HEADER HYDROLASE,ONCOPROTEIN/INHIBITOR 18-OCT-23 8UN5
TITLE KRAS-G13D-GDP IN COMPLEX WITH CPD38 ((E)-1-((3S)-4-(7-(6-AMINO-4-
TITLE 2 METHYL-3-(TRIFLUOROMETHYL)PYRIDIN-2-YL)-6-CHLORO-8-FLUORO-2-(((S)-2-
TITLE 3 METHYLENETETRAHYDRO-1H-PYRROLIZIN-7A(5H)-YL)METHOXY)QUINAZOLIN-4-YL)-
TITLE 4 3-METHYLPIPERAZIN-1-YL)-3-(1,2,3,4-TETRAHYDROISOQUINOLIN-8-YL)PROP-2-
TITLE 5 EN-1-ONE)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GTPASE KRAS;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: GTPASE, RESIDUES 2-168;
COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS;
COMPND 6 EC: 3.6.5.2;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KRAS, KRAS2, RASK2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS GTPASE, KRAS, G13D, ONCOGENIC, RIBOSOME, HYDROLASE, ONCOPROTEIN-
KEYWDS 2 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.H.ULTSCH
REVDAT 2 31-JAN-24 8UN5 1 JRNL
REVDAT 1 20-DEC-23 8UN5 0
JRNL AUTH C.NILEWSKI,S.LABADIE,B.WEI,S.MALHOTRA,S.DO,L.GAZZARD,L.LIU,
JRNL AUTH 2 C.SHAO,J.MURRAY,Y.IZRAYELIT,A.GUSTAFSON,N.F.ENDRES,F.MA,
JRNL AUTH 3 X.YE,J.ZOU,M.EVANGELISTA
JRNL TITL STRUCTURE-BASED DESIGN AND EVALUATION OF REVERSIBLE KRAS
JRNL TITL 2 G13D INHIBITORS.
JRNL REF ACS MED.CHEM.LETT. V. 15 21 2024
JRNL REFN ISSN 1948-5875
JRNL PMID 38229748
JRNL DOI 10.1021/ACSMEDCHEMLETT.3C00478
REMARK 2
REMARK 2 RESOLUTION. 1.31 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_3936
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.19
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950
REMARK 3 COMPLETENESS FOR RANGE (%) : 60.6
REMARK 3 NUMBER OF REFLECTIONS : 45344
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.180
REMARK 3 R VALUE (WORKING SET) : 0.178
REMARK 3 FREE R VALUE : 0.212
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580
REMARK 3 FREE R VALUE TEST SET COUNT : 2077
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 31.1900 - 3.2400 0.97 4573 246 0.1373 0.1529
REMARK 3 2 3.2300 - 2.5700 0.97 4652 202 0.1575 0.1951
REMARK 3 3 2.5700 - 2.2400 0.97 4672 166 0.1603 0.2155
REMARK 3 4 2.2400 - 2.0400 0.96 4567 223 0.1706 0.2167
REMARK 3 5 2.0400 - 1.8900 0.95 4570 223 0.1853 0.2306
REMARK 3 6 1.8900 - 1.7800 0.88 4217 149 0.2091 0.2421
REMARK 3 7 1.7800 - 1.6900 0.74 3508 189 0.2202 0.2711
REMARK 3 8 1.6900 - 1.6200 0.65 3102 151 0.2610 0.3148
REMARK 3 9 1.6200 - 1.5600 0.59 2787 151 0.2802 0.2370
REMARK 3 10 1.5600 - 1.5000 0.51 2420 143 0.2960 0.3653
REMARK 3 11 1.5000 - 1.4600 0.41 1955 124 0.3684 0.3704
REMARK 3 12 1.4600 - 1.4100 0.28 1354 63 0.4344 0.4715
REMARK 3 13 1.4100 - 1.3800 0.15 714 37 0.5729 0.7859
REMARK 3 14 1.3800 - 1.3400 0.03 148 9 0.7496 0.9744
REMARK 3 15 1.3400 - 1.3100 0.01 28 1 0.7178 0.0167
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.790
