HEADER METAL BINDING PROTEIN 13-NOV-23 8UYN TITLE FUNDAMENTAL CHARACTERIZATION OF CHELATED AND CRYSTALLIZED ACTINIUM IN TITLE 2 A MACROMOLECULAR HOST COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.B.RUPERT,R.K.STRONG REVDAT 1 25-SEP-24 8UYN 0 JRNL AUTH J.N.WACKER,J.J.WOODS,P.B.RUPERT,A.PETERSON,M.ALLAIRE, JRNL AUTH 2 W.W.LUKENS,A.N.GAISER,S.G.MINASIAN,R.K.STRONG,R.J.ABERGEL JRNL TITL ACTINIUM CHELATION AND CRYSTALLIZATION IN A MACROMOLECULAR JRNL TITL 2 SCAFFOLD. JRNL REF NAT COMMUN V. 15 5741 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39009580 JRNL DOI 10.1038/S41467-024-50017-5 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 188 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.296 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4509 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4172 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6144 ; 1.493 ; 1.704 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9614 ; 1.248 ; 1.615 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 531 ; 6.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;33.248 ;23.288 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;13.995 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5110 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1092 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2083 ; 1.375 ; 2.449 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2082 ; 1.364 ; 2.448 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2603 ; 2.232 ; 3.654 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2604 ; 2.232 ; 3.655 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2426 ; 1.620 ; 2.767 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2423 ; 1.620 ; 2.762 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3527 ; 2.660 ; 4.069 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4824 ; 4.546 ;28.649 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4802 ; 4.492 ;28.499 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 5304 0.08 0.05 REMARK 3 2 A C 5329 0.09 0.05 REMARK 3 3 B C 5227 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4297 75.4210 57.1945 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0975 REMARK 3 T33: 0.0472 T12: 0.0312 REMARK 3 T13: 0.0054 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.3183 L22: 3.1097 REMARK 3 L33: 2.1195 L12: -0.7594 REMARK 3 L13: 0.2179 L23: 0.6917 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: -0.0075 S13: -0.0685 REMARK 3 S21: 0.0731 S22: -0.1361 S23: -0.0197 REMARK 3 S31: -0.0789 S32: -0.3712 S33: 0.0832 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 52.2475 100.1500 35.4187 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0429 REMARK 3 T33: 0.0207 T12: 0.0455 REMARK 3 T13: -0.0298 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.7735 L22: 1.5126 REMARK 3 L33: 3.1366 L12: 0.0608 REMARK 3 L13: 0.0840 L23: -0.7166 REMARK 3 S TENSOR REMARK 3 S11: 0.0962 S12: 0.1100 S13: -0.0925 REMARK 3 S21: -0.0754 S22: -0.0395 S23: -0.0100 REMARK 3 S31: 0.1288 S32: 0.1182 S33: -0.0567 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 301 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2339 46.9763 41.4308 REMARK 3 T TENSOR REMARK 3 T11: 0.0164 T22: 0.0175 REMARK 3 T33: 0.0257 T12: -0.0070 REMARK 3 T13: -0.0001 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.6799 L22: 1.2841 REMARK 3 L33: 1.8346 L12: 0.1021 REMARK 3 L13: 0.3576 L23: -0.3213 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0881 S13: -0.0509 REMARK 3 S21: -0.0058 S22: -0.0145 S23: -0.0461 REMARK 3 S31: 0.1510 S32: 0.0027 S33: 0.0163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8UYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.031 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETATE (PH 