 0.1761 REMARK 3 2 4.6100 - 3.6600 1.00 2618 142 0.1171 0.1525 REMARK 3 3 3.6600 - 3.2000 1.00 2676 99 0.1399 0.2020 REMARK 3 4 3.2000 - 2.9100 1.00 2578 140 0.1553 0.1716 REMARK 3 5 2.9100 - 2.7000 1.00 2617 148 0.1538 0.2087 REMARK 3 6 2.7000 - 2.5400 1.00 2599 131 0.1492 0.1989 REMARK 3 7 2.5400 - 2.4100 1.00 2609 136 0.1423 0.1668 REMARK 3 8 2.4100 - 2.3100 1.00 2585 132 0.1359 0.1805 REMARK 3 9 2.3100 - 2.2200 1.00 2579 148 0.1437 0.1849 REMARK 3 10 2.2200 - 2.1400 1.00 2577 149 0.1479 0.1975 REMARK 3 11 2.1400 - 2.0800 1.00 2624 132 0.1517 0.2001 REMARK 3 12 2.0800 - 2.0200 1.00 2598 120 0.1569 0.2123 REMARK 3 13 2.0200 - 1.9600 1.00 2563 157 0.1557 0.1997 REMARK 3 14 1.9600 - 1.9200 1.00 2595 149 0.1552 0.2068 REMARK 3 15 1.9100 - 1.8700 1.00 2557 149 0.1613 0.2066 REMARK 3 16 1.8700 - 1.8300 1.00 2632 107 0.1632 0.2178 REMARK 3 17 1.8300 - 1.8000 1.00 2549 142 0.1800 0.2350 REMARK 3 18 1.8000 - 1.7600 1.00 2628 141 0.1800 0.2333 REMARK 3 19 1.7600 - 1.7300 1.00 2527 165 0.1783 0.2029 REMARK 3 20 1.7300 - 1.7000 1.00 2634 122 0.1917 0.2458 REMARK 3 21 1.7000 - 1.6700 0.96 2492 120 0.2022 0.2492 REMARK 3 22 1.6700 - 1.6500 0.84 2170 116 0.2317 0.3019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4609 REMARK 3 ANGLE : 1.128 6271 REMARK 3 CHIRALITY : 0.059 675 REMARK 3 PLANARITY : 0.012 827 REMARK 3 DIHEDRAL : 6.426 611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3377 -6.7123 9.6660 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.0992 REMARK 3 T33: 0.1327 T12: 0.0094 REMARK 3 T13: 0.0169 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.9113 L22: 1.0519 REMARK 3 L33: 1.4142 L12: 0.1264 REMARK 3 L13: -0.0963 L23: -0.1166 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: 0.0264 S13: 0.0997 REMARK 3 S21: -0.0226 S22: -0.0169 S23: -0.0214 REMARK 3 S31: -0.2083 S32: -0.0024 S33: -0.0481 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5992 -26.7166 -6.3223 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.1730 REMARK 3 T33: 0.2341 T12: -0.0033 REMARK 3 T13: -0.0130 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.3941 L22: 0.1726 REMARK 3 L33: 3.3686 L12: -0.8184 REMARK 3 L13: 3.4285 L23: -0.8232 REMARK 3 S TENSOR REMARK 3 S11: 0.1619 S12: 0.1344 S13: 0.0435 REMARK 3 S21: -0.0365 S22: -0.1009 S23: -0.0249 REMARK 3 S31: 0.1465 S32: 0.1254 S33: -0.1136 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5633 -13.3852 -24.