HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-OCT-23 8UOJ TITLE CRYSTAL STRUCTURE OF HUMAN NUAK1-MARK3 KINASE DOMAIN CHIMERA BOUND TITLE 2 WITH AZEPANE (R)-#50 SMALL MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP/MICROTUBULE AFFINITY-REGULATING KINASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-TAK1,CTAK1,CDC25C-ASSOCIATED PROTEIN KINASE 1,ELKL MOTIF COMPND 5 KINASE 2,EMK-2,PROTEIN KINASE STK10,SER/THR PROTEIN KINASE PAR-1,PAR- COMPND 6 1A,SERINE/THREONINE-PROTEIN KINASE P78; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MARK3, CTAK1, EMK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, SERINE/THREONINE-PROTEIN KINASE, NUAK1, MARK3, TRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.L.DELKER,J.ABENDROTH,S.J.MAYCLIN REVDAT 1 06-NOV-24 8UOJ 0 JRNL AUTH S.L.DELKER,J.ABENDROTH JRNL TITL DISCOVERY OF UCB9386 A POTENT, SELECTIVE AND BRAIN-PENETRANT JRNL TITL 2 NUAK1 INHIBITOR SUITABLE FOR IN VIVO PHARMACOLOGICAL STUDIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3409 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.660 REMARK 3 FREE R VALUE TEST SET COUNT : 2068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8700 - 3.9453 1.00 3880 140 0.1457 0.1643 REMARK 3 2 3.9453 - 3.1317 1.00 3704 148 0.1408 0.1565 REMARK 3 3 3.1317 - 2.7358 1.00 3652 136 0.1586 0.1716 REMARK 3 4 2.7358 - 2.4857 1.00 3651 129 0.1663 0.1929 REMARK 3 5 2.4857 - 2.3075 1.00 3657 132 0.1650 0.2180 REMARK 3 6 2.3075 - 2.1715 1.00 3621 136 0.1602 0.2146 REMARK 3 7 2.1715 - 2.0627 1.00 3611 134 0.1626 0.1848 REMARK 3 8 2.0627 - 1.9730 1.00 3586 140 0.1659 0.2022 REMARK 3 9 1.9730 - 1.8970 1.00 3627 137 0.1677 0.2073 REMARK 3 10 1.8970 - 1.8315 1.00 3616 126 0.1783 0.2020 REMARK 3 11 1.8315 - 1.7743 1.00 3578 143 0.1834 0.2149 REMARK 3 12 1.7743 - 1.7235 1.00 3592 133 0.1840 0.2308 REMARK 3 13 1.7235 - 1.6782 1.00 3565 138 0.2012 0.2340 REMARK 3 14 1.6782 - 1.6372 1.00 3599 150 0.2193 0.2555 REMARK 3 15 1.6372 - 1.6000 1.00 3550 146 0.2483 0.2673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.000 2839 REMARK 3 ANGLE : 0.930 3836 REMARK 3 CHIRALITY : 0.060 419 REMARK 3 PLANARITY : 0.000 488 REMARK 3 DIHEDRAL : 16.400 1767 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3724 -44.0628 -14.4248 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.3127 REMARK 3 T33: 0.2634 T12: -0.0450 REMARK 3 T13: 0.0030 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.9992 L22: 2.7693 REMARK 3 L33: 3.0924 L12: -1.1074 REMARK 3 L13: 1.0628 L23: -0.9237 REMARK 3 S TENSOR REMARK 3 S11: -0.0695 S12: -0.2918 S13: -0.1625 REMARK 3 S21: 0.1961 S22: 0.2637 S23: 0.3963 REMARK 3 S31: 0.1825 S32: -0.6255 S33: -0.2028 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2621 -43.1836 -22.2032 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1829 REMARK 3 T33: 0.1814 T12: -0.0162 REMARK 3 T13: -0.0125 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.3521 L22: 1.8597 REMARK 3 L33: 2.1398 L12: -0.2499 REMARK 3 L13: 0.2220 L23: -0.3536 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: 0.0759 S13: -0.1555 REMARK 3 S21: -0.1147 S22: 0.0091 S23: 0.0705 REMARK 3 S31: 0.2084 S32: -0.2392 S33: -0.0582 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9547 -25.0006 -21.1953 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.2049 REMARK 3 T33: 0.1578 T12: 0.0040 REMARK 3 T13: 0.0019 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.7881 L22: 3.0167 REMARK 3 L33: 1.1052 L12: 0.2364 REMARK 3 L13: -0.0079 L23: -0.8120 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.0914 S13: 0.0758 REMARK 3 S21: 0.1971 S22: -0.0282 S23: 0.0755 REMARK 3 S31: -0.0766 S32: -0.0651 S33: 0.0037 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6502 -32.6698 -31.1856 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.2134 REMARK 3 T33: 0.1793 T12: 0.0126 REMARK 3 T13: -0.0049 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.9046 L22: 4.3920 REMARK 3 L33: 4.2653 