HEADER TRANSFERASE 23-OCT-23 8UQ8 TITLE CRYSTAL STRUCTURE OF RNF168 (RING)-UBCH5C FUSED TO H2A-H2B VIA A 2- TITLE 2 RESIDUE LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF168,UBIQUITIN-CONJUGATING COMPND 3 ENZYME E2 D3,HISTONE H2B TYPE 2-E,HISTONE H2A TYPE 1-B/E; COMPND 4 CHAIN: A, a; COMPND 5 EC: 2.3.2.23,2.3.2.24; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUES 1-94 OF RNF168, FOLLOWED BY RESIDUES 2-147 OF COMPND 8 UBCH5C, FOLLOWED BY RESIDUES 33-123 OF H2B, FOLLOWED BY RESIDUES 12- COMPND 9 105 OF H2A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF168, UBE2D3, UBC5C, UBCH5C, H2BC21, H2BFQ, HIST2H2BE, SOURCE 6 H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNF168, UBCH5C, HISTONE H2A, HISTONE H2B, CHROMATIN, UBIQUITIN KEYWDS 2 LIGASE, UBIQUITIN-CONJUGATING ENZYME, DNA DAMAGE RESPONSE, DNA KEYWDS 3 DOUBLE-STRAND BREAK REPAIR, PROTEIN BINDING, PROTEIN BINDING- KEYWDS 4 TRANSFERASE COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.HU,M.V.BOTUYAN,G.MER REVDAT 3 20-MAR-24 8UQ8 1 JRNL REVDAT 2 31-JAN-24 8UQ8 1 JRNL REVDAT 1 17-JAN-24 8UQ8 0 JRNL AUTH Q.HU,D.ZHAO,G.CUI,J.BHANDARI,J.R.THOMPSON,M.V.BOTUYAN,G.MER JRNL TITL MECHANISMS OF RNF168 NUCLEOSOME RECOGNITION AND JRNL TITL 2 UBIQUITYLATION. JRNL REF MOL.CELL V. 84 839 2024 JRNL REFN ISSN 1097-2765 JRNL PMID 38242129 JRNL DOI 10.1016/J.MOLCEL.2023.12.036 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 61683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0600 - 5.6400 0.99 4236 136 0.1636 0.1742 REMARK 3 2 5.6400 - 4.4800 1.00 4274 139 0.1498 0.1919 REMARK 3 3 4.4800 - 3.9100 1.00 4276 148 0.1533 0.1757 REMARK 3 4 3.9100 - 3.5600 1.00 4286 141 0.1742 0.2170 REMARK 3 5 3.5500 - 3.3000 1.00 4298 142 0.2006 0.2091 REMARK 3 6 3.3000 - 3.1100 1.00 4262 140 0.2319 0.2890 REMARK 3 7 3.1100 - 2.9500 1.00 4238 152 0.2381 0.3185 REMARK 3 8 2.9500 - 2.8200 1.00 4299 140 0.2312 0.3302 REMARK 3 9 2.8200 - 2.7100 1.00 4254 152 0.2425 0.2826 REMARK 3 10 2.7100 - 2.6200 1.00 4246 133 0.2535 0.3131 REMARK 3 11 2.6200 - 2.5400 1.00 4301 148 0.2432 0.3488 REMARK 3 12 2.5400 - 2.4700 0.99 4294 146 0.2452 0.2894 REMARK 3 13 2.4700 - 2.4000 1.00 4264 144 0.2513 0.3033 REMARK 3 14 2.4000 - 2.3400 0.98 4165 129 0.2611 0.2944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6890 REMARK 3 ANGLE : 0.600 9327 REMARK 3 CHIRALITY : 0.039 1040 REMARK 3 PLANARITY : 0.005 1193 REMARK 3 DIHEDRAL : 5.334 959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61785 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.10930 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.84890 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4GB0, 5EGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED BY MIXING 2 REMARK 280 MICROLITERS OF THE PROTEIN FUSION (9.5 MG/ML) IN 10 MM HEPES, PH REMARK 280 7.5, 600 MM NACL, 1 MM TCEP AND 2 MICROLITERS OF THE RESERVOIR REMARK 280 SOLUTION CONTAINING 0.1 M HEPES, PH 7.5, 2.4 M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.99500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.99000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 92 REMARK 465 SER A 93 REMARK 465 GLY A 94 REMARK 465 SER A 95 REMARK 465 