HEADER SIGNALING PROTEIN 22-OCT-23 8UPH TITLE PRF STATE OF STIGMATELLA AURANTIACA BACTERIOPHYTOCHROME 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME (LIGHT-REGULATED SIGNAL TRANSDUCTION COMPND 3 HISTIDINE KINASE); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STIGMATELLA AURANTIACA; SOURCE 3 ORGANISM_TAXID: 41; SOURCE 4 GENE: SAMN05444354_11920; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RED LIGHT PHOTORECEPTOR, TWO COMPONENT SYSTEM, SIGNALING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR T.N.MALLA,M.SCHMIDT,E.A.STOJKOVIC REVDAT 2 20-NOV-24 8UPH 1 REMARK REVDAT 1 25-SEP-24 8UPH 0 JRNL AUTH T.N.MALLA,C.HERNANDEZ,S.MUNIYAPPAN,D.MENENDEZ,D.BIZHGA, JRNL AUTH 2 J.H.MENDEZ,P.SCHWANDER,E.A.STOJKOVIC,M.SCHMIDT JRNL TITL PHOTORECEPTION AND SIGNALING IN BACTERIAL PHYTOCHROME JRNL TITL 2 REVEALED BY SINGLE-PARTICLE CRYO-EM. JRNL REF SCI ADV V. 10 Q0653 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 39121216 JRNL DOI 10.1126/SCIADV.ADQ0653 REMARK 2 REMARK 2 RESOLUTION. 4.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.130 REMARK 3 NUMBER OF PARTICLES : 377549 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8UPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278484. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STIGMATELLA AURANTIACA REMARK 245 BACTERIOPHYTOCHROME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5639.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 547 REMARK 465 GLY A 548 REMARK 465 PRO A 549 REMARK 465 GLU A 550 REMARK 465 GLY A 551 REMARK 465 ARG A 552 REMARK 465 GLY A 553 REMARK 465 HIS A 554 REMARK 465 MET A 555 REMARK 465 GLU A 556 REMARK 465 SER A 557 REMARK 465 LEU A 558 REMARK 465 MET A 559 REMARK 465 TRP A 560 REMARK 465 LEU A 561 REMARK 465 ALA A 562 REMARK 465 GLN A 563 REMARK 465 ARG A 564 REMARK 465 SER A 565 REMARK 465 GLY A 566 REMARK 465 ASP A 567 REMARK 465 MET A 568 REMARK 465 LEU A 569 REMARK 465 ASP A 570 REMARK 465 GLY A 571 REMARK 465 LEU A 572 REMARK 465 PHE A 573 REMARK 465 GLU A 574 REMARK 465 TYR A 575 REMARK 465 SER A 576 REMARK 465 ARG A 577 REMARK 465 ALA A 578 REMARK 465 GLY A 579 REMARK 465 ARG A 580 REMARK 465 VAL A 581 REMARK 465 ASP A 582 REMARK 465 LEU A 583 REMARK 465 ALA A 584 REMARK 465 TRP A 585 REMARK 465 GLY A 586 REMARK 465 GLU A 587 REMARK 465 VAL A 588 REMARK 465 ASN A 589 REMARK 465 MET A 590 REMARK 465 GLN A 591 REMARK 465 GLU A 592 REMARK 465 VAL A 593 REMARK 465 VAL A 594 REMARK 465 ASP A 595 REMARK 465 GLU A 596 REMARK 465 VAL A 597 REMARK 465 LEU A 598 REMARK 465 ALA A 599 REMARK 465 THR A 600 REMARK 465 LEU A 601 REMARK 465 SER A 602 REMARK 465 THR A 603 REMARK 465 ARG A 604 REMARK 465 PHE A 605 REMARK 465 GLN A 606 REMARK 465 ALA A 607 REMARK 465 GLU A 608 REMARK 465 LYS A 609 REMARK 465 LEU A 610 REMARK 465 THR A 611 REMARK 465 VAL A 612 REMARK 465 ARG A 613 REMARK 465 MET A 614 REMARK 465 PRO A 