HEADER HYDROLASE,ONCOPROTEIN/INHIBITOR 18-OCT-23 8UN4
TITLE KRAS-G13D-GDP IN COMPLEX WITH CPD36 ((E)-1-((3S)-4-(7-(6-AMINO-4-
TITLE 2 METHYL-3-(TRIFLUOROMETHYL)PYRIDIN-2-YL)-6-CHLORO-8-FLUORO-2-(((S)-2-
TITLE 3 METHYLENETETRAHYDRO-1H-PYRROLIZIN-7A(5H)-YL)METHOXY)QUINAZOLIN-4-YL)-
TITLE 4 3-METHYLPIPERAZIN-1-YL)-3-(4-((DIMETHYLAMINO)METHYL)-5-METHYLPYRIDIN-
TITLE 5 2-YL)PROP-2-EN-1-ONE)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GTPASE KRAS;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 2-169;
COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS;
COMPND 6 EC: 3.6.5.2;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KRAS, KRAS2, RASK2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS GTPASE, KRAS, G13D, ONCOGENIC, HYDROLASE, ONCOPROTEIN-INHIBITOR
KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.H.ULTSCH
REVDAT 2 31-JAN-24 8UN4 1 JRNL
REVDAT 1 20-DEC-23 8UN4 0
JRNL AUTH C.NILEWSKI,S.LABADIE,B.WEI,S.MALHOTRA,S.DO,L.GAZZARD,L.LIU,
JRNL AUTH 2 C.SHAO,J.MURRAY,Y.IZRAYELIT,A.GUSTAFSON,N.F.ENDRES,F.MA,
JRNL AUTH 3 X.YE,J.ZOU,M.EVANGELISTA
JRNL TITL STRUCTURE-BASED DESIGN AND EVALUATION OF REVERSIBLE KRAS
JRNL TITL 2 G13D INHIBITORS.
JRNL REF ACS MED.CHEM.LETT. V. 15 21 2024
JRNL REFN ISSN 1948-5875
JRNL PMID 38229748
JRNL DOI 10.1021/ACSMEDCHEMLETT.3C00478
REMARK 2
REMARK 2 RESOLUTION. 1.57 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.19.1-4122
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.74
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 76.4
REMARK 3 NUMBER OF REFLECTIONS : 21127
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.191
REMARK 3 R VALUE (WORKING SET) : 0.190
REMARK 3 FREE R VALUE : 0.215
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060
REMARK 3 FREE R VALUE TEST SET COUNT : 1070
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 42.7400 - 3.1500 0.99 3454 182 0.1552 0.1710
REMARK 3 2 3.1500 - 2.5000 1.00 3342 161 0.1810 0.1959
REMARK 3 3 2.5000 - 2.1800 1.00 3272 181 0.1825 0.2261
REMARK 3 4 2.1800 - 1.9800 1.00 3226 195 0.2120 0.2607
REMARK 3 5 1.9800 - 1.8400 0.98 3207 143 0.2645 0.2855
REMARK 3 6 1.8400 - 1.7300 0.74 2395 139 0.3300 0.3679
REMARK 3 7 1.7300 - 1.6500 0.27 862 53 0.5735 0.5875
REMARK 3 8 1.6500 - 1.5700 0.09 299 16 1.0418 0.7339
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.500
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 25.02
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.23
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 7
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 25 )
REMARK 3 ORIGIN FOR THE GROUP (A): 4.3612 19.2178 13.5593
REMARK 3 T TENSOR
REMARK 3 T11: 0.1218 T22: 0.1702
REMARK 3 T33: 0.1137 T12: -0.0181
REMARK 3 T13: -0.0078 T23: 0.0279
REMARK 3 L TENSOR
REMARK 3 L11: 1.5456 L22: 1.8660
REMARK 3 L33: 0.7139 L12: -0.3991
REMARK 3 L13: 0.3102 L23: 0.2186
REMARK 3 S TENSOR
REMARK 3 S11: -0.1340 S12: 0.2783 S13: 0.1815
REMARK 3 S21: -0.1198 S22: -0.0353 S23: 0.0302
REMARK 3 S31: -0.0939 S32: 0.0493 S33: -0.0184
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 37 )
