HEADER TRANSFERASE 23-OCT-23 8UQA TITLE CRYSTAL STRUCTURE OF RNF168 (RING)-UBCH5C FUSED TO H2A-H2B VIA A 12- TITLE 2 RESIDUE LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF168,UBIQUITIN-CONJUGATING COMPND 3 ENZYME E2 D3,HISTONE H2B TYPE 2-E,HISTONE H2A TYPE 1-B/E; COMPND 4 CHAIN: K; COMPND 5 EC: 2.3.2.27,2.3.2.23,2.3.2.24; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 1-94 OF RNF168, FOLLOWED BY RESIDUES 2-147 OF COMPND 9 UBCH5C, FOLLOWED BY RESIDUES 33-123 OF H2B, FOLLOWED BY RESIDUES 12- COMPND 10 105 OF H2A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF168, UBE2D3, UBC5C, UBCH5C, H2BC21, H2BFQ, HIST2H2BE, SOURCE 6 H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNF168, UBCH5C, HISTONE H2A, HISTONE H2B, CHROMATIN, UBIQUITIN KEYWDS 2 LIGASE, UBIQUITIN-CONJUGATING ENZYME, DNA DAMAGE RESPONSE, DNA KEYWDS 3 DOUBLE-STRAND BREAK REPAIR, PROTEIN BINDING, PROTEIN BINDING- KEYWDS 4 TRANSFERASE COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.HU,M.V.BOTUYAN,G.MER REVDAT 3 20-MAR-24 8UQA 1 JRNL REVDAT 2 31-JAN-24 8UQA 1 JRNL REVDAT 1 17-JAN-24 8UQA 0 JRNL AUTH Q.HU,D.ZHAO,G.CUI,J.BHANDARI,J.R.THOMPSON,M.V.BOTUYAN,G.MER JRNL TITL MECHANISMS OF RNF168 NUCLEOSOME RECOGNITION AND JRNL TITL 2 UBIQUITYLATION. JRNL REF MOL.CELL V. 84 839 2024 JRNL REFN ISSN 1097-2765 JRNL PMID 38242129 JRNL DOI 10.1016/J.MOLCEL.2023.12.036 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1790 - 4.9351 1.00 2408 150 0.1898 0.2278 REMARK 3 2 4.9351 - 3.9183 1.00 2321 144 0.1468 0.1861 REMARK 3 3 3.9183 - 3.4233 1.00 2298 145 0.1632 0.1903 REMARK 3 4 3.4233 - 3.1105 1.00 2272 140 0.1893 0.2518 REMARK 3 5 3.1105 - 2.8876 1.00 2287 143 0.2175 0.2370 REMARK 3 6 2.8876 - 2.7174 1.00 2254 140 0.2143 0.2530 REMARK 3 7 2.7174 - 2.5813 1.00 2276 142 0.2256 0.2664 REMARK 3 8 2.5813 - 2.4690 1.00 2263 143 0.2224 0.2813 REMARK 3 9 2.4690 - 2.3740 1.00 2269 141 0.2211 0.2461 REMARK 3 10 2.3740 - 2.2920 1.00 2223 142 0.2288 0.2481 REMARK 3 11 2.2920 - 2.2204 1.00 2281 144 0.2165 0.2594 REMARK 3 12 2.2204 - 2.1569 1.00 2236 143 0.2228 0.2625 REMARK 3 13 2.1569 - 2.1001 1.00 2257 142 0.2182 0.2775 REMARK 3 14 2.1001 - 2.0490 0.99 2227 140 0.2483 0.2700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3464 REMARK 3 ANGLE : 0.554 4697 REMARK 3 CHIRALITY : 0.040 523 REMARK 3 PLANARITY : 0.004 605 REMARK 3 DIHEDRAL : 11.176 2146 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33909 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.049 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.09873 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83340 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4GB0, 5EGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED BY MIXING 2 REMARK 280 MICROLITERS OF THE PROTEIN FUSION (8.0 MG/ML) IN 10 MM HEPES, PH REMARK 280 7.5, 600 MM NACL, 1 MM TCEP AND 2 MICROLITERS OF THE RESERVOIR REMARK 280 SOLUTION CONTAINING 0.1 M HEPES, PH 7.5, 2.4 M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.15400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.07700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.07700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.15400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH K5225 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY K -1 REMARK 465 HIS K 0 REMARK 465 MET K 1 REMARK 465 ALA K 2 REMARK 465 LEU K 3 REMARK 465 PRO K 4 REMARK 465 LYS K 5 REMARK 465 ASP K 6 REMARK 465 ALA K 7 REMARK 465 ILE K 8 REMARK 465 PRO K 9 REMARK 465 SER K 10 REMARK 465 LEU K 11 REMARK 465 SER K 95 REMARK 465 GLY K 96 REMARK 465 SER K 97 REMARK 465 GLY K 98 REMARK 465 SER K 99 REMARK 465 GLN K 3104 REMARK 465 GLY K 3105 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU K 13 CA C O CB CG OE2 REMARK 480 ILE K 22 CB CG2 CD1 REMARK 480 VAL K 44 CG1 CG2 REMARK 480 GLU K 45 CA CB CG CD OE1 OE2 REMARK 480 LYS K 46 CB CG CD CE NZ REMARK 480 LEU K 49 CB CG CD1 CD2 REMARK 480 ARG K 55 CG CD CZ NH2 REMARK 480 ARG K 57 CG CD NE CZ NH1 NH2 REMARK 480 TYR K 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG K 67 O CG NH2 REMARK 480 ARG K 68 N NH2 REMARK 480 ASN K 69 CB CG OD1 ND2 REMARK 480 LEU K 71 CD1 CD2 REMARK 480 VAL K 74 CG2 REMARK 480 GLU K 75 CG CD OE1 OE2 REMARK 480 THR K 78 OG1 CG2 REMARK 480 ILE K 79 N CA CG1 CD1 REMARK 480 ILE K 80 CG1 CG2 CD1 REMARK 480 LYS K 82 CA C O CB CG CD CE REMARK 480 LYS K 82 NZ REMARK 480 HIS K 83 ND1 CE1 NE2 REMARK 480 TYR K 84 CD1 CD2 CE1 CE2 REMARK 480 PRO K 85 CB CG CD REMARK 480 ARG K 86 N CB CG CD NH2 REMARK 480 CYS K 88 CB REMARK 480 LYS K 89 CB CG CD CE NZ REMARK 480 LEU K 90 CB CG CD1 CD2 REMARK 480 ARG K 91 CB NE CZ NH1 NH2 REMARK 480 ALA K 92 CA CB REMARK 480 SER K 93 CB OG REMARK 480 GLY K 100 N CA REMARK 480 LYS K 1008 CD CE NZ REMARK 480 LEU K 1013 CD1 CD2 REMARK 480 ALA K 1014 CB REMARK 480 ARG K 1015 CG CD NE CZ NH1 NH2 REMARK 480 ASP K 1016 OD1 OD2 REMARK 480 PRO K 1017 CB CG REMARK 480 ASP K 1042 CA C O REMARK 480 ARG K 1125 CG CD NE CZ NH1 NH2 REMARK 480 THR K 1129 CG2 REMARK 480 GLY K 1148 CA REMARK 480 SER K 1149 O REMARK 480 ALA K 3012 CB REMARK 480 LYS K 3013 CD CE NZ REMARK 480 ALA K 3014 CA CB REMARK 480 LYS K 3015 CG CD CE NZ REMARK 480 ARG K 3042 CZ NH1 NH2 REMARK 480 ARG K 3071 CD NE REMARK 480 LYS K 3074 CD CE NZ REMARK 480 ALA K 3103 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH K 5133 O HOH K 5205 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA K 47 -65.07 -139.92 REMARK 500 ARG K1090 -91.76 -140.04 REMARK 500 ASN K1114 77.59 -119.82 REMARK 500 SER K1149 87.93 -163.71 REMARK 500 SER K1155 44.62 -148.49 REMARK 500 ILE K3102 -75.81 -115.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH K5250 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH K5251 DISTANCE = 7.74 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA K4002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU K 13 OE1 REMARK 620 2 HOH K5103 O 126.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K4004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS K 16 SG REMARK 620 2 CYS K 19 SG 76.5 REMARK 620 3 CYS K 36 SG 95.6 104.8 REMARK 620 4 CYS K 39 SG 130.9 129.1 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA K4001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE K 22 O REMARK 620 2 HOH K5241 O 161.