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 2963
REMARK 3 ANGLE : 0.988 4037
REMARK 3 CHIRALITY : 0.071 434
REMARK 3 PLANARITY : 0.004 507
REMARK 3 DIHEDRAL : 23.803 1093
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 10
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 57 )
REMARK 3 ORIGIN FOR THE GROUP (A): 13.4710 -1.8384 -20.6209
REMARK 3 T TENSOR
REMARK 3 T11: 0.1198 T22: 0.1498
REMARK 3 T33: 0.1581 T12: 0.0145
REMARK 3 T13: 0.0040 T23: 0.0324
REMARK 3 L TENSOR
REMARK 3 L11: 0.2082 L22: 0.5926
REMARK 3 L33: 0.8051 L12: 0.1272
REMARK 3 L13: -0.0337 L23: 0.0161
REMARK 3 S TENSOR
REMARK 3 S11: 0.0769 S12: 0.0031 S13: 0.0436
REMARK 3 S21: -0.0998 S22: -0.1727 S23: -0.1822
REMARK 3 S31: 0.0349 S32: 0.2355 S33: -0.0012
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 126 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.6533 -4.1029 -8.2221
REMARK 3 T TENSOR
REMARK 3 T11: 0.0907 T22: 0.0814
REMARK 3 T33: 0.0660 T12: -0.0242
REMARK 3 T13: 0.0038 T23: -0.0077
REMARK 3 L TENSOR
REMARK 3 L11: 0.6351 L22: 1.5651
REMARK 3 L33: 1.7842 L12: 0.0503
REMARK 3 L13: -0.4472 L23: -0.7629
REMARK 3 S TENSOR
REMARK 3 S11: 0.0885 S12: -0.1239 S13: 0.0002
REMARK 3 S21: 0.2003 S22: -0.1232 S23: -0.0526
REMARK 3 S31: -0.1712 S32: 0.1033 S33: 0.0063
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 168 )
REMARK 3 ORIGIN FOR THE GROUP (A): 2.9715 6.8251 -14.1799
REMARK 3 T TENSOR
REMARK 3 T11: 0.1549 T22: 0.1219
REMARK 3 T33: 0.1361 T12: 0.0062
REMARK 3 T13: 0.0110 T23: -0.0165
REMARK 3 L TENSOR
REMARK 3 L11: 0.8010 L22: 0.8126
REMARK 3 L33: 1.2298 L12: -0.2693
REMARK 3 L13: -0.2445 L23: -0.4936
REMARK 3 S TENSOR
REMARK 3 S11: 0.0787 S12: -0.0836 S13: 0.1256
REMARK 3 S21: 0.0579 S22: -0.0536 S23: -0.0166
REMARK 3 S31: -0.3231 S32: -0.0143 S33: 0.0001
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 37 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.4193 -28.6635 -34.1912
REMARK 3 T TENSOR
REMARK 3 T11: 0.0971 T22: 0.1087
REMARK 3 T33: 0.1187 T12: 0.0002
REMARK 3 T13: 0.0056 T23: -0.0041
REMARK 3 L TENSOR
REMARK 3 L11: 0.3901 L22: 0.4648
REMARK 3 L33: 1.2171 L12: -0.4214
REMARK 3 L13: 0.1743 L23: -0.1083
REMARK 3 S TENSOR
REMARK 3 S11: -0.0838 S12: 0.0042 S13: -0.0976
REMARK 3 S21: 0.0895 S22: 0.0339 S23: 0.1126
REMARK 3 S31: 0.1704 S32: -0.0831 S33: -0.0024
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 57 )
REMARK 3 ORIGIN FOR THE GROUP (A): -1.2812 -28.4216 -33.9922
REMARK 3 T TENSOR
REMARK 3 T11: 0.1359 T22: 0.1361
REMARK 3 T33: 0.1962 T12: 0.0132
REMARK 3 T13: 0.0217 T23: 0.0250
REMARK 3 L TENSOR
REMARK 3 L11: 0.3475 L22: 0.1601
REMARK 3 L33: 0.5107 L12: 0.0406
REMARK 3 L13: -0.1237 L23: -0.0320
REMARK 3 S TENSOR
REMARK 3 S11: 0.0410 S12: 0.0470 S13: -0.3560
REMARK 3 S21: 0.0516 S22: 0.0150 S23: 0.2464