L12: 0.6658 REMARK 3 L13: 2.1421 L23: -1.2418 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: 0.1476 S13: 0.0172 REMARK 3 S21: -0.2390 S22: 0.0036 S23: 0.3421 REMARK 3 S31: -0.0348 S32: -0.1957 S33: -0.1318 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1739 -20.3617 -35.9617 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.1748 REMARK 3 T33: 0.1586 T12: -0.0180 REMARK 3 T13: 0.0029 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 5.7433 L22: 4.3848 REMARK 3 L33: 1.6392 L12: -0.6792 REMARK 3 L13: 0.6084 L23: -2.1832 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: 0.5024 S13: -0.1955 REMARK 3 S21: -0.3617 S22: -0.0056 S23: -0.0213 REMARK 3 S31: 0.2961 S32: 0.0040 S33: 0.0588 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4904 -10.6663 -34.0135 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1809 REMARK 3 T33: 0.2092 T12: 0.0364 REMARK 3 T13: -0.0033 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 3.3125 L22: 4.1098 REMARK 3 L33: 4.4656 L12: 2.6637 REMARK 3 L13: 2.5457 L23: 1.6876 REMARK 3 S TENSOR REMARK 3 S11: -0.0937 S12: -0.0460 S13: 0.3531 REMARK 3 S21: -0.2031 S22: -0.0212 S23: 0.3623 REMARK 3 S31: -0.2028 S32: -0.4482 S33: 0.1391 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4337 -24.3256 -22.0431 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.2304 REMARK 3 T33: 0.2955 T12: -0.0067 REMARK 3 T13: 0.0116 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.2811 L22: 3.9002 REMARK 3 L33: 2.4773 L12: -0.7583 REMARK 3 L13: 0.4820 L23: -3.0825 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: 0.0207 S13: 0.1529 REMARK 3 S21: 0.0678 S22: -0.2472 S23: -0.5523 REMARK 3 S31: -0.0115 S32: 0.2084 S33: 0.3145 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7162 -46.2285 -11.1214 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2194 REMARK 3 T33: 0.1824 T12: 0.0048 REMARK 3 T13: -0.0248 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.0411 L22: 5.7641 REMARK 3 L33: 6.5582 L12: 0.9787 REMARK 3 L13: 0.9953 L23: -1.2770 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: 0.1258 S13: -0.0435 REMARK 3 S21: -0.1951 S22: 0.0832 S23: -0.1348 REMARK 3 S31: 0.2341 S32: 0.0506 S33: -0.0520 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000276425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UCB MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS BASE / HCL PH 7.5, 200MM REMARK 280 MAGNESIUM CHLORIDE, 10% (W/V) PEG8000; 2.5MM UCB1718758 REMARK 280 (BSI109321), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.91000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.67500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.91000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.67500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.74500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.67500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.74500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C BEZ A 408 LIES ON A SPECIAL POSITION. REMARK 375 C1 BEZ A 408 LIES ON A SPECIAL POSITION. REMARK 375 C4 BEZ A 408 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 ALA A 44 REMARK 465 MET A 45 REMARK 465 GLY A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 GLU A 49 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 720 O HOH A 802 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 704 O HOH A 704 2555 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 59 -141.86 -118.53 REMARK 500 ASN A 66 -132.48 54.13 REMARK 500 ARG A 177 -9.16 78.76 REMARK 500 ASP A 178 50.18 -146.93 REMARK 500 ASP A 314 51.07 -154.