4), NACL, LI2SO4, AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.78100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.07400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.07400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.39050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.07400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.07400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.17150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.07400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.07400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.39050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.07400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.07400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.17150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.78100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLY A 178 REMARK 465 GLN B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 GLU B 44 REMARK 465 ASP B 45 REMARK 465 LYS B 46 REMARK 465 ASP B 47 REMARK 465 GLY B 178 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 GLU C 44 REMARK 465 ASP C 45 REMARK 465 LYS C 46 REMARK 465 GLY C 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 SER B 146 OG REMARK 470 THR C 4 OG1 CG2 REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 47 CG OD1 OD2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 LYS C 98 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O53 4OL A 301 O HOH A 401 2.14 REMARK 500 O53 4OL C 203 O HOH C 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 23 O1 PIN C 201 8665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -37.76 69.63 REMARK 500 GLN A 117 -49.16 -139.68 REMARK 500 CYS A 175 -42.09 77.75 REMARK 500 TYR B 115 -37.63 71.84 REMARK 500 GLN B 117 -49.70 -138.40 REMARK 500 CYS B 175 -44.03 76.60 REMARK 500 TYR C 115 -38.41 69.97 REMARK 500 GLN C 117 -50.68 -137.85 REMARK 500 CYS C 175 -42.55 76.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA A 300 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 4OL A 301 N45 REMARK 620 2 4OL A 301 O51 46.4 REMARK 620 3 4OL A 301 O50 24.9 68.6 REMARK 620 4 4OL A 301 N27 113.4 116.3 94.7 REMARK 620 5 4OL A 301 O49 94.0 75.1 91.0 43.0 REMARK 620 6 4OL A 301 O47 61.8 83.7 69.3 148.6 155.3 REMARK 620 7 4OL A 301 N3 148.4 109.1 170.1 94.9 97.7 101.1 REMARK 620 8 4OL A 301 O9 105.5 70.7 129.8 129.6 105.6 78.4 43.0 REMARK 620 9 4OL A 301 O46 99.6 142.4 83.2 89.4 131.6 62.7 94.4 114.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA B 201 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 4OL B 202 N27 REMARK 620 2 4OL B 202 O48 23.6 REMARK 620 3 4OL B 202 O46 90.9 67.5 REMARK 620 4 4OL B 202 N45 113.8 110.6 94.2 REMARK 620 5 4OL B 202 O50 95.6 88.4 80.2 23.0 REMARK 620 6 4OL B 202 O51 118.7 134.0 134.8 44.2 64.5 REMARK 620 7 4OL B 202 O49 44.5 67.0 134.0 95.6 92.2 77.2 REMARK 620 8 4OL B 202 N3 91.8 100.1 103.9 148.5 171.5 108.1 90.2 REMARK 620 9 4OL B 202 O9 122.9 139.9 126.0 105.9 128.9 67.6 93.9 42.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA C 202 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 4OL C 203 O46 REMARK 620 2 4OL C 203 O50 81.2 REMARK 620 3 4OL C 203 N27 88.8 92.9 REMARK 620 4 4OL C 203 O48 66.2 87.0 22.8 REMARK 620 5 4OL C 203 O49 130.9 91.4 42.8 65.0 REMARK 620 6 4OL C 203 N35 23.5 69.7 109.4 86.7 147.2 REMARK 620 7 4OL C 203 O47 66.0 73.7 152.7 130.4 156.4 43.9 REMARK 620 8 4OL C 203 O51 142.8 68.7 113.2 130.4 72.8 120.6 84.5 REMARK 620 9 4OL C 203 N3 102.6 172.3 93.9 100.6 91.1 111.3 101.5 105.2 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 8UYN A 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 8UYN B 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 8UYN C 1 178 UNP P80188 NGAL_HUMAN 21 198 