REMARK 3 ORIGIN FOR THE GROUP (A): -2.2369 24.4999 21.2570
REMARK 3 T TENSOR
REMARK 3 T11: 0.2156 T22: 0.2095
REMARK 3 T33: 0.2604 T12: 0.0111
REMARK 3 T13: 0.0750 T23: -0.0131
REMARK 3 L TENSOR
REMARK 3 L11: 0.7140 L22: 0.3780
REMARK 3 L33: 0.3782 L12: -0.3662
REMARK 3 L13: 0.3927 L23: -0.1149
REMARK 3 S TENSOR
REMARK 3 S11: -0.0308 S12: 0.0115 S13: 0.3529
REMARK 3 S21: -0.0048 S22: 0.0027 S23: -0.0181
REMARK 3 S31: -0.1317 S32: 0.0091 S33: -0.0001
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 57 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.7109 21.3967 5.5948
REMARK 3 T TENSOR
REMARK 3 T11: 0.1941 T22: 0.4200
REMARK 3 T33: 0.2108 T12: -0.0755
REMARK 3 T13: 0.0044 T23: 0.1220
REMARK 3 L TENSOR
REMARK 3 L11: 0.2495 L22: 0.8620
REMARK 3 L33: 0.0893 L12: -0.2999
REMARK 3 L13: -0.1245 L23: 0.1887
REMARK 3 S TENSOR
REMARK 3 S11: -0.2075 S12: 0.5805 S13: 0.3179
REMARK 3 S21: -0.1993 S22: -0.0951 S23: -0.0757
REMARK 3 S31: -0.1432 S32: 0.2435 S33: -0.2735
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.4475 5.2195 14.2511
REMARK 3 T TENSOR
REMARK 3 T11: 0.3114 T22: 0.2621
REMARK 3 T33: 0.3347 T12: -0.0597
REMARK 3 T13: 0.0578 T23: 0.0008
REMARK 3 L TENSOR
REMARK 3 L11: 0.6578 L22: 0.7726
REMARK 3 L33: 0.2010 L12: 0.1297
REMARK 3 L13: 0.2233 L23: -0.2715
REMARK 3 S TENSOR
REMARK 3 S11: -0.1447 S12: 0.1500 S13: -0.3001
REMARK 3 S21: 0.0344 S22: 0.2360 S23: 0.6319
REMARK 3 S31: 0.3267 S32: -0.5056 S33: 0.0065
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 116 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.8237 7.2712 19.2716
REMARK 3 T TENSOR
REMARK 3 T11: 0.2333 T22: 0.1268
REMARK 3 T33: 0.1900 T12: 0.0147
REMARK 3 T13: 0.0684 T23: 0.0146
REMARK 3 L TENSOR
REMARK 3 L11: 3.3008 L22: 1.6237
REMARK 3 L33: 1.0184 L12: -0.1752
REMARK 3 L13: 0.7441 L23: -0.2438
REMARK 3 S TENSOR
REMARK 3 S11: -0.1229 S12: 0.0441 S13: -0.4377
REMARK 3 S21: 0.1092 S22: 0.0521 S23: -0.2513
REMARK 3 S31: 0.3622 S32: -0.0098 S33: 0.0065
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.4121 16.6911 24.7869
REMARK 3 T TENSOR
REMARK 3 T11: 0.2290 T22: 0.2123
REMARK 3 T33: 0.2807 T12: 0.0388
REMARK 3 T13: -0.0733 T23: -0.0060
REMARK 3 L TENSOR
REMARK 3 L11: 1.5801 L22: 1.4350
REMARK 3 L33: 0.3859 L12: 0.8786
REMARK 3 L13: 0.3217 L23: -0.1430
REMARK 3 S TENSOR
REMARK 3 S11: -0.1959 S12: -0.2770 S13: 0.0104
REMARK 3 S21: 0.4322 S22: 0.1266 S23: -0.6881
REMARK 3 S31: -0.0884 S32: 0.1584 S33: -0.0094
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 169 )
REMARK 3 ORIGIN FOR THE GROUP (A): 14.8347 14.5449 7.0169
REMARK 3 T TENSOR
REMARK 3 T11: 0.1821 T22: 0.3616
REMARK 3 T33: 0.2519 T12: -0.0120
REMARK 3 T13: 0.1147 T23: 0.0256
REMARK 3 L TENSOR
REMARK 3 L11: 1.9374 L22: 1.4461
REMARK 3 L33: 3.2864 L12: 1.2638
REMARK 3 L13: 1.0274 L23: 0.6581
REMARK 3 S TENSOR
REMARK 3 S11: 0.0814 S12: 0.6465 S13: -0.3695
REMARK 3 S21: -0.3014 S22: 0.2838 S23: -0.7388
REMARK 3 S31: 0.3376 S32: 0.5232 S33: 0.2851
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8UN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-23.
