HEADER HYDROLASE 17-NOV-23 8V05 TITLE CRYSTAL STRUCTURE OF MOUSE PLD3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-3' EXONUCLEASE PLD3; COMPND 3 CHAIN: A; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PLD3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PLD3, PHOSPHOLIPASE, PHOSPHOHISTIDINE, NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YUAN,X.ZHU,I.A.WILSON REVDAT 2 17-APR-24 8V05 1 JRNL REVDAT 1 13-MAR-24 8V05 0 JRNL AUTH M.YUAN,L.PENG,D.HUANG,A.GAVIN,F.LUAN,J.TRAN,Z.FENG,X.ZHU, JRNL AUTH 2 J.MATTESON,I.A.WILSON,D.NEMAZEE JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO DISEASE-ASSOCIATED JRNL TITL 2 ENDOLYSOSOMAL EXONUCLEASES PLD3 AND PLD4. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38537643 JRNL DOI 10.1016/J.STR.2024.02.019 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0800 - 4.7600 1.00 2852 162 0.1743 0.2028 REMARK 3 2 4.7600 - 3.7800 1.00 2753 125 0.1575 0.1948 REMARK 3 3 3.7800 - 3.3000 1.00 2756 134 0.2035 0.2456 REMARK 3 4 3.3000 - 3.0000 1.00 2719 128 0.2198 0.2381 REMARK 3 5 3.0000 - 2.7900 1.00 2677 137 0.2297 0.3001 REMARK 3 6 2.7900 - 2.6200 1.00 2701 115 0.2556 0.2492 REMARK 3 7 2.6200 - 2.4900 1.00 2677 154 0.2348 0.3021 REMARK 3 8 2.4900 - 2.3800 1.00 2697 143 0.2526 0.3297 REMARK 3 9 2.3800 - 2.2900 1.00 2635 130 0.2418 0.2992 REMARK 3 10 2.2900 - 2.2100 1.00 2700 144 0.3086 0.3118 REMARK 3 11 2.2100 - 2.1400 1.00 2653 131 0.2719 0.3621 REMARK 3 12 2.1400 - 2.0800 0.99 2607 176 0.2897 0.2966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3637 REMARK 3 ANGLE : 0.564 4958 REMARK 3 CHIRALITY : 0.040 582 REMARK 3 PLANARITY : 0.005 627 REMARK 3 DIHEDRAL : 6.513 575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350, 0.5 MM MAGNESIUM REMARK 280 CHLORIDE, 0.133 M DI-AMMONIUM TARTRATE, PH 6.6, 15% W/V ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.91267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.45633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.45633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.91267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -72.91267 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 GLY A 28 REMARK 465 PRO A 29 REMARK 465 LEU A 30 REMARK 465 VAL A 31 REMARK 465 ASP A 32 REMARK 465 VAL A 33 REMARK 465 ALA A 34 REMARK 465 SER A 35 REMARK 465 ASN A 36 REMARK 465 GLU A 37 REMARK 465 GLN A 38 REMARK 465 LYS A 39 REMARK 465 LEU A 40 REMARK 465 ILE A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 ASP A 45 REMARK 465 LEU A 46 REMARK 465 ALA A 47 REMARK 465 SER A 48 REMARK 465 MET A 49 REMARK 465 THR A 50 REMARK 465 GLY A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 GLN A 54 REMARK 465 MET A 55 REMARK 465 GLY A 56 REMARK 465 ARG A 57 REMARK 465 ASP A 58 REMARK 465 