615 REMARK 465 ARG A 616 REMARK 465 ARG A 617 REMARK 465 LEU A 618 REMARK 465 PRO A 619 REMARK 465 THR A 620 REMARK 465 VAL A 621 REMARK 465 ARG A 622 REMARK 465 CYS A 623 REMARK 465 ASP A 624 REMARK 465 GLY A 625 REMARK 465 ILE A 626 REMARK 465 ARG A 627 REMARK 465 ILE A 628 REMARK 465 ALA A 629 REMARK 465 GLN A 630 REMARK 465 VAL A 631 REMARK 465 TRP A 632 REMARK 465 ALA A 633 REMARK 465 ASN A 634 REMARK 465 LEU A 635 REMARK 465 LEU A 636 REMARK 465 VAL A 637 REMARK 465 ASN A 638 REMARK 465 ALA A 639 REMARK 465 ALA A 640 REMARK 465 LYS A 641 REMARK 465 TYR A 642 REMARK 465 GLN A 643 REMARK 465 GLU A 644 REMARK 465 GLY A 645 REMARK 465 PRO A 646 REMARK 465 GLU A 647 REMARK 465 ARG A 648 REMARK 465 TRP A 649 REMARK 465 VAL A 650 REMARK 465 GLU A 651 REMARK 465 ALA A 652 REMARK 465 GLY A 653 REMARK 465 PHE A 654 REMARK 465 HIS A 655 REMARK 465 GLY A 656 REMARK 465 PRO A 657 REMARK 465 GLY A 658 REMARK 465 GLU A 659 REMARK 465 PRO A 660 REMARK 465 ARG A 661 REMARK 465 PRO A 662 REMARK 465 GLY A 663 REMARK 465 ALA A 664 REMARK 465 ALA A 665 REMARK 465 GLY A 666 REMARK 465 ARG A 667 REMARK 465 TYR A 668 REMARK 465 ALA A 669 REMARK 465 SER A 670 REMARK 465 ALA A 671 REMARK 465 TYR A 672 REMARK 465 VAL A 673 REMARK 465 PHE A 674 REMARK 465 TYR A 675 REMARK 465 VAL A 676 REMARK 465 LYS A 677 REMARK 465 ASP A 678 REMARK 465 PRO A 679 REMARK 465 GLY A 680 REMARK 465 ILE A 681 REMARK 465 GLY A 682 REMARK 465 ILE A 683 REMARK 465 ALA A 684 REMARK 465 PRO A 685 REMARK 465 PRO A 686 REMARK 465 PHE A 687 REMARK 465 HIS A 688 REMARK 465 GLU A 689 REMARK 465 ALA A 690 REMARK 465 ILE A 691 REMARK 465 PHE A 692 REMARK 465 GLU A 693 REMARK 465 MET A 694 REMARK 465 PHE A 695 REMARK 465 ARG A 696 REMARK 465 ARG A 697 REMARK 465 LEU A 698 REMARK 465 HIS A 699 REMARK 465 SER A 700 REMARK 465 ALA A 701 REMARK 465 LYS A 702 REMARK 465 ALA A 703 REMARK 465 TYR A 704 REMARK 465 GLY A 705 REMARK 465 GLY A 706 REMARK 465 GLY A 707 REMARK 465 THR A 708 REMARK 465 GLY A 709 REMARK 465 VAL A 710 REMARK 465 GLY A 711 REMARK 465 LEU A 712 REMARK 465 ALA A 713 REMARK 465 ILE A 714 REMARK 465 ALA A 715 REMARK 465 ARG A 716 REMARK 465 ARG A 717 REMARK 465 LEU A 718 REMARK 465 VAL A 719 REMARK 465 GLN A 720 REMARK 465 LEU A 721 REMARK 465 HIS A 722 REMARK 465 GLY A 723 REMARK 465 GLY A 724 REMARK 465 ALA A 725 REMARK 465 LEU A 726 REMARK 465 TRP A 727 REMARK 465 VAL A 728 REMARK 465 ASP A 729 REMARK 465 SER A 730 REMARK 465 ALA A 731 REMARK 465 PRO A 732 REMARK 465 LYS A 733 REMARK 465 GLN A 734 REMARK 465 GLY A 735 REMARK 465 ALA A 736 REMARK 465 THR A 737 REMARK 465 PHE A 738 REMARK 465 TYR A 739 REMARK 465 PHE A 740 REMARK 465 THR A 741 REMARK 465 LEU A 742 REMARK 465 GLY A 743 REMARK 465 ARG A 744 REMARK 465 GLY A 745 REMARK 465 PRO A 746 REMARK 465 GLY A 747 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PRO B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 