SEQADV 8UYN SER A 87 UNP P80188 CYS 107 CONFLICT SEQADV 8UYN SER B 87 UNP P80188 CYS 107 CONFLICT SEQADV 8UYN SER C 87 UNP P80188 CYS 107 CONFLICT SEQRES 1 A 178 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 A 178 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 A 178 PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA GLY ASN SEQRES 4 A 178 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET TYR SEQRES 5 A 178 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 A 178 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 A 178 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 A 178 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 A 178 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 A 178 HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN ASN ARG SEQRES 11 A 178 GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 A 178 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 A 178 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 A 178 VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 B 178 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 B 178 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 B 178 PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA GLY ASN SEQRES 4 B 178 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET TYR SEQRES 5 B 178 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 B 178 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 B 178 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 B 178 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 B 178 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 B 178 HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN ASN ARG SEQRES 11 B 178 GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 B 178 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 B 178 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 B 178 VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 C 178 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 C 178 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 C 178 PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA GLY ASN SEQRES 4 C 178 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET TYR SEQRES 5 C 178 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 C 178 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 C 178 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 C 178 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 C 178 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 C 178 HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN ASN ARG SEQRES 11 C 178 GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 C 178 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 C 178 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 C 178 VAL PRO ILE ASP GLN CYS ILE ASP GLY HET LA A 300 1 HET 4OL A 301 54 HET LA B 201 1 HET 4OL B 202 54 HET SO4 B 203 5 HET PIN C 201 18 HET LA C 202 1 HET 4OL C 203 54 HETNAM LA LANTHANUM (III) ION HETNAM 4OL N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-N-(3-{[(1-HYDROXY-6- HETNAM 2 4OL OXO-1,6-DIHYDROPYRIDIN-2-YL)CARBONYL]AMINO}PROPYL)-6- HETNAM 3 4OL OXO-1,6-DIHYDROPYRIDINE-2-CARBOXAMIDE] HETNAM SO4 SULFATE ION HETNAM PIN PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) HETSYN PIN PIPES; 1,4-PIPERAZINEDIETHANESULFONIC ACID FORMUL 4 LA 3(LA 3+) FORMUL 5 4OL 3(C34 H38 N8 O12) FORMUL 8 SO4 O4 S 2- FORMUL 9 PIN C8 H18 N2 O6 S2 FORMUL 12 HOH *167(H2 O) HELIX 1 AA1 PRO A 12 VAL A 16 5 5 HELIX 2 AA2 ASN A 96 TYR A 100 5 5 HELIX 3 AA3 THR A 145 LEU A 159 1 15 HELIX 4 AA4 PRO A 162 ASN A 164 5 3 HELIX 5 AA5 PRO B 12 VAL B 16 5 5 HELIX 6 AA6 GLN B 23 GLN B 28 1 6 HELIX 7 AA7 ASN B 96 TYR B 100 5 5 HELIX 8 AA8 THR B 145 LEU B 159 1 15 HELIX 9 AA9 PRO B 162 ASN B 164 5 3 HELIX 