GLY A 96 REMARK 465 VAL A 3100 REMARK 465 THR A 3101 REMARK 465 ILE A 3102 REMARK 465 ALA A 3103 REMARK 465 GLN A 3104 REMARK 465 GLY A 3105 REMARK 465 GLY a -1 REMARK 465 ALA a 92 REMARK 465 SER a 93 REMARK 465 GLY a 94 REMARK 465 SER a 95 REMARK 465 GLY a 96 REMARK 465 SER a 97 REMARK 465 GLY a 98 REMARK 465 VAL a 3100 REMARK 465 THR a 3101 REMARK 465 ILE a 3102 REMARK 465 ALA a 3103 REMARK 465 GLN a 3104 REMARK 465 GLY a 3105 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 480 ASP A 6 OD1 OD2 REMARK 480 LYS A 46 CG CD CE NZ REMARK 480 ARG A 67 CD NE CZ NH1 NH2 REMARK 480 LYS A 89 CG CD CE NZ REMARK 480 GLY A 100 C REMARK 480 LYS A 1004 CD CE NZ REMARK 480 ARG A 1015 CB CG CD NE CZ NH1 NH2 REMARK 480 GLN A 1020 CB CG CD OE1 NE2 REMARK 480 LYS A 1066 NZ REMARK 480 ARG A 1072 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 2033 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 2033 NH2 REMARK 480 LYS A 2034 CG CD CE NZ REMARK 480 LYS A 2057 CD REMARK 480 LYS A 2085 CG CD CE NZ REMARK 480 ARG A 2086 CZ NH1 NH2 REMARK 480 LYS A 2108 CG CD CE NZ REMARK 480 LYS A 2120 CE REMARK 480 LYS A 3036 CD CE NZ REMARK 480 ASN A 3038 CG OD1 ND2 REMARK 480 GLU A 3041 CB CG CD OE1 OE2 REMARK 480 ARG A 3042 CD NE CZ NH1 NH2 REMARK 480 LYS A 3074 CB CG CD CE NZ REMARK 480 ARG A 3088 CD NE CZ NH1 NH2 REMARK 480 ARG A 3099 CG CD NE CZ NH1 NH2 REMARK 480 HIS a 0 CG ND1 CD2 CE1 NE2 REMARK 480 ASP a 6 CG OD1 OD2 REMARK 480 LYS a 89 CD CE NZ REMARK 480 ARG a 1015 CG CD NE CZ NH1 NH2 REMARK 480 ARG a 2033 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS a 2057 CG CD CE NZ REMARK 480 ARG a 2086 NE CZ NH1 NH2 REMARK 480 LYS a 2120 CE NZ REMARK 480 LYS a 3036 CD CE NZ REMARK 480 ARG a 3042 NE CZ NH1 NH2 REMARK 480 ARG a 3077 CZ NH1 NH2 REMARK 480 ARG a 3088 CG CD NE CZ NH1 NH2 REMARK 480 ARG a 3099 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 44 -62.98 -120.35 REMARK 500 ALA A 47 -98.66 -128.86 REMARK 500 GLN A1020 31.99 74.37 REMARK 500 SER A1022 148.58 -177.02 REMARK 500 PRO A1044 0.88 -66.85 REMARK 500 ARG A1090 -78.65 -134.67 REMARK 500 HIS A2049 77.49 -151.07 REMARK 500 ASP A2051 34.79 -86.99 REMARK 500 VAL a 44 -64.14 -120.46 REMARK 500 ALA a 47 -95.31 -125.70 REMARK 500 SER a1022 144.14 -173.35 REMARK 500 PRO a1044 2.55 -67.09 REMARK 500 ARG a1090 -78.19 -134.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4008 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 16 SG REMARK 620 2 CYS A 19 SG 108.2 REMARK 620 3 CYS A 36 SG 116.0 110.2 REMARK 620 4 CYS A 39 SG 113.3 106.5 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4007 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 HIS A 33 ND1 104.0 REMARK 620 3 CYS A 51 SG 112.6 117.0 REMARK 620 4 CYS A 54 SG 106.8 106.5 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A4012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE2 REMARK 620 2 TYR A2121 OH 75.4 REMARK 620 3 HOH A5069 O 80.3 5.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A4009 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A1083 OG REMARK 620 2 HOH A5029 O 97.