525 REMARK 465 LYS B 526 REMARK 465 GLU B 527 REMARK 465 PRO B 528 REMARK 465 LEU B 529 REMARK 465 ARG B 530 REMARK 465 GLY B 531 REMARK 465 ILE B 532 REMARK 465 GLN B 533 REMARK 465 GLN B 534 REMARK 465 TYR B 535 REMARK 465 ALA B 536 REMARK 465 GLY B 537 REMARK 465 PHE B 538 REMARK 465 VAL B 539 REMARK 465 MET B 540 REMARK 465 GLU B 541 REMARK 465 ASP B 542 REMARK 465 TYR B 543 REMARK 465 HIS B 544 REMARK 465 GLY B 545 REMARK 465 ALA B 546 REMARK 465 LEU B 547 REMARK 465 GLY B 548 REMARK 465 PRO B 549 REMARK 465 GLU B 550 REMARK 465 GLY B 551 REMARK 465 ARG B 552 REMARK 465 GLY B 553 REMARK 465 HIS B 554 REMARK 465 MET B 555 REMARK 465 GLU B 556 REMARK 465 SER B 557 REMARK 465 LEU B 558 REMARK 465 MET B 559 REMARK 465 TRP B 560 REMARK 465 LEU B 561 REMARK 465 ALA B 562 REMARK 465 GLN B 563 REMARK 465 ARG B 564 REMARK 465 SER B 565 REMARK 465 GLY B 566 REMARK 465 ASP B 567 REMARK 465 MET B 568 REMARK 465 LEU B 569 REMARK 465 ASP B 570 REMARK 465 GLY B 571 REMARK 465 LEU B 572 REMARK 465 PHE B 573 REMARK 465 GLU B 574 REMARK 465 TYR B 575 REMARK 465 SER B 576 REMARK 465 ARG B 577 REMARK 465 ALA B 578 REMARK 465 GLY B 579 REMARK 465 ARG B 580 REMARK 465 VAL B 581 REMARK 465 ASP B 582 REMARK 465 LEU B 583 REMARK 465 ALA B 584 REMARK 465 TRP B 585 REMARK 465 GLY B 586 REMARK 465 GLU B 587 REMARK 465 VAL B 588 REMARK 465 ASN B 589 REMARK 465 MET B 590 REMARK 465 GLN B 591 REMARK 465 GLU B 592 REMARK 465 VAL B 593 REMARK 465 VAL B 594 REMARK 465 ASP B 595 REMARK 465 GLU B 596 REMARK 465 VAL B 597 REMARK 465 LEU B 598 REMARK 465 ALA B 599 REMARK 465 THR B 600 REMARK 465 LEU B 601 REMARK 465 SER B 602 REMARK 465 THR B 603 REMARK 465 ARG B 604 REMARK 465 PHE B 605 REMARK 465 GLN B 606 REMARK 465 ALA B 607 REMARK 465 GLU B 608 REMARK 465 LYS B 609 REMARK 465 LEU B 610 REMARK 465 THR B 611 REMARK 465 VAL B 612 REMARK 465 ARG B 613 REMARK 465 MET B 614 REMARK 465 PRO B 615 REMARK 465 ARG B 616 REMARK 465 ARG B 617 REMARK 465 LEU B 618 REMARK 465 PRO B 619 REMARK 465 THR B 620 REMARK 465 VAL B 621 REMARK 465 ARG B 622 REMARK 465 CYS B 623 REMARK 465 ASP B 624 REMARK 465 GLY B 625 REMARK 465 ILE B 626 REMARK 465 ARG B 627 REMARK 465 ILE B 628 REMARK 465 ALA B 629 REMARK 465 GLN B 630 REMARK 465 VAL B 631 REMARK 465 TRP B 632 REMARK 465 ALA B 633 REMARK 465 ASN B 634 REMARK 465 LEU B 635 REMARK 465 LEU B 636 REMARK 465 VAL B 637 REMARK 465 ASN B 638 REMARK 465 ALA B 639 REMARK 465 ALA B 640 REMARK 465 LYS B 641 REMARK 465 TYR B 642 REMARK 465 GLN B 643 REMARK 465 GLU B 644 REMARK 465 GLY B 645 REMARK 465 PRO B 646 REMARK 465 GLU B 647 REMARK 465 ARG B 648 REMARK 465 TRP B 649 REMARK 465 VAL B 650 REMARK 465 GLU B 651 REMARK 465 ALA B 652 REMARK 465 GLY B 653 REMARK 465 PHE B 654 REMARK 465 HIS B 655 REMARK 465 GLY B 656 REMARK 465 PRO B 657 REMARK 465 GLY B 658 REMARK 465 GLU B 659 REMARK 465 PRO B 660 REMARK 465 