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.0986 REMARK 3 T33: 0.1308 T12: 0.0026 REMARK 3 T13: 0.0115 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.1312 L22: 1.3609 REMARK 3 L33: 2.3295 L12: 0.1796 REMARK 3 L13: 0.1657 L23: 0.6943 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0154 S13: -0.0168 REMARK 3 S21: -0.0230 S22: 0.0325 S23: -0.0400 REMARK 3 S31: 0.0747 S32: 0.0928 S33: 0.0078 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1245 -7.0405 -23.8243 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1512 REMARK 3 T33: 0.1383 T12: -0.0196 REMARK 3 T13: -0.0041 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.6387 L22: 1.0564 REMARK 3 L33: 1.7829 L12: 0.0698 REMARK 3 L13: -0.0730 L23: 0.2654 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0187 S13: 0.0802 REMARK 3 S21: -0.0128 S22: 0.0865 S23: -0.1169 REMARK 3 S31: -0.0865 S32: 0.3426 S33: -0.0252 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2407 -16.0591 16.2666 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.1216 REMARK 3 T33: 0.1327 T12: -0.0080 REMARK 3 T13: 0.0090 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.9374 L22: 1.3764 REMARK 3 L33: 2.1667 L12: 0.0836 REMARK 3 L13: 0.3560 L23: -0.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: -0.0847 S13: 0.0209 REMARK 3 S21: 0.0675 S22: -0.0300 S23: 0.0950 REMARK 3 S31: 0.0268 S32: -0.2611 S33: -0.0682 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20220220 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59687 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 46.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.94400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20UL 25.0 MG/ML FPHE (10MM HEPES PH REMARK 280 7.5, 100MM NACL) WERE MIXED WITH 3UL Z27 (50MM IN DMSO) AND REMARK 280 INCUBATED AT 4C OVERNIGHT. 0.3 UL FPHE-Z27 SOLUTION WAS MIXED REMARK 280 WITH 0.15 UL OF RESERVOIR SOLUTION. SITTING DROP RESERVOIR REMARK 280 CONTAINED 25 UL OF 180MM CALCIUM ACETATE, 100MM MES PH 6.5, 22.5% REMARK 280 PEG 2000 MME. CRYSTAL APPEARED WITHIN 2.5 DAYS AT 16C AND GREW REMARK 280 UNTIL 14.5 DAYS WHEN IT WAS FROZEN IN A SOLUTION OF ~25% REMARK 280 GLYCEROL, 75% RESERVOIR., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.98550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 574 O HOH B 590 1.88 REMARK 500 O HOH B 405 O HOH B 487 1.89 REMARK 500 O HOH A 491 O HOH A 527 1.89 REMARK 500 O HOH A 417 O HOH A 611 1.93 REMARK 500 O HOH B 413 O HOH B 535 1.98 REMARK 500 O HOH A 407 O HOH B 424 2.03 REMARK 500 OG SER A 103 O1 WKK A 301 2.18 REMARK 500 OE2 GLU B 154 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 408 O HOH A 526 2455 1.98 REMARK 500 O HOH A 551 O HOH A 601 2445 2.04 REMARK 500 O HOH A 556 O HOH B 484 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 103 -123.96 52.67 REMARK 500 SER B 103 -125.76 59.06 REMARK 500 GLU B 201 -50.83 -124.