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K4003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS K 31 SG REMARK 620 2 HIS K 33 ND1 115.0 REMARK 620 3 CYS K 51 SG 103.2 106.6 REMARK 620 4 CYS K 54 SG 106.2 113.0 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA K4009 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER K1152 OG REMARK 620 2 GLY K1153 O 104.7 REMARK 620 3 ASN K3038 OD1 89.9 162.2 REMARK 620 4 HOH K5077 O 88.8 80.4 89.9 REMARK 620 5 HOH K5083 O 173.9 71.7 94.5 95.4 REMARK 620 6 HOH K5157 O 93.5 79.2 110.5 159.4 81.0 REMARK 620 N 1 2 3 4 5 DBREF 8UQA K 1 94 UNP Q8IYW5 RN168_HUMAN 1 94 DBREF 8UQA K 1002 1147 UNP P61077 UB2D3_HUMAN 2 147 DBREF 8UQA K 2033 2123 UNP Q16778 H2B2E_HUMAN 34 124 DBREF 8UQA K 3012 3105 UNP P04908 H2A1B_HUMAN 13 106 SEQADV 8UQA GLY K -1 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQA HIS K 0 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQA SER K 95 UNP Q8IYW5 LINKER SEQADV 8UQA GLY K 96 UNP Q8IYW5 LINKER SEQADV 8UQA SER K 97 UNP Q8IYW5 LINKER SEQADV 8UQA GLY K 98 UNP Q8IYW5 LINKER SEQADV 8UQA SER K 99 UNP Q8IYW5 LINKER SEQADV 8UQA GLY K 100 UNP Q8IYW5 LINKER SEQADV 8UQA SER K 101 UNP Q8IYW5 LINKER SEQADV 8UQA LYS K 1085 UNP P61077 CYS 85 ENGINEERED MUTATION SEQADV 8UQA GLY K 1148 UNP P61077 LINKER SEQADV 8UQA SER K 1149 UNP P61077 LINKER SEQADV 8UQA GLY K 1150 UNP P61077 LINKER SEQADV 8UQA GLY K 1151 UNP P61077 LINKER SEQADV 8UQA SER K 1152 UNP P61077 LINKER SEQADV 8UQA GLY K 1153 UNP P61077 LINKER SEQADV 8UQA GLY K 1154 UNP P61077 LINKER SEQADV 8UQA SER K 1155 UNP P61077 LINKER SEQADV 8UQA GLY K 1156 UNP P61077 LINKER SEQADV 8UQA SER K 1157 UNP P61077 LINKER SEQADV 8UQA GLY K 1158 UNP P61077 LINKER SEQADV 8UQA SER K 1159 UNP P61077 LINKER SEQADV 8UQA SER K 3011 UNP Q16778 LINKER SEQRES 1 K 447 GLY HIS MET ALA LEU PRO LYS ASP ALA ILE PRO SER LEU SEQRES 2 K 447 SER GLU CYS GLN CYS GLY ILE CYS MET GLU ILE LEU VAL SEQRES 3 K 447 GLU PRO VAL THR LEU PRO CYS ASN HIS THR LEU CYS LYS SEQRES 4 K 447 PRO CYS PHE GLN SER THR VAL GLU LYS ALA SER LEU CYS SEQRES 5 K 447 CYS PRO PHE CYS ARG ARG ARG VAL SER SER TRP THR ARG SEQRES 6 K 447 TYR HIS THR ARG ARG ASN SER LEU VAL ASN VAL GLU LEU SEQRES 7 K 447 TRP THR ILE ILE GLN LYS HIS TYR PRO ARG GLU CYS LYS SEQRES 8 K 447 LEU ARG ALA SER GLY SER GLY SER GLY SER GLY SER ALA SEQRES 9 K 447 LEU LYS ARG ILE ASN LYS GLU LEU SER ASP LEU ALA ARG SEQRES 10 K 447 ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL GLY ASP SEQRES 11 K 447 ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY PRO ASN SEQRES 12 K 447 ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU THR ILE SEQRES 13 K 447 HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO LYS VAL SEQRES 14 K 447 ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE ASN SER SEQRES 15 K 447 ASN GLY SER ILE LYS LEU ASP ILE LEU ARG SER GLN TRP SEQRES 16 K 447 SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU SER ILE SEQRES 17 K 447 CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP PRO LEU SEQRES 18 K 447 VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP ARG ASP SEQRES 19 K 447 LYS TYR ASN ARG ILE SER ARG GLU TRP THR GLN LYS TYR SEQRES 20 K 447 ALA MET GLY SER GLY GLY SER GLY GLY SER GLY SER GLY SEQRES 21 K 447 SER ARG LYS GLU SER TYR SER ILE TYR VAL TYR LYS VAL SEQRES 22 K 447 LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER LYS SEQRES 23 K 447 ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE PHE SEQRES 24 K 447 GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS TYR SEQRES 25 K 447 ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN THR SEQRES 26 K 447 ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS HIS SEQRES 27 K 447 ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR THR SEQRES 28 K 447 SER SER ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 29 K 447 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 30 K 447 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 31 K 447 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 32 K 447 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 33 K 447 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 34 K 447 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 35 K 447 THR ILE ALA GLN GLY HET NA K4001 1 HET NA K4002 1 HET ZN K4003 1 HET ZN K4004 1 HET CL K4005 1 HET CL K4006 1 HET CL K4007 1 HET CL K4008 1 HET NA K4009 1 HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 NA 3(NA 1+) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 CL 4(CL 1-) FORMUL 11 HOH *251(H2 O) HELIX 1 AA1 LYS K 37 VAL K 44 1 8 HELIX 2 AA2 VAL K 58 ARG K 67 1 10 HELIX 3 AA3 ASN K 73 TYR K 84 1 12 HELIX 4 AA4 TYR K 84 GLY K 94 1 11 HELIX 5 AA5 SER K 101 ASP K 1016 1 16 HELIX 6 AA6 LEU K 1086 ARG K 1090 5 5 HELIX 7 AA7 THR K 1098 ASP K 1112 1 15 HELIX 8 AA8 VAL K 1120 ASP K 1130 1 11 HELIX 9 AA9 ASP K 1130 ALA K 1146 1 17 HELIX 10 AB1 TYR K 2037 HIS K 2049 1 13 HELIX 11 AB2 SER K 2055 ASN K 2084 1 30 HELIX 12 AB3 THR K 2090 LEU K 2102 1 13 HELIX 13 AB4 PRO K 2103 SER K 2123 1 21 HELIX 14 AB5 THR K 3016 GLY K 3022 1 7 HELIX 15 AB6 PRO K 3026 GLY K 3037 1 12 HELIX 16 AB7 ALA K 3045 ASN K 3073 1 29 HELIX 17 AB8 ILE K 3079 ASN K 3089 1 11 HELIX 18 AB9 ASP K 3090 GLY K 3098 1 9 SHEET 1 AA1 2 GLN K 15 CYS K 16 0 SHEET 2 AA1 2 GLU K 21 ILE K 22 -1 O GLU K 21 N CYS K 16 SHEET 1 AA2 2 PRO K 26 THR K 28 0 SHEET 2 AA2 2 THR K 34 CYS K 36 -1 O LEU K 35 N VAL K 27 SHEET 1 AA3 4 CYS K1021 VAL K1026 0 SHEET 2 AA3 4 ASP K1029 MET K1038 -1 O HIS K1032 N VAL K1026 SHEET 3 AA3 4 VAL K1049 HIS K1055 -1 O PHE K1050 N ILE K1037 SHEET 4 AA3 4 LYS K1066 PHE K1069 -1 O ALA K1068 N THR K1053 SHEET 1 AA4 2 GLY K2053 ILE K2054 0 SHEET 2 AA4 2 ARG K3077 ILE K3078 1 O ILE K3078 N GLY K2053 SHEET 1 AA5 2 THR K2088 ILE K2089 0 SHEET 2 AA5 2 ARG K3042 VAL K3043 1 O ARG K3042 N ILE K2089 LINK OE1 GLU K 13 NA NA K4002 1555 1555 2.27 LINK SG CYS K 16 ZN ZN K4004 1555 1555 2.91 LINK SG CYS K 19 ZN ZN K4004 1555 1555 2.44 LINK O ILE K 22 NA NA K4001 1555 1555 2.27 LINK SG CYS K 31 ZN ZN K4003 1555 1555 2.29 LINK ND1 HIS K 33 ZN ZN K4003 1555 1555 2.10 LINK SG CYS K 36 ZN ZN K4004 1555 1555 2.47 LINK SG CYS K 39 ZN ZN K4004 1555 1555 2.08 LINK SG CYS K 51 ZN ZN K4003 1555 1555 2.43 LINK SG CYS K 54 ZN ZN K4003 1555 1555 2.34 LINK OG SER K1152 NA NA K4009 1555 1555 2.74 LINK O GLY K1153 NA NA K4009 1555 1555 2.20 LINK OD1 ASN K3038 NA NA K4009 1555 1555 2.31 LINK NA NA K4001 O HOH K5241 1555 1555 2.41 LINK NA NA K4002 O HOH K5103 1555 6454 2.81 LINK NA NA K4009 O HOH K5077 1555 1555 2.36 LINK NA NA K4009 O HOH K5083 1555 1555 2.46 LINK NA NA K4009 O HOH K5157 1555 1555 2.67 CISPEP 1 TYR K 1060 PRO K 1061 0 4.98 CRYST1 102.953 102.953 87.231 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009713 0.005608 0.000000 0.00000 SCALE2 0.000000 0.011216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011464 0.00000