ARG B 661 REMARK 465 PRO B 662 REMARK 465 GLY B 663 REMARK 465 ALA B 664 REMARK 465 ALA B 665 REMARK 465 GLY B 666 REMARK 465 ARG B 667 REMARK 465 TYR B 668 REMARK 465 ALA B 669 REMARK 465 SER B 670 REMARK 465 ALA B 671 REMARK 465 TYR B 672 REMARK 465 VAL B 673 REMARK 465 PHE B 674 REMARK 465 TYR B 675 REMARK 465 VAL B 676 REMARK 465 LYS B 677 REMARK 465 ASP B 678 REMARK 465 PRO B 679 REMARK 465 GLY B 680 REMARK 465 ILE B 681 REMARK 465 GLY B 682 REMARK 465 ILE B 683 REMARK 465 ALA B 684 REMARK 465 PRO B 685 REMARK 465 PRO B 686 REMARK 465 PHE B 687 REMARK 465 HIS B 688 REMARK 465 GLU B 689 REMARK 465 ALA B 690 REMARK 465 ILE B 691 REMARK 465 PHE B 692 REMARK 465 GLU B 693 REMARK 465 MET B 694 REMARK 465 PHE B 695 REMARK 465 ARG B 696 REMARK 465 ARG B 697 REMARK 465 LEU B 698 REMARK 465 HIS B 699 REMARK 465 SER B 700 REMARK 465 ALA B 701 REMARK 465 LYS B 702 REMARK 465 ALA B 703 REMARK 465 TYR B 704 REMARK 465 GLY B 705 REMARK 465 GLY B 706 REMARK 465 GLY B 707 REMARK 465 THR B 708 REMARK 465 GLY B 709 REMARK 465 VAL B 710 REMARK 465 GLY B 711 REMARK 465 LEU B 712 REMARK 465 ALA B 713 REMARK 465 ILE B 714 REMARK 465 ALA B 715 REMARK 465 ARG B 716 REMARK 465 ARG B 717 REMARK 465 LEU B 718 REMARK 465 VAL B 719 REMARK 465 GLN B 720 REMARK 465 LEU B 721 REMARK 465 HIS B 722 REMARK 465 GLY B 723 REMARK 465 GLY B 724 REMARK 465 ALA B 725 REMARK 465 LEU B 726 REMARK 465 TRP B 727 REMARK 465 VAL B 728 REMARK 465 ASP B 729 REMARK 465 SER B 730 REMARK 465 ALA B 731 REMARK 465 PRO B 732 REMARK 465 LYS B 733 REMARK 465 GLN B 734 REMARK 465 GLY B 735 REMARK 465 ALA B 736 REMARK 465 THR B 737 REMARK 465 PHE B 738 REMARK 465 TYR B 739 REMARK 465 PHE B 740 REMARK 465 THR B 741 REMARK 465 LEU B 742 REMARK 465 GLY B 743 REMARK 465 ARG B 744 REMARK 465 GLY B 745 REMARK 465 PRO B 746 REMARK 465 GLY B 747 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 61.95 61.55 REMARK 500 GLN A 74 34.11 -99.59 REMARK 500 SER A 130 154.33 63.11 REMARK 500 THR A 387 -31.85 -131.21 REMARK 500 ARG A 404 53.51 -91.47 REMARK 500 SER A 420 -132.57 71.80 REMARK 500 GLU A 469 59.21 38.91 REMARK 500 LEU B 132 -2.55 69.40 REMARK 500 ASP B 265 54.40 32.95 REMARK 500 LEU B 280 116.34 -160.16 REMARK 500 PRO B 418 -171.38 -66.48 REMARK 500 ALA B 419 -7.76 -53.74 REMARK 500 LYS B 443 75.11 -115.39 REMARK 500 GLU B 469 47.67 38.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-42448 RELATED DB: EMDB REMARK 900 PR STATE OF STIGMATELLA AURANTIACA BACTERIOPHYTOCHROME 2 DBREF1 8UPH A 1 747 UNP A0A1H7ZJA8_STIAU DBREF2 8UPH A A0A1H7ZJA8 1 747 DBREF1 8UPH B 1 747 UNP A0A1H7ZJA8_STIAU DBREF2 8UPH B A0A1H7ZJA8 1 747 SEQRES 1 A 747 MET ARG PRO SER VAL SER GLU LEU GLU LEU SER GLN CYS SEQRES 2 A 747 ASP ARG GLU PRO ILE HIS LEU LEU GLY GLY ILE GLN ALA SEQRES 3 A 747 TYR GLY VAL LEU LEU ALA PHE ARG GLY PRO ASP ARG ARG SEQRES 4 A 747 LEU GLU VAL VAL SER ALA ASN THR GLN ALA LEU