ILE A 59 REMARK 465 GLU A 60 REMARK 465 GLY A 61 REMARK 465 ARG A 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 143 O HOH A 601 1.98 REMARK 500 O SER A 140 O HOH A 601 1.99 REMARK 500 OG SER A 432 O HOH A 602 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 65 -8.17 72.51 REMARK 500 ASN A 97 -74.64 -82.91 REMARK 500 ALA A 98 57.54 30.63 REMARK 500 ASN A 169 53.87 -93.77 REMARK 500 THR A 208 -38.64 -130.85 REMARK 500 PHE A 333 -157.06 -95.38 REMARK 500 SER A 334 74.30 66.47 REMARK 500 ARG A 411 62.43 62.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 8V05 A 63 488 UNP O35405 PLD3_MOUSE 63 488 SEQADV 8V05 HIS A 22 UNP O35405 EXPRESSION TAG SEQADV 8V05 HIS A 23 UNP O35405 EXPRESSION TAG SEQADV 8V05 HIS A 24 UNP O35405 EXPRESSION TAG SEQADV 8V05 HIS A 25 UNP O35405 EXPRESSION TAG SEQADV 8V05 HIS A 26 UNP O35405 EXPRESSION TAG SEQADV 8V05 HIS A 27 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLY A 28 UNP O35405 EXPRESSION TAG SEQADV 8V05 PRO A 29 UNP O35405 EXPRESSION TAG SEQADV 8V05 LEU A 30 UNP O35405 EXPRESSION TAG SEQADV 8V05 VAL A 31 UNP O35405 EXPRESSION TAG SEQADV 8V05 ASP A 32 UNP O35405 EXPRESSION TAG SEQADV 8V05 VAL A 33 UNP O35405 EXPRESSION TAG SEQADV 8V05 ALA A 34 UNP O35405 EXPRESSION TAG SEQADV 8V05 SER A 35 UNP O35405 EXPRESSION TAG SEQADV 8V05 ASN A 36 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLU A 37 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLN A 38 UNP O35405 EXPRESSION TAG SEQADV 8V05 LYS A 39 UNP O35405 EXPRESSION TAG SEQADV 8V05 LEU A 40 UNP O35405 EXPRESSION TAG SEQADV 8V05 ILE A 41 UNP O35405 EXPRESSION TAG SEQADV 8V05 SER A 42 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLU A 43 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLU A 44 UNP O35405 EXPRESSION TAG SEQADV 8V05 ASP A 45 UNP O35405 EXPRESSION TAG SEQADV 8V05 LEU A 46 UNP O35405 EXPRESSION TAG SEQADV 8V05 ALA A 47 UNP O35405 EXPRESSION TAG SEQADV 8V05 SER A 48 UNP O35405 EXPRESSION TAG SEQADV 8V05 MET A 49 UNP O35405 EXPRESSION TAG SEQADV 8V05 THR A 50 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLY A 51 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLY A 52 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLN A 53 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLN A 54 UNP O35405 EXPRESSION TAG SEQADV 8V05 MET A 55 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLY A 56 UNP O35405 EXPRESSION TAG SEQADV 8V05 ARG A 57 UNP O35405 EXPRESSION TAG SEQADV 8V05 ASP A 58 UNP O35405 EXPRESSION TAG SEQADV 8V05 ILE A 59 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLU A 60 UNP O35405 EXPRESSION TAG SEQADV 8V05 GLY A 61 UNP O35405 EXPRESSION TAG SEQADV 8V05 ARG A 62 UNP O35405 EXPRESSION TAG SEQRES 1 A 467 HIS HIS HIS HIS HIS HIS GLY PRO LEU