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 80 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 15 O REMARK 620 2 ASN A 168 OD1 88.4 REMARK 620 3 HOH A 476 O 157.6 80.8 REMARK 620 4 HOH A 533 O 79.7 23.1 82.8 REMARK 620 5 HOH A 537 O 92.4 52.7 96.4 74.8 REMARK 620 6 HOH A 551 O 85.6 152.9 95.2 130.0 153.8 REMARK 620 7 HOH A 601 O 87.1 103.0 76.5 81.2 155.7 50.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 83 OE1 REMARK 620 2 TYR A 116 OH 72.1 REMARK 620 3 HOH A 494 O 71.1 133.3 REMARK 620 4 HOH A 498 O 114.4 83.0 86.9 REMARK 620 5 HOH B 411 O 133.3 151.5 74.4 94.0 REMARK 620 6 HOH B 457 O 142.7 76.0 146.1 79.8 75.5 REMARK 620 7 HOH B 485 O 78.8 95.1 104.8 165.0 80.6 85.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 114 O REMARK 620 2 HOH A 587 O 80.7 REMARK 620 3 HOH A 603 O 85.4 57.5 REMARK 620 4 HOH A 614 O 100.5 127.8 172.5 REMARK 620 5 HOH B 418 O 140.5 127.0 88.3 84.1 REMARK 620 6 HOH B 488 O 68.2 145.9 104.8 73.5 75.9 REMARK 620 7 HOH B 582 O 140.9 61.7 83.3 94.7 76.4 150.8 REMARK 620 N 1 2 3 4 5 6 DBREF 8UGM A 1 276 UNP Q2FDS6 Y2518_STAA3 1 276 DBREF 8UGM B 1 276 UNP Q2FDS6 Y2518_STAA3 1 276 SEQADV 8UGM GLY A -2 UNP Q2FDS6 EXPRESSION TAG SEQADV 8UGM PRO A -1 UNP Q2FDS6 EXPRESSION TAG SEQADV 8UGM GLY A 0 UNP Q2FDS6 EXPRESSION TAG SEQADV 8UGM GLY B -2 UNP Q2FDS6 EXPRESSION TAG SEQADV 8UGM PRO B -1 UNP Q2FDS6 EXPRESSION TAG SEQADV 8UGM GLY B 0 UNP Q2FDS6 EXPRESSION TAG SEQRES 1 A 279 GLY PRO GLY MET GLU THR LEU GLU LEU GLN GLY ALA LYS SEQRES 2 A 279 LEU ARG TYR HIS GLN VAL GLY GLN GLY PRO VAL LEU ILE SEQRES 3 A 279 PHE ILE PRO GLY ALA ASN GLY THR GLY ASP ILE PHE LEU SEQRES 4 A 279 PRO LEU ALA GLU GLN LEU LYS ASP HIS PHE THR VAL VAL SEQRES 5 A 279 ALA VAL ASP ARG ARG ASP TYR GLY GLU SER GLU LEU THR SEQRES 6 A 279 GLU PRO LEU PRO ASP SER ALA SER ASN PRO ASP SER ASP SEQRES 7 A 279 TYR ARG VAL LYS ARG ASP ALA GLN ASP ILE ALA GLU LEU SEQRES 8 A 279 ALA LYS SER LEU SER ASP GLU PRO VAL TYR ILE LEU GLY SEQRES 9 A 279 SER SER SER GLY SER ILE VAL ALA MET HIS VAL LEU LYS SEQRES 10 A 279 ASP TYR PRO GLU VAL VAL LYS LYS ILE ALA PHE HIS GLU SEQRES 11 A 279 PRO PRO ILE ASN THR PHE LEU PRO ASP SER THR TYR TRP SEQRES 12 A 279 LYS ASP LYS ASN ASP ASP ILE VAL HIS GLN ILE LEU THR SEQRES 13 A 279 GLU GLY LEU GLU LYS GLY MET LYS THR PHE GLY GLU THR SEQRES 14 A 279 LEU ASN ILE ALA PRO ILE ASP ALA LYS MET MET SER GLN SEQRES 15 A 279 PRO ALA ASP THR GLU GLU GLY ARG ILE GLU GLN TYR LYS SEQRES 16 A 279 ARG THR MET PHE TRP LEU GLU PHE GLU ILE ARG GLN TYR SEQRES 17 A 279 THR HIS SER ASN ILE THR LEU ASP ASP PHE THR LYS TYR SEQRES 18 A 279 SER ASP LYS