LEU GLY SEQRES 5 A 747 ARG PRO PRO GLU ALA LEU LEU GLY LYS THR ALA ALA GLN SEQRES 6 A 747 VAL LEU PRO ALA GLU LEU TRP ALA GLN TRP GLU LEU LEU SEQRES 7 A 747 SER ALA ARG GLY ALA LEU ARG VAL ALA LEU PRO SER GLY SEQRES 8 A 747 PRO TYR ARG ALA LEU LEU HIS GLU SER ASP GLY LEU THR SEQRES 9 A 747 VAL LEU GLU LEU GLU PRO ALA GLU LEU GLN PRO ASP MET SEQRES 10 A 747 GLU GLU THR ALA LEU GLU LEU VAL ARG ARG LEU VAL SER SEQRES 11 A 747 PRO LEU ALA GLY ALA LYS GLY THR ARG GLU LEU LEU GLN SEQRES 12 A 747 THR ALA ALA ASN THR VAL ARG ALA LEU THR GLY PHE ASP SEQRES 13 A 747 ARG VAL MET VAL TYR ARG PHE ASP ALA ASP TRP HIS GLY SEQRES 14 A 747 GLU VAL LEU ALA GLU SER LYS ARG GLU GLY MET ASP GLY SEQRES 15 A 747 PHE LEU GLY MET HIS PHE PRO ALA THR ASP ILE PRO VAL SEQRES 16 A 747 GLN ALA ARG ALA LEU TYR THR ARG ASN PRO LEU ARG LEU SEQRES 17 A 747 ILE ALA ASN ALA ARG ALA ARG PRO VAL PRO LEU VAL PRO SEQRES 18 A 747 SER VAL VAL PRO GLU LEU GLY ARG PRO LEU ASP LEU SER SEQRES 19 A 747 GLY SER ALA LEU ARG SER VAL SER PRO ILE HIS LEU GLU SEQRES 20 A 747 TYR LEU ARG ASN MET GLY VAL GLU ALA SER PHE SER LEU SEQRES 21 A 747 SER LEU LEU LYS ASP GLY ALA LEU TRP GLY LEU ILE ALA SEQRES 22 A 747 CYS HIS HIS LEU ALA PRO LEU HIS LEU SER TYR GLU ARG SEQRES 23 A 747 ARG ARG ALA CYS GLU VAL LEU THR GLN LEU LEU ALA LEU SEQRES 24 A 747 GLN LEU SER SER GLU GLU ARG ALA ALA GLU ALA ALA GLU SEQRES 25 A 747 ASP SER HIS ARG ALA ALA LEU LEU GLY PRO LEU ALA THR SEQRES 26 A 747 SER LEU GLY ALA GLY GLY THR LEU GLU GLU ALA LEU ALA SEQRES 27 A 747 LYS ASP GLY ALA ARG VAL LEU GLU LEU THR GLY ALA THR SEQRES 28 A 747 GLY ALA ALA LEU LEU LEU GLY GLY GLU PRO LEU LEU VAL SEQRES 29 A 747 GLY ARG THR PRO SER MET ASP GLU VAL GLU ALA LEU ALA SEQRES 30 A 747 ALA TRP LEU ALA PRO GLN PRO PHE GLN THR SER PHE HIS SEQRES 31 A 747 THR GLU ARG LEU GLY SER LEU TYR PRO PRO LEU ALA ALA SEQRES 32 A 747 ARG ALA ASP VAL ALA ALA GLY LEU LEU ALA VAL ARG LEU SEQRES 33 A 747 ALA PRO ALA SER SER ARG LEU ALA LEU TRP PHE ARG PRO SEQRES 34 A 747 GLU ALA VAL ARG THR ILE SER TRP ALA GLY ASN PRO ARG SEQRES 35 A 747 LYS PRO ALA GLU PRO GLU PRO GLY HIS ALA ARG LEU HIS SEQRES 36 A 747 PRO ARG GLY SER PHE GLN ALA TRP GLU GLU THR VAL ARG SEQRES 37 A 747 GLU THR SER PRO ALA TRP LYS ARG ALA ASP LEU ALA ALA SEQRES 38 A 747 ALA GLU GLY PHE ARG SER ALA LEU ILE GLY VAL VAL LEU SEQRES 39 A 747 ARG GLN ALA ALA GLU LEU GLU ARG LEU SER GLU ALA LEU SEQRES 40 A 747 SER ARG SER ASN ALA GLU LEU ASP ALA PHE GLY HIS THR SEQRES 41 A 747 VAL ALA HIS ASP LEU LYS GLU PRO LEU ARG GLY ILE GLN SEQRES 42 A 747 GLN TYR ALA GLY PHE VAL MET GLU ASP TYR HIS GLY ALA SEQRES 43 A 747 LEU GLY PRO GLU GLY ARG GLY HIS MET GLU SER LEU MET SEQRES 44 A 747 TRP LEU ALA GLN ARG SER GLY ASP MET LEU ASP GLY LEU SEQRES 45 A 747 PHE GLU TYR SER ARG ALA GLY ARG VAL ASP LEU ALA TRP SEQRES 46 A 747 GLY GLU VAL ASN MET GLN GLU VAL VAL ASP GLU VAL LEU SEQRES 47 