VAL ASP VAL ALA SEQRES 2 A 467 SER ASN GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ALA SEQRES 3 A 467 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP ILE GLU SEQRES 4 A 467 GLY ARG GLY ASP LEU HIS LEU PHE GLY PRO ASN GLN ARG SEQRES 5 A 467 PRO ALA PRO CYS TYR ASP PRO CYS GLU ALA VAL LEU VAL SEQRES 6 A 467 GLU SER ILE PRO GLU GLY LEU GLU PHE PRO ASN ALA THR SEQRES 7 A 467 THR SER ASN PRO SER THR SER GLN ALA TRP LEU GLY LEU SEQRES 8 A 467 LEU ALA GLY ALA HIS SER SER LEU ASP ILE ALA SER PHE SEQRES 9 A 467 TYR TRP THR LEU THR ASN ASN ASP THR HIS THR GLN GLU SEQRES 10 A 467 PRO SER ALA GLN GLN GLY GLU GLU VAL LEU GLN GLN LEU SEQRES 11 A 467 GLN ALA LEU ALA PRO ARG GLY VAL LYS VAL ARG ILE ALA SEQRES 12 A 467 VAL SER LYS PRO ASN GLY PRO LEU ALA ASP LEU GLN SER SEQRES 13 A 467 LEU LEU GLN SER GLY ALA GLN VAL ARG MET VAL ASP MET SEQRES 14 A 467 GLN LYS LEU THR HIS GLY VAL LEU HIS THR LYS PHE TRP SEQRES 15 A 467 VAL VAL ASP GLN THR HIS PHE TYR LEU GLY SER ALA ASN SEQRES 16 A 467 MET ASP TRP ARG SER LEU THR GLN VAL LYS GLU LEU GLY SEQRES 17 A 467 VAL VAL MET TYR ASN CYS SER CYS LEU ALA ARG ASP LEU SEQRES 18 A 467 THR LYS ILE PHE GLU ALA TYR TRP PHE LEU GLY GLN ALA SEQRES 19 A 467 GLY SER SER ILE PRO SER THR TRP PRO ARG SER PHE ASP SEQRES 20 A 467 THR ARG TYR ASN GLN GLU THR PRO MET GLU ILE CYS LEU SEQRES 21 A 467 ASN GLY THR PRO ALA LEU ALA TYR LEU ALA SER ALA PRO SEQRES 22 A 467 PRO PRO LEU CYS PRO SER GLY ARG THR PRO ASP LEU LYS SEQRES 23 A 467 ALA LEU LEU ASN VAL VAL ASP SER ALA ARG SER PHE ILE SEQRES 24 A 467 TYR ILE ALA VAL MET ASN TYR LEU PRO THR MET GLU PHE SEQRES 25 A 467 SER HIS PRO ARG ARG PHE TRP PRO ALA ILE ASP ASP GLY SEQRES 26 A 467 LEU ARG ARG ALA ALA TYR GLU ARG GLY VAL LYS VAL ARG SEQRES 27 A 467 LEU LEU ILE SER CYS TRP GLY HIS SER ASP PRO SER MET SEQRES 28 A 467 ARG SER PHE LEU LEU SER LEU ALA ALA LEU HIS ASP ASN SEQRES 29 A 467 HIS THR HIS SER ASP ILE GLN VAL LYS LEU PHE VAL VAL SEQRES 30 A 467 PRO THR ASP GLU SER GLN ALA ARG ILE PRO TYR ALA ARG SEQRES 31 A 467 VAL ASN HIS ASN LYS TYR MET VAL THR GLU ARG ALA SER SEQRES 32 A 467 TYR ILE GLY THR SER ASN TRP SER GLY SER TYR PHE THR SEQRES 33 A 467 GLU THR ALA GLY THR SER LEU LEU VAL THR GLN ASN GLY SEQRES 34 A 467 HIS GLY GLY LEU ARG SER GLN LEU GLU ALA VAL PHE LEU SEQRES 35 A 467 ARG ASP TRP GLU SER PRO TYR SER HIS ASP LEU ASP THR SEQRES 36 A 467 SER ALA ASN SER VAL GLY ASN ALA CYS ARG LEU LEU HET NAG B 1 26 HET NAG B 2 26 HET BMA B 3 21 HET NAG C 1 26 HET NAG C 2 27 HET NAG D 1 26 HET NAG D 2 26 HET BMA D 3 19 HET MAN D 4 19 HET MAN D 5 21 HET MAN D 6 21 HET MAN D 7 21 HET EDO A 501 10 HET EDO A 502 10 HET ACT A 503 7 HET CYS A 504 10 HET EDO A 505 10 HET TLA A 506 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM CYS CYSTEINE