REMARK 3 S31: -0.0289 S32: -0.1262 S33: -0.0000
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 74 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.4607 -35.8473 -49.5611
REMARK 3 T TENSOR
REMARK 3 T11: 0.1723 T22: 0.1153
REMARK 3 T33: 0.1276 T12: -0.0249
REMARK 3 T13: -0.0018 T23: -0.0486
REMARK 3 L TENSOR
REMARK 3 L11: 1.9171 L22: 0.0847
REMARK 3 L33: 2.1618 L12: 0.1234
REMARK 3 L13: -1.1759 L23: 0.2574
REMARK 3 S TENSOR
REMARK 3 S11: -0.1720 S12: 0.1094 S13: -0.3333
REMARK 3 S21: 0.0312 S22: 0.0382 S23: 0.1527
REMARK 3 S31: 0.5983 S32: -0.0824 S33: -0.4486
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 116 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.9635 -21.6332 -48.4115
REMARK 3 T TENSOR
REMARK 3 T11: 0.1124 T22: 0.1280
REMARK 3 T33: 0.1218 T12: -0.0199
REMARK 3 T13: -0.0089 T23: -0.0049
REMARK 3 L TENSOR
REMARK 3 L11: 0.2598 L22: 0.9495
REMARK 3 L33: 0.8943 L12: -0.2194
REMARK 3 L13: -0.3642 L23: 0.3218
REMARK 3 S TENSOR
REMARK 3 S11: -0.0282 S12: 0.0855 S13: -0.0894
REMARK 3 S21: -0.1405 S22: -0.0050 S23: 0.0196
REMARK 3 S31: -0.0113 S32: -0.0388 S33: -0.0002
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 137 )
REMARK 3 ORIGIN FOR THE GROUP (A): 15.8589 -10.4956 -41.5447
REMARK 3 T TENSOR
REMARK 3 T11: 0.1755 T22: 0.1022
REMARK 3 T33: 0.1269 T12: -0.0350
REMARK 3 T13: -0.0319 T23: 0.0009
REMARK 3 L TENSOR
REMARK 3 L11: -0.0001 L22: 0.1964
REMARK 3 L33: 0.5402 L12: -0.0032
REMARK 3 L13: 0.0128 L23: -0.2342
REMARK 3 S TENSOR
REMARK 3 S11: -0.1488 S12: 0.0393 S13: 0.0422
REMARK 3 S21: 0.1300 S22: 0.1022 S23: -0.2009
REMARK 3 S31: -0.4804 S32: 0.1310 S33: -0.0028
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 151 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.0597 -15.4213 -34.6859
REMARK 3 T TENSOR
REMARK 3 T11: 0.1246 T22: 0.1089
REMARK 3 T33: 0.1128 T12: 0.0023
REMARK 3 T13: -0.0076 T23: 0.0036
REMARK 3 L TENSOR
REMARK 3 L11: 0.2654 L22: 0.1644
REMARK 3 L33: 0.1698 L12: -0.0346
REMARK 3 L13: -0.1173 L23: 0.0735
REMARK 3 S TENSOR
REMARK 3 S11: -0.0929 S12: 0.0607 S13: 0.1263
REMARK 3 S21: 0.0860 S22: 0.0108 S23: 0.0143
REMARK 3 S31: -0.1166 S32: 0.0537 S33: 0.0001
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 168 )
REMARK 3 ORIGIN FOR THE GROUP (A): -2.2076 -19.2237 -40.6404
REMARK 3 T TENSOR
REMARK 3 T11: 0.0910 T22: 0.1772
REMARK 3 T33: 0.1507 T12: -0.0044
REMARK 3 T13: -0.0210 T23: -0.0016
REMARK 3 L TENSOR
REMARK 3 L11: 0.0526 L22: 0.5806
REMARK 3 L33: 1.2138 L12: -0.0921
REMARK 3 L13: 0.0127 L23: -0.1767
REMARK 3 S TENSOR
REMARK 3 S11: -0.0260 S12: 0.0671 S13: -0.1937
REMARK 3 S21: 0.0079 S22: 0.1306 S23: 0.2881
REMARK 3 S31: -0.1996 S32: -0.4235 S33: 0.0240
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8UN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-23.