A 747 ALA THR LEU SER THR ARG PHE GLN ALA GLU LYS LEU THR SEQRES 48 A 747 VAL ARG MET PRO ARG ARG LEU PRO THR VAL ARG CYS ASP SEQRES 49 A 747 GLY ILE ARG ILE ALA GLN VAL TRP ALA ASN LEU LEU VAL SEQRES 50 A 747 ASN ALA ALA LYS TYR GLN GLU GLY PRO GLU ARG TRP VAL SEQRES 51 A 747 GLU ALA GLY PHE HIS GLY PRO GLY GLU PRO ARG PRO GLY SEQRES 52 A 747 ALA ALA GLY ARG TYR ALA SER ALA TYR VAL PHE TYR VAL SEQRES 53 A 747 LYS ASP PRO GLY ILE GLY ILE ALA PRO PRO PHE HIS GLU SEQRES 54 A 747 ALA ILE PHE GLU MET PHE ARG ARG LEU HIS SER ALA LYS SEQRES 55 A 747 ALA TYR GLY GLY GLY THR GLY VAL GLY LEU ALA ILE ALA SEQRES 56 A 747 ARG ARG LEU VAL GLN LEU HIS GLY GLY ALA LEU TRP VAL SEQRES 57 A 747 ASP SER ALA PRO LYS GLN GLY ALA THR PHE TYR PHE THR SEQRES 58 A 747 LEU GLY ARG GLY PRO GLY SEQRES 1 B 747 MET ARG PRO SER VAL SER GLU LEU GLU LEU SER GLN CYS SEQRES 2 B 747 ASP ARG GLU PRO ILE HIS LEU LEU GLY GLY ILE GLN ALA SEQRES 3 B 747 TYR GLY VAL LEU LEU ALA PHE ARG GLY PRO ASP ARG ARG SEQRES 4 B 747 LEU GLU VAL VAL SER ALA ASN THR GLN ALA LEU LEU GLY SEQRES 5 B 747 ARG PRO PRO GLU ALA LEU LEU GLY LYS THR ALA ALA GLN SEQRES 6 B 747 VAL LEU PRO ALA GLU LEU TRP ALA GLN TRP GLU LEU LEU SEQRES 7 B 747 SER ALA ARG GLY ALA LEU ARG VAL ALA LEU PRO SER GLY SEQRES 8 B 747 PRO TYR ARG ALA LEU LEU HIS GLU SER ASP GLY LEU THR SEQRES 9 B 747 VAL LEU GLU LEU GLU PRO ALA GLU LEU GLN PRO ASP MET SEQRES 10 B 747 GLU GLU THR ALA LEU GLU LEU VAL ARG ARG LEU VAL SER SEQRES 11 B 747 PRO LEU ALA GLY ALA LYS GLY THR ARG GLU LEU LEU GLN SEQRES 12 B 747 THR ALA ALA ASN THR VAL ARG ALA LEU THR GLY PHE ASP SEQRES 13 B 747 ARG VAL MET VAL TYR ARG PHE ASP ALA ASP TRP HIS GLY SEQRES 14 B 747 GLU VAL LEU ALA GLU SER LYS ARG GLU GLY MET ASP GLY SEQRES 15 B 747 PHE LEU GLY MET HIS PHE PRO ALA THR ASP ILE PRO VAL SEQRES 16 B 747 GLN ALA ARG ALA LEU TYR THR ARG ASN PRO LEU ARG LEU SEQRES 17 B 747 ILE ALA ASN ALA ARG ALA ARG PRO VAL PRO LEU VAL PRO SEQRES 18 B 747 SER VAL VAL PRO GLU LEU GLY ARG PRO LEU ASP LEU SER SEQRES 19 B 747 GLY SER ALA LEU ARG SER VAL SER PRO ILE HIS LEU GLU SEQRES 20 B 747 TYR LEU ARG ASN MET GLY VAL GLU ALA SER PHE SER LEU SEQRES 21 B 747 SER LEU LEU LYS ASP GLY ALA LEU TRP GLY LEU ILE ALA SEQRES 22 B 747 CYS HIS HIS LEU ALA PRO LEU HIS LEU SER TYR GLU ARG SEQRES 23 B 747 ARG ARG ALA CYS GLU VAL LEU THR GLN LEU LEU ALA LEU SEQRES 24 B 747 GLN LEU SER SER GLU GLU ARG ALA ALA GLU ALA ALA GLU SEQRES 25 B 747 ASP SER HIS ARG ALA ALA LEU LEU GLY PRO LEU ALA THR SEQRES 26 B 747 SER LEU GLY ALA GLY GLY THR LEU GLU GLU ALA LEU ALA SEQRES 27 B 747 LYS ASP GLY ALA ARG VAL LEU GLU LEU THR GLY ALA THR SEQRES 28 B 747 GLY ALA ALA LEU LEU LEU GLY GLY GLU PRO LEU LEU VAL SEQRES 29 B 747 GLY ARG THR PRO SER MET ASP GLU VAL GLU ALA LEU ALA SEQRES 30 B 747 ALA TRP LEU ALA PRO GLN PRO PHE GLN THR SER PHE HIS SEQRES 31 B 747 THR GLU ARG LEU GLY SER LEU TYR PRO PRO LEU