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA a4017 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1117 OD1 REMARK 620 2 ASP A1117 OD2 54.6 REMARK 620 3 ARG a2099 O 113.2 70.0 REMARK 620 4 LEU a2102 O 114.1 71.6 1.8 REMARK 620 5 HOH a5005 O 111.6 68.9 1.7 2.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A4011 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A2099 O REMARK 620 2 LEU A2102 O 106.2 REMARK 620 3 HOH A5008 O 106.9 101.2 REMARK 620 4 ASP a1117 OD1 68.8 40.1 125.6 REMARK 620 5 ASP a1117 OD2 69.4 40.1 126.8 1.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN a4011 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS a 16 SG REMARK 620 2 CYS a 19 SG 106.9 REMARK 620 3 CYS a 36 SG 114.9 111.0 REMARK 620 4 CYS a 39 SG 114.5 107.0 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN a4010 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS a 31 SG REMARK 620 2 HIS a 33 ND1 105.6 REMARK 620 3 CYS a 51 SG 111.9 116.7 REMARK 620 4 CYS a 54 SG 105.4 106.8 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA a4016 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU a 75 OE2 REMARK 620 2 TYR a2121 OH 77.8 REMARK 620 3 HOH a5076 O 82.3 4.9 REMARK 620 N 1 2 DBREF 8UQ8 A 1 94 UNP Q8IYW5 RN168_HUMAN 1 94 DBREF 8UQ8 A 1002 1147 UNP P61077 UB2D3_HUMAN 2 147 DBREF 8UQ8 A 2033 2123 UNP Q16778 H2B2E_HUMAN 34 124 DBREF 8UQ8 A 3012 3105 UNP P04908 H2A1B_HUMAN 13 106 DBREF 8UQ8 a 1 94 UNP Q8IYW5 RN168_HUMAN 1 94 DBREF 8UQ8 a 1002 1147 UNP P61077 UB2D3_HUMAN 2 147 DBREF 8UQ8 a 2033 2123 UNP Q16778 H2B2E_HUMAN 34 124 DBREF 8UQ8 a 3012 3105 UNP P04908 H2A1B_HUMAN 13 106 SEQADV 8UQ8 GLY A -1 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ8 HIS A 0 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ8 SER A 95 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY A 96 UNP Q8IYW5 LINKER SEQADV 8UQ8 SER A 97 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY A 98 UNP Q8IYW5 LINKER SEQADV 8UQ8 SER A 99 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY A 100 UNP Q8IYW5 LINKER SEQADV 8UQ8 SER A 101 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY A 1148 UNP P61077 LINKER SEQADV 8UQ8 SER A 1149 UNP P61077 LINKER SEQADV 8UQ8 SER A 3011 UNP Q16778 LINKER SEQADV 8UQ8 GLY a -1 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ8 HIS a 0 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ8 SER a 95 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY a 96 UNP Q8IYW5 LINKER SEQADV 8UQ8 SER a 97 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY a 98 UNP Q8IYW5 LINKER SEQADV 8UQ8 SER a 99 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY a 100 UNP Q8IYW5 LINKER SEQADV 8UQ8 SER a 101 UNP Q8IYW5 LINKER SEQADV 8UQ8 GLY a 1148 UNP P61077 LINKER SEQADV 8UQ8 SER a 1149 UNP P61077 LINKER SEQADV 8UQ8 SER a 3011 UNP Q16778 LINKER SEQRES 1 A 437 GLY HIS MET ALA LEU PRO LYS ASP ALA ILE PRO SER LEU SEQRES 2 A 437 SER GLU CYS GLN CYS GLY ILE CYS MET GLU ILE LEU VAL SEQRES 3 A 437 GLU PRO VAL THR LEU PRO CYS ASN HIS THR LEU CYS LYS SEQRES 4 A 437 PRO CYS PHE GLN SER THR VAL GLU LYS ALA SER LEU CYS SEQRES 5 A 437 CYS PRO PHE CYS ARG ARG ARG VAL SER SER TRP THR ARG SEQRES 6 A 437 TYR HIS THR ARG ARG ASN SER LEU VAL ASN VAL GLU LEU SEQRES 7 A 437 TRP THR ILE ILE GLN LYS HIS TYR PRO ARG GLU