REMARK 100 THE DEPOSITION ID IS D_1000278402.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-MAR-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-B
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979110
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45350
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310
REMARK 200 RESOLUTION RANGE LOW (A) : 31.190
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 38.0
REMARK 200 DATA REDUNDANCY : 3.000
REMARK 200 R MERGE (I) : 0.04100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 1.46300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4TQA
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 41.54
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 30% W/V
REMARK 280 PEG 5,000MME, EVAPORATION, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY B 0
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 590 O HOH A 622 1.84
REMARK 500 O HOH A 546 O HOH A 577 1.87
REMARK 500 O HOH A 508 O HOH A 541 1.92
REMARK 500 OG SER A 122 O HOH A 401 1.93
REMARK 500 O HOH B 484 O HOH B 490 1.93
REMARK 500 OE2 GLU A 3 O HOH A 402 1.98
REMARK 500 O HOH B 440 O HOH B 501 2.02
REMARK 500 O HOH B 378 O HOH B 510 2.03
REMARK 500 O HOH B 330 O HOH B 443 2.03
REMARK 500 OD2 ASP B 105 O HOH B 301 2.04
REMARK 500 OD2 ASP B 132 O HOH B 302 2.06
REMARK 500 O HOH B 373 O HOH B 477 2.08
REMARK 500 O HOH B 435 O HOH B 501 2.08
REMARK 500 O HOH B 492 O HOH B 503 2.09
REMARK 500 OE1 GLN A 70 O HOH A 403 2.10
REMARK 500 NE2 GLN A 61 O HOH A 404 2.10
REMARK 500 O HOH B 372 O HOH B 390 2.10
REMARK 500 O HOH A 574 O HOH A 594 2.11
REMARK 500 O HOH A 512 O HOH A 543 2.11
REMARK 500 O HOH A 452 O HOH A 625 2.12
REMARK 500 O HOH A 528 O HOH A 569 2.14
REMARK 500 O HOH A 518 O HOH A 618 2.14
REMARK 500 CD2 LEU A 79 CG2 VAL A 112 2.17
REMARK 500 O HOH B 460 O HOH B 489 2.18
REMARK 500 O HOH B 484 O HOH B 495 2.19
REMARK 500 O2 GOL A 302 O HOH A 405 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 576 O HOH B 473 1666 1.95
REMARK 500 O HOH A 415 O HOH B 462 1565 2.05
REMARK 500 O HOH A 437 O HOH A 596 1655 2.11
REMARK 500 O HOH A 593 O HOH B 423 1566 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 ARG A 135 C ARG A 135 O 0.118
REMARK 500 LYS B 5 C LYS B 5 O 0.120
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 33 122.97 -38.98
REMARK 500 ARG A 149 -1.40 85.31
REMARK 500 SER B 122 43.54 -84.47
REMARK 500 ARG B 149 -1.08 87.66
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 304 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 GDP A 303 O1B 95.9
REMARK 620 3 HOH A 419 O 89.1 87.8
REMARK 620 4 HOH A 422 O 85.4 95.8 173.7
REMARK 620 5 HOH A 435 O 84.6 170.9 83.1 93.3
REMARK 620 6 HOH A 461 O 174.2 87.2 95.9 89.5 93.1
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 202 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER B 17 OG
REMARK 620 2 GDP B 201 O2B 95.0
REMARK 620 3 HOH B 323 O 91.6 89.0
REMARK 620 4 HOH B 326 O 83.8 93.9 174.8
REMARK 620 5 HOH B 336 O 88.0 173.5 85.1 92.2
REMARK 620 6 HOH B 354 O 174.4 85.7 94.0 90.6 91.9
REMARK 620 N 1 2 3 4 5
DBREF 8UN5 A 2 168 UNP P01116 RASK_HUMAN 2 168
DBREF 8UN5 B 2 168 UNP P01116 RASK_HUMAN 2 168
SEQADV 8UN5 GLY A 0 UNP P01116 EXPRESSION TAG
SEQADV 8UN5 SER A 1 UNP P01116 EXPRESSION TAG
SEQADV 8UN5 ASP A 13 UNP P01116 GLY 13 VARIANT
SEQADV 8UN5 GLY B 0 UNP P01116 EXPRESSION TAG
SEQADV 8UN5 SER B 1 UNP P01116 EXPRESSION TAG
SEQADV 8UN5 ASP B 13 UNP P01116 GLY 13 VARIANT
SEQRES 1 A 169 GLY SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 A 169 ASP VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 A 169 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 A 169 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 A 169 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 A 169 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 A 169 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE
SEQRES 8 A 169 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 A 169 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 A 169 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN
SEQRES 11 A 169 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE
SEQRES 12 A 169 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA
SEQRES 13 A 169 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU
SEQRES 1 B 169 GLY SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 B 169 ASP VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 B 169 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 B 169 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 B 169 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 B 169 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 B 169 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE
SEQRES 8 B 169 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 B 169 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 B 169 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN
SEQRES 11 B 169 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE
SEQRES 12 B 169 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA
SEQRES 13 B 169 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU
HET GOL A 301 14
HET GOL A 302 14
HET GDP A 303 28
HET MG A 304 1
HET XQ6 A 305 99
HET GDP B 201 28
HET MG B 202 1
HET XQ6 B 203 99
HETNAM GOL GLYCEROL
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
HETNAM MG MAGNESIUM ION
HETNAM XQ6 (2E)-1-{(3S)-4-[(7M)-7-[6-AMINO-4-METHYL-3-
HETNAM 2 XQ6 (TRIFLUOROMETHYL)PYRIDIN-2-YL]-6-CHLORO-8-FLUORO-2-
HETNAM 3 XQ6 {[(4R,7AS)-2-METHYLIDENETETRAHYDRO-1H-PYRROLIZIN-
HETNAM 4 XQ6 7A(5H)-YL]METHOXY}QUINAZOLIN-4-YL]-3-METHYLPIPERAZIN-
HETNAM 5 XQ6 1-YL}-3-(1,2,3,4-TETRAHYDROISOQUINOLIN-8-YL)PROP-2-EN-
HETNAM 6 XQ6 1-ONE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 GOL 2(C3 H8 O3)
FORMUL 5 GDP 2(C10 H15 N5 O11 P2)
FORMUL 6 MG 2(MG 2+)
FORMUL 7 XQ6 2(C41 H43 CL F4 N8 O2)
FORMUL 11 HOH *457(H2 O)
HELIX 1 AA1 GLY A 15 ASN A 26 1 12
HELIX 2 AA2 SER A 65 THR A 74 1 10
HELIX 3 AA3 ASN A 86 ASP A 92 1 7
HELIX 4 AA4 ASP A 92 ASP A 105 1 14
HELIX 5 AA5 ASP A 126 GLY A 138 1 13
HELIX 6 AA6 GLY A 151 GLU A 168 1 18
HELIX 7 AA7 GLY B 15 ASN B 26 1 12
HELIX 8 AA8 SER B 65 THR B 74 1 10
HELIX 9 AA9 ASN B 86 ASP B 92 1 7
HELIX 10 AB1 ASP B 92 ASP B 105 1 14
HELIX 11 AB2 ASP B 126 GLY B 138 1 13
HELIX 12 AB3 GLY B 151 GLU B 168 1 18
SHEET 1 AA1 6 ASP A 38 ILE A 46 0
SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44
SHEET 3 AA1 6 THR A 2 GLY A 10 1 N VAL A 8 O LEU A 56
SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9
SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82
SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113
SHEET 1 AA2 6 ASP B 38 ILE B 46 0
SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40
SHEET 3 AA2 6 THR B 2 GLY B 10 1 N VAL B 8 O LEU B 56
SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9
SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82
SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113
LINK OG SER A 17 MG MG A 304 1555 1555 2.19
LINK O1B GDP A 303 MG MG A 304 1555 1555 1.99
LINK MG MG A 304 O HOH A 419 1555 1555 2.09
LINK MG MG A 304 O HOH A 422 1555 1555 2.14
LINK MG MG A 304 O HOH A 435 1555 1555 2.22
LINK MG MG A 304 O HOH A 461 1555 1555 2.16
LINK OG SER B 17 MG MG B 202 1555 1555 2.12
LINK O2B GDP B 201 MG MG B 202 1555 1555 2.11
LINK MG MG B 202 O HOH B 323 1555 1555 2.09
LINK MG MG B 202 O HOH B 326 1555 1555 2.13
LINK MG MG B 202 O HOH B 336 1555 1555 2.17
LINK MG MG B 202 O HOH B 354 1555 1555 2.15
CRYST1 38.960 41.620 55.550 90.17 91.35 116.28 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025667 0.012674 0.000796 0.00000
SCALE2 0.000000 0.026797 0.000401 0.00000
SCALE3 0.000000 0.000000 0.018009 0.00000