ILE THR LEU LEU ASN GLY THR ASP SER ARG SEQRES 19 A 279 GLY SER PHE PRO GLN ASP VAL ASN PHE TYR ILE ASN LYS SEQRES 20 A 279 GLU THR GLY ILE PRO ILE VAL ASP ILE PRO GLY GLY HIS SEQRES 21 A 279 LEU GLY TYR ILE GLN LYS PRO GLU GLY PHE ALA ASP VAL SEQRES 22 A 279 LEU LEU ASN MET TRP GLY SEQRES 1 B 279 GLY PRO GLY MET GLU THR LEU GLU LEU GLN GLY ALA LYS SEQRES 2 B 279 LEU ARG TYR HIS GLN VAL GLY GLN GLY PRO VAL LEU ILE SEQRES 3 B 279 PHE ILE PRO GLY ALA ASN GLY THR GLY ASP ILE PHE LEU SEQRES 4 B 279 PRO LEU ALA GLU GLN LEU LYS ASP HIS PHE THR VAL VAL SEQRES 5 B 279 ALA VAL ASP ARG ARG ASP TYR GLY GLU SER GLU LEU THR SEQRES 6 B 279 GLU PRO LEU PRO ASP SER ALA SER ASN PRO ASP SER ASP SEQRES 7 B 279 TYR ARG VAL LYS ARG ASP ALA GLN ASP ILE ALA GLU LEU SEQRES 8 B 279 ALA LYS SER LEU SER ASP GLU PRO VAL TYR ILE LEU GLY SEQRES 9 B 279 SER SER SER GLY SER ILE VAL ALA MET HIS VAL LEU LYS SEQRES 10 B 279 ASP TYR PRO GLU VAL VAL LYS LYS ILE ALA PHE HIS GLU SEQRES 11 B 279 PRO PRO ILE ASN THR PHE LEU PRO ASP SER THR TYR TRP SEQRES 12 B 279 LYS ASP LYS ASN ASP ASP ILE VAL HIS GLN ILE LEU THR SEQRES 13 B 279 GLU GLY LEU GLU LYS GLY MET LYS THR PHE GLY GLU THR SEQRES 14 B 279 LEU ASN ILE ALA PRO ILE ASP ALA LYS MET MET SER GLN SEQRES 15 B 279 PRO ALA ASP THR GLU GLU GLY ARG ILE GLU GLN TYR LYS SEQRES 16 B 279 ARG THR MET PHE TRP LEU GLU PHE GLU ILE ARG GLN TYR SEQRES 17 B 279 THR HIS SER ASN ILE THR LEU ASP ASP PHE THR LYS TYR SEQRES 18 B 279 SER ASP LYS ILE THR LEU LEU ASN GLY THR ASP SER ARG SEQRES 19 B 279 GLY SER PHE PRO GLN ASP VAL ASN PHE TYR ILE ASN LYS SEQRES 20 B 279 GLU THR GLY ILE PRO ILE VAL ASP ILE PRO GLY GLY HIS SEQRES 21 B 279 LEU GLY TYR ILE GLN LYS PRO GLU GLY PHE ALA ASP VAL SEQRES 22 B 279 LEU LEU ASN MET TRP GLY HET WKK A 301 17 HET WKK A 302 19 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET WKK B 301 19 HET WKK B 302 17 HETNAM WKK 1-BENZOTHIOPHEN-3-YLBORONIC ACID HETNAM CA CALCIUM ION FORMUL 3 WKK 4(C8 H7 B O2 S) FORMUL 5 CA 3(CA 2+) FORMUL 10 HOH *483(H2 O) HELIX 1 AA1 THR A 31 ILE A 34 5 4 HELIX 2 AA2 PHE A 35 LYS A 43 1 9 HELIX 3 AA3 PRO A 66 ASN A 71 5 6 HELIX 4 AA4 ASP A 75 SER A 93 1 19 HELIX 5 AA5 SER A 103 TYR A 116 1 14 HELIX 6 AA6 ASP A 136 THR A 153 1 18 HELIX 7 AA7 THR A 153 LEU A 167 1 15 HELIX 8 AA8 ALA A 170 GLN A 179 1 10 HELIX 9 AA9 THR A 183 GLU A 201 1 19 HELIX 10 AB1 GLU A 201 HIS A 207 1 7 HELIX 11 AB2 THR A 211 TYR A 218 1 8 HELIX 12 AB3 SER A 233 GLY A 247 1 15 HELIX 13 AB4 LEU A 258 LYS A 263 1 6 HELIX 14 AB5 LYS A 263 GLY A 276 1 14 HELIX 15 AB6 THR B 31 ILE B 34 5 4 HELIX 16 AB7 PHE B 35 LYS B 43 1 9 HELIX 17 AB8 PRO B 66 ASN B 71 5 6 HELIX 18 AB9 