HEADER TRANSFERASE 15-OCT-23 8UKX TITLE CRYSTAL STRUCTURE THE EXTRACELLULAR REGION OF THE EPIDERMAL GROWTH TITLE 2 FACTOR RECEPTOR VARIANT III (EGFRVIII) AT PH 7.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: VAR_066493; SOURCE 6 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS CELL SURFACE RECEPTOR, GLYCOPROTEIN, EXTRACELLULAR, GLIOBLASTOMA, KEYWDS 2 ONCOGENIC VARIANT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.STAYROOK,K.M.FERGUSON REVDAT 5 09-OCT-24 8UKX 1 REMARK REVDAT 4 25-SEP-24 8UKX 1 JRNL REVDAT 3 18-SEP-24 8UKX 1 JRNL REVDAT 2 03-JUL-24 8UKX 1 JRNL REVDAT 1 12-JUN-24 8UKX 0 JRNL AUTH A.BAGCHI,S.E.STAYROOK,K.T.XENAKI,C.A.STARBIRD,S.DOULKERIDOU, JRNL AUTH 2 R.EL KHOULATI,R.C.ROOVERS,K.R.SCHMITZ, JRNL AUTH 3 P.M.P.VAN BERGEN EN HENEGOUWEN,K.M.FERGUSON JRNL TITL STRUCTURAL INSIGHTS INTO THE ROLE AND TARGETING OF EGFRVIII. JRNL REF STRUCTURE V. 32 1367 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38908376 JRNL DOI 10.1016/J.STR.2024.05.018 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (14-JUN-2023) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 7646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.288 REMARK 3 R VALUE (WORKING SET) : 0.286 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 384 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.26 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 386 REMARK 3 BIN R VALUE (WORKING SET) : 0.4218 REMARK 3 BIN FREE R VALUE : 0.5270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.22 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 147.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -34.62080 REMARK 3 B22 (A**2) : -32.07470 REMARK 3 B33 (A**2) : 66.69550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.620 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.588 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2395 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3280 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 778 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 424 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2395 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 346 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1729 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.50 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.82 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -2.9386 8.3636 -22.4919 REMARK 3 T TENSOR REMARK 3 T11: -0.1158 T22: 0.1850 REMARK 3 T33: 0.0136 T12: 0.1069 REMARK 3 T13: -0.1520 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 1.7844 REMARK 3 L33: 4.5289 L12: -0.3444 REMARK 3 L13: -0.4243 L23: 2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: -0.1554 S13: -0.2554 REMARK 3 S21: 0.5442 S22: 0.3200 S23: 0.0723 REMARK 3 S31: 0.0169 S32: 0.5442 S33: -0.2500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 