ALA ALA SEQRES 32 B 747 ARG ALA ASP VAL ALA ALA GLY LEU LEU ALA VAL ARG LEU SEQRES 33 B 747 ALA PRO ALA SER SER ARG LEU ALA LEU TRP PHE ARG PRO SEQRES 34 B 747 GLU ALA VAL ARG THR ILE SER TRP ALA GLY ASN PRO ARG SEQRES 35 B 747 LYS PRO ALA GLU PRO GLU PRO GLY HIS ALA ARG LEU HIS SEQRES 36 B 747 PRO ARG GLY SER PHE GLN ALA TRP GLU GLU THR VAL ARG SEQRES 37 B 747 GLU THR SER PRO ALA TRP LYS ARG ALA ASP LEU ALA ALA SEQRES 38 B 747 ALA GLU GLY PHE ARG SER ALA LEU ILE GLY VAL VAL LEU SEQRES 39 B 747 ARG GLN ALA ALA GLU LEU GLU ARG LEU SER GLU ALA LEU SEQRES 40 B 747 SER ARG SER ASN ALA GLU LEU ASP ALA PHE GLY HIS THR SEQRES 41 B 747 VAL ALA HIS ASP LEU LYS GLU PRO LEU ARG GLY ILE GLN SEQRES 42 B 747 GLN TYR ALA GLY PHE VAL MET GLU ASP TYR HIS GLY ALA SEQRES 43 B 747 LEU GLY PRO GLU GLY ARG GLY HIS MET GLU SER LEU MET SEQRES 44 B 747 TRP LEU ALA GLN ARG SER GLY ASP MET LEU ASP GLY LEU SEQRES 45 B 747 PHE GLU TYR SER ARG ALA GLY ARG VAL ASP LEU ALA TRP SEQRES 46 B 747 GLY GLU VAL ASN MET GLN GLU VAL VAL ASP GLU VAL LEU SEQRES 47 B 747 ALA THR LEU SER THR ARG PHE GLN ALA GLU LYS LEU THR SEQRES 48 B 747 VAL ARG MET PRO ARG ARG LEU PRO THR VAL ARG CYS ASP SEQRES 49 B 747 GLY ILE ARG ILE ALA GLN VAL TRP ALA ASN LEU LEU VAL SEQRES 50 B 747 ASN ALA ALA LYS TYR GLN GLU GLY PRO GLU ARG TRP VAL SEQRES 51 B 747 GLU ALA GLY PHE HIS GLY PRO GLY GLU PRO ARG PRO GLY SEQRES 52 B 747 ALA ALA GLY ARG TYR ALA SER ALA TYR VAL PHE TYR VAL SEQRES 53 B 747 LYS ASP PRO GLY ILE GLY ILE ALA PRO PRO PHE HIS GLU SEQRES 54 B 747 ALA ILE PHE GLU MET PHE ARG ARG LEU HIS SER ALA LYS SEQRES 55 B 747 ALA TYR GLY GLY GLY THR GLY VAL GLY LEU ALA ILE ALA SEQRES 56 B 747 ARG ARG LEU VAL GLN LEU HIS GLY GLY ALA LEU TRP VAL SEQRES 57 B 747 ASP SER ALA PRO LYS GLN GLY ALA THR PHE TYR PHE THR SEQRES 58 B 747 LEU GLY ARG GLY PRO GLY HET BLA A 801 43 HET BLA B 801 43 HETNAM BLA BILIVERDINE IX ALPHA FORMUL 3 BLA 2(C33 H34 N4 O6) HELIX 1 AA1 SER A 11 ARG A 15 5 5 HELIX 2 AA2 THR A 47 GLY A 52 1 6 HELIX 3 AA3 PRO A 54 LEU A 59 1 6 HELIX 4 AA4 THR A 62 LEU A 67 1 6 HELIX 5 AA5 PRO A 68 GLN A 74 1 7 HELIX 6 AA6 GLN A 74 GLY A 82 1 9 HELIX 7 AA7 ASP A 116 SER A 130 1 15 HELIX 8 AA8 GLY A 137 GLY A 154 1 18 HELIX 9 AA9 PRO A 189 ILE A 193 5 5 HELIX 10 AB1 PRO A 194 THR A 202 1 9 HELIX 11 AB2 SER A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 283 GLY A 330 1 48 HELIX 13 AB4 THR A 332 ASP A 340 1 9 HELIX 14 AB5 ASP A 340 GLU A 346 1 7 HELIX 15 AB6 SER A 369 ALA A 381 1 13 HELIX 16 AB7 PRO A 399 ALA A 403 5 5 HELIX 17 AB8 LYS A 475 ALA A 546 1 72 HELIX 18 AB9 SER B 11 GLU B 16 1 6 HELIX 19 AC1 ILE B 18 GLY B 22 5 5 HELIX 20 AC2 THR B 47 GLY B 52 1 6 HELIX 21 AC3 PRO B 55 LEU B 59 5 5 HELIX 22 AC4 THR B 62 VAL B 66 5 5 HELIX 23 AC5 GLN B 74 GLY B 82 1 9 HELIX 24 AC6 ASP B 116 SER B 130 1 15 HELIX 25 AC7 GLY B 137 GLY B 154 1 18 HELIX 26 AC8 PRO B 189 ILE B 193 5 5 HELIX 27 