CYS LYS SEQRES 8 A 437 LEU ARG ALA SER GLY SER GLY SER GLY SER GLY SER ALA SEQRES 9 A 437 LEU LYS ARG ILE ASN LYS GLU LEU SER ASP LEU ALA ARG SEQRES 10 A 437 ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL GLY ASP SEQRES 11 A 437 ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY PRO ASN SEQRES 12 A 437 ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU THR ILE SEQRES 13 A 437 HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO LYS VAL SEQRES 14 A 437 ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE ASN SER SEQRES 15 A 437 ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SER GLN TRP SEQRES 16 A 437 SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU SER ILE SEQRES 17 A 437 CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP PRO LEU SEQRES 18 A 437 VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP ARG ASP SEQRES 19 A 437 LYS TYR ASN ARG ILE SER ARG GLU TRP THR GLN LYS TYR SEQRES 20 A 437 ALA MET GLY SER ARG LYS GLU SER TYR SER ILE TYR VAL SEQRES 21 A 437 TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SEQRES 22 A 437 SER SER LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN SEQRES 23 A 437 ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU SEQRES 24 A 437 ALA HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU SEQRES 25 A 437 ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU SEQRES 26 A 437 ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR SEQRES 27 A 437 LYS TYR THR SER SER ALA LYS ALA LYS THR ARG SER SER SEQRES 28 A 437 ARG ALA GLY LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG SEQRES 29 A 437 LEU LEU ARG LYS GLY ASN TYR SER GLU ARG VAL GLY ALA SEQRES 30 A 437 GLY ALA PRO VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU SEQRES 31 A 437 THR ALA GLU ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG SEQRES 32 A 437 ASP ASN LYS LYS THR ARG ILE ILE PRO ARG HIS LEU GLN SEQRES 33 A 437 LEU ALA ILE ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU SEQRES 34 A 437 GLY ARG VAL THR ILE ALA GLN GLY SEQRES 1 a 437 GLY HIS MET ALA LEU PRO LYS ASP ALA ILE PRO SER LEU SEQRES 2 a 437 SER GLU CYS GLN CYS GLY ILE CYS MET GLU ILE LEU VAL SEQRES 3 a 437 GLU PRO VAL THR LEU PRO CYS ASN HIS THR LEU CYS LYS SEQRES 4 a 437 PRO CYS PHE GLN SER THR VAL GLU LYS ALA SER LEU CYS SEQRES 5 a 437 CYS PRO PHE CYS ARG ARG ARG VAL SER SER TRP THR ARG SEQRES 6 a 437 TYR HIS THR ARG ARG ASN SER LEU VAL ASN VAL GLU LEU SEQRES 7 a 437 TRP THR ILE ILE GLN LYS HIS TYR PRO ARG GLU CYS LYS SEQRES 8 a 437 LEU ARG ALA SER GLY SER GLY SER GLY SER GLY SER ALA SEQRES 9 a 437 LEU LYS ARG ILE ASN LYS GLU LEU SER ASP LEU ALA ARG SEQRES 10 a 437 ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL GLY ASP SEQRES 11 a 437 ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY PRO ASN SEQRES 12 a 437 ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU THR ILE SEQRES 13 a 437 HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO LYS VAL SEQRES 14 a 437 ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE ASN SER SEQRES 15 a 437 ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SER GLN TRP SEQRES 16 a 437 SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU SER ILE SEQRES 17 a 437 CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP PRO LEU SEQRES 18 a 437 VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP ARG ASP SEQRES 19 a 437 LYS TYR ASN ARG ILE SER ARG GLU TRP THR GLN LYS TYR SEQRES 20 a 437 ALA MET GLY SER ARG LYS GLU SER TYR SER ILE TYR VAL SEQRES 21 a 437 TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SEQRES 22 a 437 SER SER LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN SEQRES 23 a 437 ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU SEQRES 24 a 437 ALA HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU SEQRES 25 a 437 ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU SEQRES 26 a 437 ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR SEQRES 27 a 437 LYS TYR THR SER SER ALA LYS ALA LYS THR ARG SER SER SEQRES 28 a 437 ARG ALA GLY LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG SEQRES 29 a 437 LEU LEU ARG LYS GLY ASN TYR SER GLU ARG VAL GLY ALA SEQRES 30 a 437 GLY ALA PRO VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU SEQRES 31 a 437 THR ALA GLU ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG SEQRES 32 a 437 ASP ASN LYS LYS THR ARG ILE ILE PRO ARG HIS LEU GLN SEQRES 33 a 437 LEU ALA ILE ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU SEQRES 34 a 437 GLY ARG VAL THR ILE ALA GLN GLY HET CL A4001 1 HET CL A4002 1 HET CL A4003 1 HET CL A4004 1 HET GOL A4005 14 HET GOL A4006 14 HET ZN A4007 1 HET ZN A4008 1 HET NA A4009 1 HET GOL A4010 13 HET NA A4011 1 HET NA A4012 1 HET CL A4013 1 HET CL A4014 1 HET CL A4015 1 HET CL a4001 1 HET CL a4002 1 HET CL a4003 1 HET CL a4004 1 HET CL a4005 1 HET CL a4006 1 HET CL a4007 1 HET GOL a4008 13 HET GOL a4009 14 HET ZN a4010 1 HET ZN a4011 1 HET CL a4012 1 HET CL a4013 1 HET CL a4014 1 HET CL a4015 1 HET NA a4016 1 HET NA a4017 1 HET CL a4018 1 HET CL a4019 1 HET CL a4020 1 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 21(CL 1-) FORMUL 7 GOL 5(C3 H8 O3) FORMUL 9 ZN 4(ZN 2+) FORMUL 11 NA 5(NA 1+) FORMUL 38 HOH *192(H2 O) HELIX 1 AA1 PRO A 4 ILE A 8 5 5 HELIX 2 AA2 LEU A 11 GLN A 15 5 5 HELIX 3 AA3 CYS A 36 VAL A 44 1 9 HELIX 4 AA4 VAL A 58 ASN A 69 1 12 HELIX 5 AA5 ASN A 73 TYR A 84 1 12 HELIX 6 AA6 TYR A 84 ARG A 91 1 8 HELIX 7 AA7 SER A 101 ASP A 1016 1 16 HELIX 8 AA8 LEU A 1086 ARG A 1090 5 5 HELIX 9 AA9 THR A 1098 ASP A 1112 1 15 HELIX 10 AB1 VAL A 1120 ASP A 1130 1 11 HELIX 11 AB2 ASP A 1130 ALA A 1146 1 17 HELIX 12 AB3 TYR A 2037 HIS A 2049 1 13 HELIX 13 AB4 SER A 2055 ASN A 2084 1 30 HELIX 14 AB5 THR A 2090 LEU A 2102 1 13 HELIX 15 AB6 PRO A 2103 SER A 2123 1 21 HELIX 16 AB7 THR A 3016 GLY A 3022 1 7 HELIX 17 AB8 PRO A 3026 GLY A 3037 1 12 HELIX 18 AB9 ALA A 3045 ASN A 3073 1 29 HELIX 19 AC1 ILE A 3079 ASP A 3090 1 12 HELIX 20 AC2 ASP A 3090 LEU A 3097 1 8 HELIX 21 AC3 PRO a 4 ILE a 8 5 5 HELIX 22 AC4 LEU a 11 GLN a 15 5 5 HELIX 23 AC5 CYS a 36 VAL a 44 1 9 HELIX 24 AC6 VAL a 58 ARG a 68 1 11 HELIX 25 AC7 ASN a 73 TYR a 84 1 12 HELIX 26 AC8 TYR a 84 ARG a 91 1 8 HELIX 27 AC9 SER a 101 ASP a 1016 1 16 HELIX 28 AD1 LEU a 1086 ARG a 1090 5 5 HELIX 29 AD2 THR a 1098 ASP a 1112 1 15 HELIX 30 AD3 VAL a 1120 ASP a 1130 1 11 HELIX 31 AD4 ASP a 1130 ALA