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 916 DISTANCE = 6.70 ANGSTROMS DBREF 8UOJ A 48 370 UNP P27448 MARK3_HUMAN 48 370 SEQADV 8UOJ GLY A 43 UNP P27448 EXPRESSION TAG SEQADV 8UOJ ALA A 44 UNP P27448 EXPRESSION TAG SEQADV 8UOJ MET A 45 UNP P27448 EXPRESSION TAG SEQADV 8UOJ GLY A 46 UNP P27448 EXPRESSION TAG SEQADV 8UOJ SER A 47 UNP P27448 EXPRESSION TAG SEQADV 8UOJ LEU A 62 UNP P27448 ILE 62 ENGINEERED MUTATION SEQADV 8UOJ ARG A 72 UNP P27448 LEU 72 ENGINEERED MUTATION SEQADV 8UOJ ILE A 116 UNP P27448 VAL 116 ENGINEERED MUTATION SEQADV 8UOJ LYS A 137 UNP P27448 GLY 137 ENGINEERED MUTATION SEQADV 8UOJ TYR A 141 UNP P27448 PHE 141 ENGINEERED MUTATION SEQADV 8UOJ GLU A 146 UNP P27448 ALA 146 ENGINEERED MUTATION SEQRES 1 A 328 GLY ALA MET GLY SER ASP GLU GLN PRO HIS ILE GLY ASN SEQRES 2 A 328 TYR ARG LEU LEU LYS THR LEU GLY LYS GLY ASN PHE ALA SEQRES 3 A 328 LYS VAL LYS ARG ALA ARG HIS ILE LEU THR GLY ARG GLU SEQRES 4 A 328 VAL ALA ILE LYS ILE ILE ASP LYS THR GLN LEU ASN PRO SEQRES 5 A 328 THR SER LEU GLN LYS LEU PHE ARG GLU VAL ARG ILE MET SEQRES 6 A 328 LYS ILE LEU ASN HIS PRO ASN ILE ILE LYS LEU PHE GLU SEQRES 7 A 328 VAL ILE GLU THR GLU LYS THR LEU TYR LEU ILE MET GLU SEQRES 8 A 328 TYR ALA SER LYS GLY GLU VAL TYR ASP TYR LEU VAL GLU SEQRES 9 A 328 HIS GLY ARG MET LYS GLU LYS GLU ALA ARG SER LYS PHE SEQRES 10 A 328 ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS GLN LYS SEQRES 11 A 328 ARG ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN LEU LEU SEQRES 12 A 328 LEU ASP ALA ASP MET ASN ILE LYS ILE ALA ASP PHE GLY SEQRES 13 A 328 PHE SER ASN GLU PHE THR VAL GLY GLY LYS LEU ASP THR SEQRES 14 A 328 PHE CME GLY SER PRO PRO TYR ALA ALA PRO GLU LEU PHE SEQRES 15 A 328 GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP VAL TRP SEQRES 16 A 328 SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER GLY SER SEQRES 17 A 328 LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU ARG GLU SEQRES 18 A 328 ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE TYR MET SEQRES 19 A 328 SER THR ASP CYS GLU ASN LEU LEU LYS ARG PHE LEU VAL SEQRES 20 A 328 LEU ASN PRO ILE LYS ARG GLY THR LEU GLU GLN ILE MET SEQRES 21 A 328 LYS ASP ARG TRP ILE ASN ALA GLY HIS GLU GLU ASP GLU SEQRES 22 A 328 LEU LYS PRO PHE VAL GLU PRO GLU LEU ASP ILE SER ASP SEQRES 23 A 328 GLN LYS ARG ILE ASP ILE MET VAL GLY MET GLY TYR SER SEQRES 24 A 328 GLN GLU GLU ILE GLN GLU SER LEU SER LYS MET LYS TYR SEQRES 25 A 328 ASP GLU ILE THR ALA THR TYR LEU LEU LEU GLY ARG LYS SEQRES 26 A 328 SER SER GLU MODRES 8UOJ CME A 213 CYS MODIFIED RESIDUE HET CME A 213 10 HET X5I A 401 28 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET CL A 407 1 HET BEZ A 408 9 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM X5I (6M)-4-{[(2R)-AZEPAN-2-YL]METHYL}-6-[(4R)-IMIDAZO[1,2- HETNAM 2 X5I A]PYRIDIN-3-YL]-2H-PYRIDO[3,2-B][1,4]OXAZIN-3(4H)-ONE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM BEZ BENZOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 X5I C21 H23 N5 O2 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 CL CL 1- FORMUL 9 BEZ C7 H6 O2 FORMUL 10 HOH *416(H2 O) HELIX 1 AA1 THR A 90 LEU A 92 5 3 HELIX 2 AA2 ASN A 93 LYS A 108 1 16 HELIX 3 AA3 GLU A 139 GLY A 148 1 10 HELIX 4 AA4 LYS A 151 LYS A 172 1 22 HELIX 5 AA5 LYS A 180 GLU A 182 5 3 HELIX 6 AA6 SER A 200 THR A 204 5 5 HELIX 7 AA7 SER A 215 ALA A 219 5 5 HELIX 8 AA8 ALA A 220 GLN A 225 1 6 HELIX 9 AA9 GLY A 231 GLY A 249 1 19 HELIX 10 AB1 ASN A 257 GLY A 268 1 12 HELIX 11 AB2 SER A 277 LEU A 288 1 12 HELIX 12 AB3 ASN A 291 ARG A 295 5 5 HELIX 13 AB4 THR A 297 MET A 302 1 6 HELIX 14 AB5 ASP A 328 MET A 338 1 11 HELIX 15 AB6 SER A 341 LYS A 351 1 11 HELIX 16 AB7 ASP A 355 GLY A 365 1 11 SHEET 1 AA1 6 HIS A 52 ILE A 53 0 SHEET 2 AA1 6 TYR A 56 GLY A 65 -1 O TYR A 56 N ILE A 53 SHEET 3 AA1 6 ALA A 68 HIS A 75 -1 O VAL A 70 N LEU A 62 SHEET 4 AA1 6 GLU A 81 ASP A 88 -1 O ILE A 86 N LYS A 69 SHEET 5 AA1 6 THR A 127 GLU A 133 -1 O MET A 132 N ALA A 83 SHEET 6 AA1 6 LEU A 118 GLU A 123 -1 N PHE A 119 O ILE A 131 SHEET 1 AA2 2 LEU A 184 LEU A 186 0 SHEET 2 AA2 2 ILE A 192 ILE A 194 -1 O LYS A 193 N LEU A 185 LINK C PHE A 212 N CME A 213 1555 1555 1.33 LINK C CME A 213 N GLY A 214 1555 1555 1.33 CRYST1 45.350 115.490 161.820 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006180 0.00000