300 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7669 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7MG/ML PROTEIN, 27.5% PEG 3350, 5% REMARK 280 GLYCEROL, 100 MM HEPES, PH 7.0, +5% GLYCEROL FOR CRYO, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.78950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.66150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.56350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.66150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.78950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.56350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 GLU A 270 REMARK 465 LYS A 271 REMARK 465 LYS A 272 REMARK 465 GLY A 273 REMARK 465 ASN A 274 REMARK 465 TYR A 275 REMARK 465 VAL A 276 REMARK 465 VAL A 277 REMARK 465 THR A 278 REMARK 465 ASP A 279 REMARK 465 HIS A 280 REMARK 465 GLY A 281 REMARK 465 SER A 282 REMARK 465 SER A 283 REMARK 465 VAL A 284 REMARK 465 ARG A 285 REMARK 465 ALA A 286 REMARK 465 CYS A 287 REMARK 465 GLY A 288 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 SER A 291 REMARK 465 TYR A 292 REMARK 465 GLU A 293 REMARK 465 MET A 294 REMARK 465 GLU A 295 REMARK 465 PRO A 617 REMARK 465 LYS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 ASP A 297 CG OD1 OD2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 ASN A 314 CG OD1 ND2 REMARK 470 LEU A 325 CG CD1 CD2 REMARK 470 ILE A 332 CG1 CG2 CD1 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ILE A 341 CG1 CG2 CD1 REMARK 470 LEU A 348 CG CD1 CD2 REMARK 470 THR A 358 OG1 CG2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 HIS A 394 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 420 CG OD1 ND2 REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 VAL A 481 CG1 CG2 REMARK 470 ARG A 497 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 500 CG1 CG2 REMARK 470 ARG A 503 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 VAL A 526 CG1 CG2 REMARK 470 LEU A 539 CG CD1 CD2 REMARK 470 MET A 543 CG SD CE REMARK 470 ARG A 550 CG CD NE CZ NH1 NH2 REMARK 470 MET A 576 CG SD CE REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 ASN A 579 CG OD1 ND2 REMARK 470 ASN A 580 CG OD1 ND2 REMARK 470 THR A 581 OG1 CG2 REMARK 470 LEU A 582 CG CD1 CD2 REMARK 470 VAL A 583 CG1 CG2 REMARK 470 LEU A 595 CG CD1 CD2 REMARK 470 ASN A 599 CG OD1 ND2 REMARK 470 TYR A 602 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 605 OG1 CG2 REMARK 470 LEU A 609 CG CD1 CD2 REMARK 470 GLU A 610 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 297 47.96 -92.76 REMARK 500 CYS A 302 -83.13 83.71 REMARK 500 LYS A 304 -78.07 67.90 REMARK 500 CYS A 305 -26.57 -155.23 REMARK 500 GLU A 306 -138.90 -154.43 REMARK 500 CYS A 309 163.26 134.40 REMARK 500 ARG A 310 129.04 -22.49 REMARK 500 PHE A 321 38.94 -97.02 REMARK 500 ALA A 329 37.69 -78.00 REMARK 500 