a 1146 1 17 HELIX 32 AD5 TYR a 2037 HIS a 2049 1 13 HELIX 33 AD6 SER a 2055 ASN a 2084 1 30 HELIX 34 AD7 THR a 2090 LEU a 2102 1 13 HELIX 35 AD8 PRO a 2103 SER a 2123 1 21 HELIX 36 AD9 THR a 3016 GLY a 3022 1 7 HELIX 37 AE1 PRO a 3026 GLY a 3037 1 12 HELIX 38 AE2 ALA a 3045 ASN a 3073 1 29 HELIX 39 AE3 ILE a 3079 ASN a 3089 1 11 HELIX 40 AE4 ASP a 3090 GLY a 3098 1 9 SHEET 1 AA1 2 VAL A 27 THR A 28 0 SHEET 2 AA1 2 THR A 34 LEU A 35 -1 O LEU A 35 N VAL A 27 SHEET 1 AA2 4 CYS A1021 PRO A1025 0 SHEET 2 AA2 4 HIS A1032 MET A1038 -1 O THR A1036 N SER A1022 SHEET 3 AA2 4 VAL A1049 HIS A1055 -1 O PHE A1050 N ILE A1037 SHEET 4 AA2 4 LYS A1066 PHE A1069 -1 O LYS A1066 N HIS A1055 SHEET 1 AA3 2 GLY A2053 ILE A2054 0 SHEET 2 AA3 2 ARG A3077 ILE A3078 1 O ILE A3078 N GLY A2053 SHEET 1 AA4 2 THR A2088 ILE A2089 0 SHEET 2 AA4 2 ARG A3042 VAL A3043 1 O ARG A3042 N ILE A2089 SHEET 1 AA5 2 VAL a 27 THR a 28 0 SHEET 2 AA5 2 THR a 34 LEU a 35 -1 O LEU a 35 N VAL a 27 SHEET 1 AA6 4 CYS a1021 PRO a1025 0 SHEET 2 AA6 4 HIS a1032 MET a1038 -1 O THR a1036 N SER a1022 SHEET 3 AA6 4 VAL a1049 HIS a1055 -1 O ILE a1054 N TRP a1033 SHEET 4 AA6 4 LYS a1066 PHE a1069 -1 O LYS a1066 N HIS a1055 SHEET 1 AA7 2 GLY a2053 ILE a2054 0 SHEET 2 AA7 2 ARG a3077 ILE a3078 1 O ILE a3078 N GLY a2053 SHEET 1 AA8 2 THR a2088 ILE a2089 0 SHEET 2 AA8 2 ARG a3042 VAL a3043 1 O ARG a3042 N ILE a2089 LINK SG CYS A 16 ZN ZN A4008 1555 1555 2.31 LINK SG CYS A 19 ZN ZN A4008 1555 1555 2.30 LINK SG CYS A 31 ZN ZN A4007 1555 1555 2.25 LINK ND1 HIS A 33 ZN ZN A4007 1555 1555 2.02 LINK SG CYS A 36 ZN ZN A4008 1555 1555 2.30 LINK SG CYS A 39 ZN ZN A4008 1555 1555 2.29 LINK SG CYS A 51 ZN ZN A4007 1555 1555 2.27 LINK SG CYS A 54 ZN ZN A4007 1555 1555 2.38 LINK OE2 GLU A 75 NA NA A4012 1555 3554 2.70 LINK OG SER A1083 NA NA A4009 1555 1555 2.90 LINK OD1 ASP A1117 NA NA a4017 1555 3554 2.11 LINK OD2 ASP A1117 NA NA a4017 1555 3554 2.61 LINK O ARG A2099 NA NA A4011 1555 1555 2.30 LINK O LEU A2102 NA NA A4011 1555 1555 2.27 LINK OH TYR A2121 NA NA A4012 1555 1555 2.44 LINK NA NA A4009 O HOH A5029 1555 1555 3.04 LINK NA NA A4011 O HOH A5008 1555 1555 2.29 LINK NA NA A4011 OD1 ASP a1117 2554 1555 2.34 LINK NA NA A4011 OD2 ASP a1117 2554 1555 2.29 LINK NA NA A4012 O HOH A5069 1555 1555 3.02 LINK SG CYS a 16 ZN ZN a4011 1555 1555 2.29 LINK SG CYS a 19 ZN ZN a4011 1555 1555 2.32 LINK SG CYS a 31 ZN ZN a4010 1555 1555 2.24 LINK ND1 HIS a 33 ZN ZN a4010 1555 1555 2.04 LINK SG CYS a 36 ZN ZN a4011 1555 1555 2.31 LINK SG CYS a 39 ZN ZN a4011 1555 1555 2.34 LINK SG CYS a 51 ZN ZN a4010 1555 1555 2.30 LINK SG CYS a 54 ZN ZN a4010 1555 1555 2.37 LINK OE2 GLU a 75 NA NA a4016 1555 3564 2.63 LINK O ARG a2099 NA NA a4017 1555 1555 2.13 LINK O LEU a2102 NA NA a4017 1555 1555 2.23 LINK OH TYR a2121 NA NA a4016 1555 1555 2.55 LINK NA NA a4016 O HOH a5076 1555 1555 2.95 LINK NA NA a4017 O HOH a5005 1555 1555 2.51 CISPEP 1 TYR A 1060 PRO A 1061 0 12.57 CISPEP 2 TYR a 1060 PRO a 1061 0 12.15 CRYST1 107.539 107.539 113.985 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009299 0.005369 0.000000 0.00000 SCALE2 0.000000 0.010738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008773 0.00000