HETNAM TLA L(+)-TARTARIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 CYS C3 H7 N O2 S FORMUL 10 TLA C4 H6 O6 FORMUL 11 HOH *199(H2 O) HELIX 1 AA1 SER A 104 ALA A 116 1 13 HELIX 2 AA2 THR A 130 HIS A 135 1 6 HELIX 3 AA3 GLU A 138 SER A 140 5 3 HELIX 4 AA4 ALA A 141 ALA A 153 1 13 HELIX 5 AA5 LEU A 154 GLY A 158 5 5 HELIX 6 AA6 LEU A 172 GLY A 182 1 11 HELIX 7 AA7 ASP A 189 HIS A 195 1 7 HELIX 8 AA8 TRP A 219 GLN A 224 1 6 HELIX 9 AA9 CYS A 235 GLY A 253 1 19 HELIX 10 AB1 PRO A 264 ASP A 268 5 5 HELIX 11 AB2 PRO A 294 CYS A 298 5 5 HELIX 12 AB3 PRO A 304 ALA A 316 1 13 HELIX 13 AB4 PRO A 341 GLY A 355 1 15 HELIX 14 AB5 SER A 371 ALA A 381 1 11 HELIX 15 AB6 ASP A 401 ARG A 406 1 6 HELIX 16 AB7 GLY A 433 GLU A 438 1 6 HELIX 17 AB8 GLY A 452 SER A 468 1 17 HELIX 18 AB9 SER A 477 VAL A 481 5 5 SHEET 1 AA116 GLN A 184 VAL A 188 0 SHEET 2 AA116 LYS A 160 SER A 166 1 N VAL A 161 O GLN A 184 SHEET 3 AA116 SER A 119 SER A 124 1 N ILE A 122 O ALA A 164 SHEET 4 AA116 PHE A 202 VAL A 205 -1 O PHE A 202 N ALA A 123 SHEET 5 AA116 HIS A 209 GLY A 213 -1 O HIS A 209 N VAL A 205 SHEET 6 AA116 GLU A 227 TYR A 233 -1 O MET A 232 N PHE A 210 SHEET 7 AA116 PRO A 80 SER A 88 -1 N GLU A 82 O TYR A 233 SHEET 8 AA116 MET A 277 LEU A 281 1 N CYS A 280 O CYS A 81 SHEET 9 AA116 THR A 284 ALA A 293 -1 O ALA A 286 N ILE A 279 SHEET 10 AA116 GLY A 441 THR A 447 -1 O THR A 447 N LEU A 287 SHEET 11 AA116 ALA A 423 GLY A 427 -1 N ILE A 426 O LEU A 444 SHEET 12 AA116 LYS A 416 THR A 420 -1 N MET A 418 O TYR A 425 SHEET 13 AA116 PHE A 319 VAL A 324 -1 N TYR A 321 O VAL A 419 SHEET 14 AA116 LYS A 357 SER A 363 1 O LEU A 361 N ILE A 322 SHEET 15 AA116 ASP A 390 PHE A 396 1 O ASP A 390 N VAL A 358 SHEET 16 AA116 SER A 471 HIS A 472 -1 O HIS A 472 N LEU A 395 SHEET 1 AA2 2 TRP A 127 THR A 128 0 SHEET 2 AA2 2 MET A 217 ASP A 218 1 O MET A 217 N THR A 128 SHEET 1 AA3 2 TYR A 327 LEU A 328 0 SHEET 2 AA3 2 TRP A 431 SER A 432 1 O TRP A 431 N LEU A 328 SHEET 1 AA4 2 THR A 330 MET A 331 0 SHEET 2 AA4 2 ARG A 338 PHE A 339 -1 O ARG A 338 N MET A 331 SSBOND 1 CYS A 77 CYS A 237 1555 1555 2.04 SSBOND 2 CYS A 81 CYS A 235 1555 1555 2.04 SSBOND 3 CYS A 280 CYS A 504 1555 1555 2.03 SSBOND 4 CYS A 364 CYS A 485 1555 1555 2.03 LINK ND2 ASN A 132 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 234 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 282 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.44 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.45 LINK O6 MAN D 4 C1 MAN D 6 1555 1555 1.44 CISPEP 1 ALA A 293 PRO A 294 0 1.57 CRYST1 94.163 94.163 109.369 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010620 0.006131 0.000000 0.00000 SCALE2 0.000000 0.012263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009143 0.00000