ILE A 341 78.40 -105.88 REMARK 500 ASP A 369 -9.61 -58.28 REMARK 500 ASN A 389 -6.47 -59.78 REMARK 500 GLU A 397 -6.86 -59.12 REMARK 500 GLN A 411 -22.81 -147.69 REMARK 500 ASN A 420 38.97 -82.37 REMARK 500 LEU A 426 49.29 -104.14 REMARK 500 ASP A 434 -67.22 -124.33 REMARK 500 ASN A 442 73.36 -110.05 REMARK 500 TYR A 447 -20.94 66.25 REMARK 500 ASN A 469 -138.92 -125.03 REMARK 500 GLN A 480 52.47 -99.07 REMARK 500 GLU A 489 21.93 -74.11 REMARK 500 ASN A 504 -97.91 -96.95 REMARK 500 PRO A 522 112.70 -3.34 REMARK 500 GLU A 537 34.41 -82.14 REMARK 500 MET A 543 -22.70 76.75 REMARK 500 HIS A 560 -111.02 -128.69 REMARK 500 GLU A 578 -9.56 -56.61 REMARK 500 THR A 605 -46.50 -132.32 REMARK 500 CYS A 612 -19.05 -157.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8UKW RELATED DB: PDB REMARK 900 8UKW CONTAINS THE SAME PROTEIN IN DIFFERENT SPACE GROUP, DIFFERENCE REMARK 900 PH REMARK 900 RELATED ID: 8UKV RELATED DB: PDB REMARK 900 8UKV CONTAINS THE SAME PROTEIN IN COMPLEX WITH A NANOBODY DBREF 8UKX A 268 273 UNP P00533 EGFR_HUMAN 25 30 DBREF 8UKX A 274 618 UNP P00533 EGFR_HUMAN 298 642 SEQADV 8UKX GLY A 273 UNP P00533 VAL 30 ENGINEERED MUTATION SEQADV 8UKX SER A 283 UNP P00533 CYS 307 ENGINEERED MUTATION SEQADV 8UKX HIS A 619 UNP P00533 EXPRESSION TAG SEQADV 8UKX HIS A 620 UNP P00533 EXPRESSION TAG SEQADV 8UKX HIS A 621 UNP P00533 EXPRESSION TAG SEQADV 8UKX HIS A 622 UNP P00533 EXPRESSION TAG SEQADV 8UKX HIS A 623 UNP P00533 EXPRESSION TAG SEQADV 8UKX HIS A 624 UNP P00533 EXPRESSION TAG SEQRES 1 A 357 LEU GLU GLU LYS LYS GLY ASN TYR VAL VAL THR ASP HIS SEQRES 2 A 357 GLY SER SER VAL ARG ALA CYS GLY ALA ASP SER TYR GLU SEQRES 3 A 357 MET GLU GLU ASP GLY VAL ARG LYS CYS LYS LYS CYS GLU SEQRES 4 A 357 GLY PRO CYS ARG LYS VAL CYS ASN GLY ILE GLY ILE GLY SEQRES 5 A 357 GLU PHE LYS ASP SER LEU SER ILE ASN ALA THR ASN ILE SEQRES 6 A 357 LYS HIS PHE LYS ASN CYS THR SER ILE SER GLY ASP LEU SEQRES 7 A 357 HIS ILE LEU PRO VAL ALA PHE ARG GLY ASP SER PHE THR SEQRES 8 A 357 HIS THR PRO PRO LEU ASP PRO GLN GLU LEU ASP ILE LEU SEQRES 9 A 357 LYS THR VAL LYS GLU ILE THR GLY PHE LEU LEU ILE GLN SEQRES 10 A 357 ALA TRP PRO GLU ASN ARG THR ASP LEU HIS ALA PHE GLU SEQRES 11 A 357 ASN LEU GLU ILE ILE ARG GLY ARG THR LYS GLN HIS GLY SEQRES 12 A 357 GLN PHE SER LEU ALA VAL VAL SER LEU ASN ILE THR SER SEQRES 13 A 357 LEU GLY LEU ARG SER LEU LYS GLU ILE SER ASP GLY ASP SEQRES 14 A 357 VAL ILE ILE SER GLY ASN LYS ASN LEU CYS TYR ALA ASN SEQRES 15 A 357 THR ILE ASN TRP LYS LYS LEU PHE GLY THR SER GLY GLN SEQRES 16 A 357 LYS THR LYS ILE ILE SER ASN ARG GLY GLU ASN SER CYS SEQRES 17 A 357 LYS ALA THR GLY GLN VAL CYS HIS ALA LEU CYS SER PRO SEQRES 18 A 357 GLU GLY CYS TRP GLY PRO GLU PRO ARG ASP CYS VAL SER SEQRES 19 A 357 CYS ARG ASN VAL SER ARG GLY ARG GLU CYS VAL ASP LYS SEQRES 20 A 357 CYS ASN LEU LEU GLU GLY GLU PRO ARG GLU