HEADER PEPTIDE BINDING PROTEIN 31-OCT-23 8UTX TITLE SOLUTION STRUCTURE OF A 12-MER PEPTIDE BEARING A BICYCLIC ASX MOTIF TITLE 2 MIMIC (BAMM) AS A SYNTHETIC N-CAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRP-CYS-ASP-ALA-ALA-CYS-CYS-ALA-ALA-ALA-LYS-ALA-NH2 COMPND 3 PEPTIDE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS HELIX, SYNTHETIC N-CAP, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR T.X.MI,K.BURGESS REVDAT 2 23-OCT-24 8UTX 1 REMARK REVDAT 1 05-JUN-24 8UTX 0 JRNL AUTH T.MI,D.NGUYEN,Z.GAO,K.BURGESS JRNL TITL BIOINFORMATICS LEADING TO CONVENIENTLY ACCESSIBLE, HELIX JRNL TITL 2 ENFORCING, BICYCLIC ASX MOTIF MIMICS (BAMMS). JRNL REF NAT COMMUN V. 15 4217 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38760359 JRNL DOI 10.1038/S41467-024-48323-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MACROMODEL REMARK 3 AUTHORS : SCHRODINGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278769. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 306 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : WATER/TFE REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 5 MM NCAP-12-MER, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D; 2D COSY; 2D TOCSY; 2D ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 5888 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 13 CYS A 330 50.82 -67.54 REMARK 500 14 CYS A 330 51.04 -67.49 REMARK 500 16 CYS A 330 50.90 -67.44 REMARK 500 17 CYS A 330 50.68 -67.74 REMARK 500 20 CYS A 330 51.07 -67.43 REMARK 500 21 CYS A 330 10.90 60.00 REMARK 500 22 CYS A 330 50.84 -67.52 REMARK 500 23 CYS A 330 58.92 -66.10 REMARK 500 24 CYS A 330 58.52 -66.09 REMARK 500 26 CYS A 330 58.66 -66.12 REMARK 500 28 CYS A 330 51.04 -67.50 REMARK 500 31 CYS A 330 51.04 -67.53 REMARK 500 33 CYS A 330 50.67 -67.61 REMARK 500 34 CYS A 330 58.61 -66.07 REMARK 500 35 CYS A 330 50.94 -67.49 REMARK 500 38 CYS A 330 58.54 -66.11 REMARK 500 39 CYS A 330 11.09 59.89 REMARK 500 44 CYS A 330 50.77 -67.57 REMARK 500 45 CYS A 330 51.26 -67.40 REMARK 500 46 CYS A 330 50.95 -67.45 REMARK 500 48 CYS A 330 52.02 -67.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31123 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF A 12-MER PEPTIDE BEARING A BICYCLIC ASX MOTIF REMARK 900 MIMIC (BAMM) AS A SYNTHETIC N-CAP DBREF 8UTX A 329 341 PDB 8UTX 8UTX 329 341 SEQRES 1 A 13 TRP CYS ASP ALA ALA CYS CYS ALA ALA ALA LYS ALA NH2 HET NH2 A 341 3 HET ZBR A 401 18 HETNAM NH2 AMINO GROUP HETNAM ZBR 1,3,5-TRIS(BROMOMETHYL)BENZENE FORMUL 1 NH2 H2 N FORMUL 2 ZBR C9 H9 BR3 HELIX 1 AA1 ASP A 331 ALA A 340 1 10 LINK SG CYS A 330 C8 ZBR A 401 1555 1555 1.82 LINK SG CYS A 334 C7 ZBR A 401 1555 1555 1.83 LINK SG CYS A 335 C9 ZBR A 401 1555 1555 1.83 LINK C ALA A 340 N NH2 A 341 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1