ASP B 75 SER B 93 1 19 HELIX 19 AC1 SER B 103 TYR B 116 1 14 HELIX 20 AC2 ASP B 136 THR B 153 1 18 HELIX 21 AC3 THR B 153 LEU B 167 1 15 HELIX 22 AC4 ALA B 170 GLN B 179 1 10 HELIX 23 AC5 THR B 183 GLU B 201 1 19 HELIX 24 AC6 GLU B 201 HIS B 207 1 7 HELIX 25 AC7 THR B 211 LYS B 217 1 7 HELIX 26 AC8 TYR B 218 ASP B 220 5 3 HELIX 27 AC9 SER B 233 GLY B 247 1 15 HELIX 28 AD1 LEU B 258 LYS B 263 1 6 HELIX 29 AD2 LYS B 263 GLY B 276 1 14 SHEET 1 AA1 3 GLU A 2 LEU A 6 0 SHEET 2 AA1 3 ALA A 9 GLY A 17 -1 O LEU A 11 N LEU A 4 SHEET 3 AA1 3 GLU A 60 LEU A 61 -1 O GLU A 60 N LYS A 10 SHEET 1 AA2 8 GLU A 2 LEU A 6 0 SHEET 2 AA2 8 ALA A 9 GLY A 17 -1 O LEU A 11 N LEU A 4 SHEET 3 AA2 8 THR A 47 ASP A 52 -1 O ALA A 50 N HIS A 14 SHEET 4 AA2 8 VAL A 21 ILE A 25 1 N PHE A 24 O VAL A 49 SHEET 5 AA2 8 VAL A 97 SER A 102 1 O TYR A 98 N ILE A 23 SHEET 6 AA2 8 VAL A 120 HIS A 126 1 O LYS A 121 N VAL A 97 SHEET 7 AA2 8 ILE B 222 GLY B 227 1 O THR B 223 N PHE A 125 SHEET 8 AA2 8 ILE B 250 ILE B 253 1 O VAL B 251 N LEU B 224 SHEET 1 AA3 8 ILE A 250 ILE A 253 0 SHEET 2 AA3 8 ILE A 222 GLY A 227 1 N LEU A 224 O VAL A 251 SHEET 3 AA3 8 VAL B 120 HIS B 126 1 O PHE B 125 N LEU A 225 SHEET 4 AA3 8 VAL B 97 SER B 102 1 N VAL B 97 O LYS B 121 SHEET 5 AA3 8 VAL B 21 ILE B 25 1 N ILE B 23 O TYR B 98 SHEET 6 AA3 8 THR B 47 ASP B 52 1 O VAL B 49 N PHE B 24 SHEET 7 AA3 8 ALA B 9 GLY B 17 -1 N HIS B 14 O ALA B 50 SHEET 8 AA3 8 GLU B 2 LEU B 6 -1 N GLU B 2 O TYR B 13 SHEET 1 AA4 8 ILE A 250 ILE A 253 0 SHEET 2 AA4 8 ILE A 222 GLY A 227 1 N LEU A 224 O VAL A 251 SHEET 3 AA4 8 VAL B 120 HIS B 126 1 O PHE B 125 N LEU A 225 SHEET 4 AA4 8 VAL B 97 SER B 102 1 N VAL B 97 O LYS B 121 SHEET 5 AA4 8 VAL B 21 ILE B 25 1 N ILE B 23 O TYR B 98 SHEET 6 AA4 8 THR B 47 ASP B 52 1 O VAL B 49 N PHE B 24 SHEET 7 AA4 8 ALA B 9 GLY B 17 -1 N HIS B 14 O ALA B 50 SHEET 8 AA4 8 GLU B 60 LEU B 61 -1 O GLU B 60 N LYS B 10 LINK OG SER A 103 B1 WKK A 301 1555 1555 1.41 LINK NE2 HIS A 257 B1 WKK B 302 1555 1555 1.46 LINK B1 WKK A 301 NE2 HIS B 257 1555 1555 1.45 LINK OG SER B 103 B1 WKK B 302 1555 1555 1.41 LINK O GLN A 15 CA CA A 303 1555 1555 2.23 LINK OE1 GLN A 83 CA CA A 304 1555 1555 2.35 LINK O LYS A 114 CA CA A 305 1555 1555 2.34 LINK OH TYR A 116 CA CA A 304 1555 1555 2.56 LINK OD1 ASN A 168 CA CA A 303 1555 2445 2.28 LINK CA CA A 303 O HOH A 476 1555 2455 2.39 LINK CA CA A 303 O HOH A 533 1555 2455 2.54 LINK CA CA A 303 O HOH A 537 1555 2455 2.35 LINK CA CA A 303 O HOH A 551 1555 2455 2.15 LINK CA CA A 303 O HOH A 601 1555 1555 2.56 LINK CA CA A 304 O HOH A 494 1555 1555 2.41 LINK CA CA A 304 O HOH A 498 1555 1555 2.41 LINK CA CA A 304 O HOH