PHE VAL GLU SEQRES 21 A 357 ASN SER GLU CYS ILE GLN CYS HIS PRO GLU CYS LEU PRO SEQRES 22 A 357 GLN ALA MET ASN ILE THR CYS THR GLY ARG GLY PRO ASP SEQRES 23 A 357 ASN CYS ILE GLN CYS ALA HIS TYR ILE ASP GLY PRO HIS SEQRES 24 A 357 CYS VAL LYS THR CYS PRO ALA GLY VAL MET GLY GLU ASN SEQRES 25 A 357 ASN THR LEU VAL TRP LYS TYR ALA ASP ALA GLY HIS VAL SEQRES 26 A 357 CYS HIS LEU CYS HIS PRO ASN CYS THR TYR GLY CYS THR SEQRES 27 A 357 GLY PRO GLY LEU GLU GLY CYS PRO THR ASN GLY PRO LYS SEQRES 28 A 357 HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET FUC B 2 10 HET NAG A 701 14 HET NAG A 702 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 HELIX 1 AA1 ILE A 318 LYS A 322 5 5 HELIX 2 AA2 ASN A 331 LYS A 336 5 6 HELIX 3 AA3 LEU A 348 GLY A 354 1 7 HELIX 4 AA4 GLN A 366 LYS A 372 5 7 HELIX 5 AA5 LEU A 393 GLU A 397 5 5 HELIX 6 AA6 LYS A 407 GLY A 410 5 4 HELIX 7 AA7 ASN A 452 PHE A 457 1 6 HELIX 8 AA8 GLY A 471 THR A 478 1 8 HELIX 9 AA9 GLY A 551 CYS A 555 5 5 SHEET 1 AA1 2 VAL A 312 CYS A 313 0 SHEET 2 AA1 2 SER A 340 ILE A 341 1 O SER A 340 N CYS A 313 SHEET 1 AA2 5 LEU A 345 ILE A 347 0 SHEET 2 AA2 5 LEU A 381 ILE A 383 1 O LEU A 382 N LEU A 345 SHEET 3 AA2 5 PHE A 412 VAL A 417 1 O SER A 413 N LEU A 381 SHEET 4 AA2 5 ASP A 436 SER A 440 1 O ILE A 438 N VAL A 416 SHEET 5 AA2 5 THR A 464 ILE A 467 1 O LYS A 465 N ILE A 439 SHEET 1 AA3 3 GLU A 376 ILE A 377 0 SHEET 2 AA3 3 ILE A 401 ILE A 402 1 O ILE A 401 N ILE A 377 SHEET 3 AA3 3 GLU A 431 ILE A 432 1 O GLU A 431 N ILE A 402 SHEET 1 AA4 2 VAL A 505 SER A 506 0 SHEET 2 AA4 2 CYS A 511 VAL A 512 -1 O VAL A 512 N VAL A 505 SHEET 1 AA5 2 GLU A 524 VAL A 526 0 SHEET 2 AA5 2 CYS A 531 GLN A 533 -1 O ILE A 532 N PHE A 525 SHEET 1 AA6 5 HIS A 566 VAL A 568 0 SHEET 2 AA6 5 TYR A 561 ASP A 563 -1 N TYR A 561 O VAL A 568 SHEET 3 AA6 5 VAL A 592 LEU A 595 1 N CYS A 593 O ILE A 562 SHEET 4 AA6 5 THR A 581 ALA A 587 -1 N TYR A 586 O HIS A 594 SHEET 5 AA6 5 ALA A 573 GLY A 577 -1 N VAL A 575 O VAL A 583 SSBOND 1 CYS A 305 CYS A 309 1555 1555 2.04 SSBOND 2 CYS A 313 CYS A 338 1555 1555 2.03 SSBOND 3 CYS A 446 CYS A 475 1555 1555 2.04 SSBOND 4 CYS A 482 CYS A 491 1555 1555 2.04 SSBOND 5 CYS A 486 CYS A 499 1555 1555 2.04 SSBOND 6 CYS A 502 CYS A 511 1555 1555 2.03 SSBOND 7 CYS A 515 CYS A 531 1555 1555 2.04 SSBOND 8 CYS A 534 CYS A 547 1555 1555 2.02 SSBOND 9 CYS A 538 CYS A 555 1555 1555 2.03 SSBOND 10 CYS A 558 CYS A 567 1555 1555 2.02 SSBOND 11 CYS A 571 CYS A 593 1555 1555 2.03 SSBOND 12 CYS A 596 CYS A 604 1555 1555 2.03 SSBOND 13 CYS A 600 CYS A 612 1555 1555 2.04 LINK ND2 ASN A 337 C1 NAG A 701 1555 1555 1.43 LINK ND2 ASN A 504 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 544 C1 NAG A 702 1555 1555 1.44 LINK O6 NAG B 1 C1 FUC B 2 1555 1555 1.41 CRYST1 43.579 97.127 115.323 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008671 0.00000