10 AB1 PRO C 12 VAL C 16 5 5 HELIX 11 AB2 GLN C 23 GLN C 28 1 6 HELIX 12 AB3 ASN C 96 TYR C 100 5 5 HELIX 13 AB4 THR C 145 LEU C 159 1 15 HELIX 14 AB5 PRO C 162 ASN C 164 5 3 SHEET 1 AA110 ILE A 166 VAL A 167 0 SHEET 2 AA110 GLY A 29 GLY A 38 -1 N LEU A 36 O VAL A 167 SHEET 3 AA110 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 AA110 HIS A 118 SER A 127 -1 N LYS A 125 O TYR A 132 SHEET 5 AA110 LEU A 103 THR A 113 -1 N LEU A 107 O LYS A 124 SHEET 6 AA110 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 AA110 LYS A 75 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 AA110 TYR A 64 ARG A 72 -1 N LEU A 70 O ASP A 77 SHEET 9 AA110 ALA A 53 LEU A 58 -1 N ILE A 55 O THR A 67 SHEET 10 AA110 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SHEET 1 AA210 ILE B 166 VAL B 167 0 SHEET 2 AA210 GLY B 29 GLY B 38 -1 N LEU B 36 O VAL B 167 SHEET 3 AA210 ARG B 130 GLY B 139 -1 O GLY B 139 N TYR B 32 SHEET 4 AA210 HIS B 118 SER B 127 -1 N LYS B 125 O TYR B 132 SHEET 5 AA210 LEU B 103 THR B 113 -1 N LEU B 107 O LYS B 124 SHEET 6 AA210 GLU B 91 LEU B 94 -1 N PHE B 92 O VAL B 108 SHEET 7 AA210 LYS B 75 PRO B 85 -1 N VAL B 84 O THR B 93 SHEET 8 AA210 TYR B 64 ARG B 72 -1 N LEU B 70 O ASP B 77 SHEET 9 AA210 ALA B 53 LEU B 58 -1 N ILE B 55 O THR B 67 SHEET 10 AA210 GLY B 29 GLY B 38 -1 N GLY B 29 O TYR B 56 SHEET 1 AA310 ILE C 166 VAL C 167 0 SHEET 2 AA310 GLY C 29 GLY C 38 -1 N LEU C 36 O VAL C 167 SHEET 3 AA310 ARG C 130 GLY C 139 -1 O GLY C 139 N TYR C 32 SHEET 4 AA310 HIS C 118 SER C 127 -1 N VAL C 121 O THR C 136 SHEET 5 AA310 LEU C 103 THR C 113 -1 N LEU C 107 O LYS C 124 SHEET 6 AA310 GLU C 91 LEU C 94 -1 N PHE C 92 O VAL C 108 SHEET 7 AA310 LYS C 75 PRO C 85 -1 N VAL C 84 O THR C 93 SHEET 8 AA310 TYR C 64 ARG C 72 -1 N LEU C 70 O ASP C 77 SHEET 9 AA310 ALA C 53 LEU C 58 -1 N ILE C 55 O THR C 67 SHEET 10 AA310 GLY C 29 GLY C 38 -1 N GLY C 29 O TYR C 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.07 SSBOND 2 CYS B 76 CYS B 175 1555 1555 2.09 SSBOND 3 CYS C 76 CYS C 175 1555 1555 2.11 LINK LA LA A 300 N45 4OL A 301 1555 1555 3.12 LINK LA LA A 300 O51 4OL A 301 1555 1555 2.67 LINK LA LA A 300 O50 4OL A 301 1555 1555 2.26 LINK LA LA A 300 N27 4OL A 301 1555 1555 3.40 LINK LA LA A 300 O49 4OL A 301 1555 1555 2.62 LINK LA LA A 300 O47 4OL A 301 1555 1555 2.76 LINK LA LA A 300 N3 4OL A 301 1555 1555 3.42 LINK LA LA A 300 O9 4OL A 301 1555 1555 2.65 LINK LA LA A 300 O46 4OL A 301 1555 1555 2.68 LINK LA LA A 300 O48 4OL A 301 1555 1555 2.68 LINK LA LA A 300 O10 4OL A 301 1555 1555 2.64 LINK LA LA A 300 N35 4OL A 301 1555 1555 3.46 LINK LA LA B 201 N27 4OL B 202 1555 1555 3.30 LINK LA LA B 201 O48 4OL B 202 1555 1555 2.51 LINK LA LA B 201 O46 4OL B 202 1555 1555 2.45 LINK LA LA B 201 N45 4OL B 202 1555 1555 3.31 LINK LA LA B 201 O50 4OL B 202 1555 1555 2.44 LINK LA LA B 201 O51 4OL B 202 1555 1555 2.68 LINK LA LA B 201 O49 4OL B 202 1555 1555 2.63 LINK LA LA B 201 N3 4OL B 202 1555 1555 3.36 LINK LA LA B 201 O9 4OL B 202 1555 1555 2.45 LINK LA LA B 201 O10 4OL B 202 1555 1555 2.52 LINK LA LA B 201 O47 4OL B 202 1555 1555 2.76 LINK LA LA B 201 N35 4OL B 202 1555 1555 3.37 LINK LA LA C 202 O46 4OL C 203 1555 1555 2.36 LINK LA LA C 202 O50 4OL C 203 1555 1555 2.11 LINK LA LA C 202 N27 4OL C 203 1555 1555 3.34 LINK LA LA C 202 O48 4OL C 203 1555 1555 2.59 LINK LA LA C 202 O49 4OL C 203 1555 1555 2.60 LINK LA LA C 202 N35 4OL C 203 1555 1555 3.27 LINK LA LA C 202 O47 4OL C 203 1555 1555 2.64 LINK LA LA C 202 O51 4OL C 203 1555 1555 2.60 LINK LA LA C 202 N3 4OL C 203 1555 1555 3.27 LINK LA LA C 202 O9 4OL C 203 1555 1555 2.39 LINK LA LA C 202 O10 4OL C 203 1555 1555 2.34 LINK LA LA C 202 N45 4OL C 203 1555 1555 3.00 CRYST1 116.148 116.148 117.562 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008506 0.00000