B 411 1555 1655 2.53 LINK CA CA A 304 O HOH B 457 1555 1655 2.39 LINK CA CA A 304 O HOH B 485 1555 1655 2.39 LINK CA CA A 305 O HOH A 587 1555 1555 2.36 LINK CA CA A 305 O HOH A 603 1555 1555 2.57 LINK CA CA A 305 O HOH A 614 1555 1555 2.24 LINK CA CA A 305 O HOH B 418 1555 1655 2.34 LINK CA CA A 305 O HOH B 488 1555 1555 2.57 LINK CA CA A 305 O HOH B 582 1555 1655 2.37 CRYST1 46.723 73.971 73.183 90.00 91.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021403 0.000000 0.000534 0.00000 SCALE2 0.000000 0.013519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013669 0.00000 CONECT 247 8810 CONECT 1291 8811 CONECT 1615 8775 CONECT 1766 8812 CONECT 1808 8811 CONECT 4105 8833 CONECT 6001 8833 CONECT 8465 8775 CONECT 8774 8775 8785 CONECT 8775 1615 8465 8774 8776 CONECT 8776 8775 8777 8783 CONECT 8777 8776 8784 8786 CONECT 8778 8779 8783 8784 CONECT 8779 8778 8780 8787 CONECT 8780 8779 8781 8788 CONECT 8781 8780 8782 8789 CONECT 8782 8781 8783 8790 CONECT 8783 8776 8778 8782 CONECT 8784 8777 8778 CONECT 8785 8774 CONECT 8786 8777 CONECT 8787 8779 CONECT 8788 8780 CONECT 8789 8781 CONECT 8790 8782 CONECT 8791 8792 8803 CONECT 8792 8791 8793 8801 CONECT 8793 8792 8794 8800 CONECT 8794 8793 8802 8804 CONECT 8795 8796 8800 8802 CONECT 8796 8795 8797 8805 CONECT 8797 8796 8798 8806 CONECT 8798 8797 8799 8807 CONECT 8799 8798 8800 8808 CONECT 8800 8793 8795 8799 CONECT 8801 8792 8809 CONECT 8802 8794 8795 CONECT 8803 8791 CONECT 8804 8794 CONECT 8805 8796 CONECT 8806 8797 CONECT 8807 8798 CONECT 8808 8799 CONECT 8809 8801 CONECT 8810 247 9049 CONECT 8811 1291 1808 8942 8946 CONECT 8812 1766 9035 9051 9062 CONECT 8812 9192 CONECT 8813 8814 8825 CONECT 8814 8813 8815 8823 CONECT 8815 8814 8816 8822 CONECT 8816 8815 8824 8826 CONECT 8817 8818 8822 8824 CONECT 8818 8817 8819 8827 CONECT 8819 8818 8820 8828 CONECT 8820 8819 8821 8829 CONECT 8821 8820 8822 8830 CONECT 8822 8815 8817 8821 CONECT 8823 8814 8831 CONECT 8824 8816 8817 CONECT 8825 8813 CONECT 8826 8816 CONECT 8827 8818 CONECT 8828 8819 CONECT 8829 8820 CONECT 8830 8821 CONECT 8831 8823 CONECT 8832 8833 8843 CONECT 8833 4105 6001 8832 8834 CONECT 8834 8833 8835 8841 CONECT 8835 8834 8842 8844 CONECT 8836 8837 8841 8842 CONECT 8837 8836 8838 8845 CONECT 8838 8837 8839 8846 CONECT 8839 8838 8840 8847 CONECT 8840 8839 8841 8848 CONECT 8841 8834 8836 8840 CONECT 8842 8835 8836 CONECT 8843 8832 CONECT 8844 8835 CONECT 8845 8837 CONECT 8846 8838 CONECT 8847 8839 CONECT 8848 8840 CONECT 8942 8811 CONECT 8946 8811 CONECT 9035 8812 CONECT 9049 8810 CONECT 9051 8812 CONECT 9062 8812 CONECT 9192 8812 MASTER 412 0 7 29 27 0 0 6 4918 2 91 44 END