REMARK 100 THE DEPOSITION ID IS D_1000278401.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-MAR-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-B
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979110
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21157
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570
REMARK 200 RESOLUTION RANGE LOW (A) : 46.663
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4
REMARK 200 DATA REDUNDANCY : 9.300
REMARK 200 R MERGE (I) : 0.07700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72
REMARK 200 COMPLETENESS FOR SHELL (%) : 54.8
REMARK 200 DATA REDUNDANCY IN SHELL : 7.80
REMARK 200 R MERGE FOR SHELL (I) : 1.87300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.92
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MMT PH 5.0, 25 % W/V POLYETHYLENE
REMARK 280 GLYCOL 1,500, EVAPORATION, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,-Y,-Z+1/2
REMARK 290 4555 -X+1/2,-Y,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 20.36500
REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.74500
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 20.36500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.74500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 437 O HOH A 456 1.76
REMARK 500 OD2 ASP A 132 O HOH A 301 1.97
REMARK 500 O HOH A 354 O HOH A 465 2.00
REMARK 500 O HOH A 383 O HOH A 410 2.09
REMARK 500 O HOH A 341 O HOH A 383 2.12
REMARK 500 O HOH A 425 O HOH A 440 2.15
REMARK 500 O HOH A 316 O HOH A 390 2.17
REMARK 500 O HOH A 309 O HOH A 447 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 461 O HOH A 477 2555 1.94
REMARK 500 O HOH A 454 O HOH A 456 3555 2.04
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 122 46.27 -99.35
REMARK 500 ARG A 149 -6.28 85.98
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 482 DISTANCE = 7.12 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 GDP A 202 O1B 92.9
REMARK 620 3 HOH A 306 O 94.1 84.9
REMARK 620 4 HOH A 311 O 82.8 98.7 175.3
REMARK 620 5 HOH A 320 O 175.9 89.4 89.6 93.5
REMARK 620 6 HOH A 365 O 88.1 172.5 87.7 88.7 90.1
REMARK 620 N 1 2 3 4 5
DBREF 8UN4 A 2 169 UNP P01116 RASK_HUMAN 2 169
SEQADV 8UN4 GLY A 0 UNP P01116 EXPRESSION TAG
SEQADV 8UN4 SER A 1 UNP P01116 EXPRESSION TAG
SEQADV 8UN4 ASP A 13 UNP P01116 GLY 13 VARIANT
SEQRES 1 A 170 GLY SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 A 170 ASP VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE
SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN
SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE
SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA
SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU
SEQRES 14 A 170 LYS
HET MG A 201 1
HET GDP A 202 28
HET XV3 A 203 103
HETNAM MG MAGNESIUM ION
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
HETNAM XV3 (2E)-1-{(3S)-4-[(7M)-7-[6-AMINO-4-METHYL-3-
HETNAM 2 XV3 (TRIFLUOROMETHYL)PYRIDIN-2-YL]-6-CHLORO-8-FLUORO-2-
HETNAM 3 XV3 {[(4R,7AS)-2-METHYLIDENETETRAHYDRO-1H-PYRROLIZIN-
HETNAM 4 XV3 7A(5H)-YL]METHOXY}QUINAZOLIN-4-YL]-3-METHYLPIPERAZIN-
HETNAM 5 XV3 1-YL}-3-{4-[(DIMETHYLAMINO)METHYL]-5-METHYLPYRIDIN-2-
HETNAM 6 XV3 YL}PROP-2-EN-1-ONE
FORMUL 2 MG MG 2+
FORMUL 3 GDP C10 H15 N5 O11 P2
FORMUL 4 XV3 C41 H46 CL F4 N9 O2
FORMUL 5 HOH *182(H2 O)
HELIX 1 AA1 GLY A 15 ASN A 26 1 12
HELIX 2 AA2 SER A 65 THR A 74 1 10
HELIX 3 AA3 ASN A 86 ASP A 92 1 7
HELIX 4 AA4 ASP A 92 ASP A 105 1 14
HELIX 5 AA5 ASP A 126 GLY A 138 1 13
HELIX 6 AA6 GLY A 151 GLU A 168 1 18
SHEET 1 AA1 6 ASP A 38 ILE A 46 0
SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44
SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56
SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9
SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82
SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113
LINK OG SER A 17 MG MG A 201 1555 1555 2.03
LINK MG MG A 201 O1B GDP A 202 1555 1555 2.03
LINK MG MG A 201 O HOH A 306 1555 1555 2.17
LINK MG MG A 201 O HOH A 311 1555 1555 2.12
LINK MG MG A 201 O HOH A 320 1555 1555 2.19
LINK MG MG A 201 O HOH A 365 1555 1555 2.16
CRYST1 40.730 55.690 85.490 90.00 90.00 90.00 P 21 2 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024552 0.000000 0.000000 0.00000
SCALE2 0.000000 0.017957 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011697 0.00000