AC9 PRO B 194 ASN B 204 1 11 HELIX 28 AD1 SER B 242 GLY B 253 1 12 HELIX 29 AD2 SER B 283 LEU B 327 1 45 HELIX 30 AD3 THR B 332 ASP B 340 1 9 HELIX 31 AD4 VAL B 344 THR B 348 5 5 HELIX 32 AD5 SER B 369 LEU B 380 1 12 HELIX 33 AD6 ARG B 393 TYR B 398 1 6 HELIX 34 AD7 TYR B 398 ALA B 403 1 6 HELIX 35 AD8 ARG B 476 ASP B 524 1 49 SHEET 1 AA1 7 GLY A 23 ILE A 24 0 SHEET 2 AA1 7 VAL A 217 VAL A 220 -1 O VAL A 217 N ILE A 24 SHEET 3 AA1 7 ARG A 39 SER A 44 -1 N VAL A 43 O VAL A 220 SHEET 4 AA1 7 VAL A 29 ARG A 34 -1 N ARG A 34 O ARG A 39 SHEET 5 AA1 7 LEU A 103 PRO A 110 -1 O THR A 104 N PHE A 33 SHEET 6 AA1 7 PRO A 92 SER A 100 -1 N LEU A 96 O GLU A 107 SHEET 7 AA1 7 ALA A 83 ALA A 87 -1 N VAL A 86 O TYR A 93 SHEET 1 AA2 6 HIS A 187 PHE A 188 0 SHEET 2 AA2 6 GLY A 169 VAL A 171 -1 N GLY A 169 O PHE A 188 SHEET 3 AA2 6 ARG A 157 PHE A 163 -1 N ARG A 162 O GLU A 170 SHEET 4 AA2 6 GLY A 270 HIS A 276 -1 O ALA A 273 N MET A 159 SHEET 5 AA2 6 ALA A 256 LEU A 262 -1 N LEU A 262 O GLY A 270 SHEET 6 AA2 6 ARG A 207 ILE A 209 -1 N ILE A 209 O SER A 257 SHEET 1 AA3 5 LEU A 362 GLY A 365 0 SHEET 2 AA3 5 GLY A 352 LEU A 355 -1 N LEU A 355 O LEU A 362 SHEET 3 AA3 5 LEU A 423 PHE A 427 -1 O PHE A 427 N GLY A 352 SHEET 4 AA3 5 LEU A 411 ARG A 415 -1 N VAL A 414 O ALA A 424 SHEET 5 AA3 5 SER A 388 THR A 391 -1 N PHE A 389 O ALA A 413 SHEET 1 AA4 2 ARG A 433 ALA A 438 0 SHEET 2 AA4 2 ALA A 462 VAL A 467 -1 O TRP A 463 N TRP A 437 SHEET 1 AA5 2 GLU A 446 PRO A 447 0 SHEET 2 AA5 2 LEU A 454 HIS A 455 -1 O HIS A 455 N GLU A 446 SHEET 1 AA6 4 VAL B 29 PHE B 33 0 SHEET 2 AA6 4 LEU B 103 PRO B 110 -1 O THR B 104 N PHE B 33 SHEET 3 AA6 4 PRO B 92 SER B 100 -1 N ARG B 94 O GLU B 109 SHEET 4 AA6 4 ALA B 83 ALA B 87 -1 N VAL B 86 O TYR B 93 SHEET 1 AA7 2 VAL B 43 SER B 44 0 SHEET 2 AA7 2 LEU B 219 VAL B 220 -1 O VAL B 220 N VAL B 43 SHEET 1 AA8 6 HIS B 187 PHE B 188 0 SHEET 2 AA8 6 GLY B 169 LYS B 176 -1 N GLY B 169 O PHE B 188 SHEET 3 AA8 6 ARG B 157 PHE B 163 -1 N VAL B 158 O SER B 175 SHEET 4 AA8 6 ALA B 267 HIS B 276 -1 O LEU B 271 N TYR B 161 SHEET 5 AA8 6 ALA B 256 LYS B 264 -1 N LEU B 262 O GLY B 270 SHEET 6 AA8 6 LEU B 206 ILE B 209 -1 N ILE B 209 O SER B 257 SHEET 1 AA9 5 LEU B 362 GLY B 365 0 SHEET 2 AA9 5 GLY B 352 LEU B 355 -1 N ALA B 353 O VAL B 364 SHEET 3 AA9 5 LEU B 423 ARG B 428 -1 O PHE B 427 N GLY B 352 SHEET 4 AA9 5 GLY B 410 ARG B 415 -1 N VAL B 414 O ALA B 424 SHEET 5 AA9 5 SER B 388 PHE B 389 -1 N PHE B 389 O ALA B 413 SHEET 1 AB1 2 ARG B 433 ALA B 438 0 SHEET 2 AB1 2 ALA B 462 VAL B 467 -1 O TRP B 463 N TRP B 437 SHEET 1 AB2 2 GLU B 446 PRO B 447 0 SHEET 2 AB2 2 LEU B 454 HIS B 455 -1 O HIS B 455 N GLU B 446 LINK SG CYS A 13 CBC BLA A 801 1555 1555 1.85 LINK SG CYS B 13 CBC BLA B 801 1555 1555 1.85 CISPEP 1 VAL A 220 PRO A 221 0 -3.25 CISPEP 2 VAL B 220 PRO B 221 0 -0.67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000