data_8V1I # _entry.id 8V1I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8V1I pdb_00008v1i 10.2210/pdb8v1i/pdb WWPDB D_1000279349 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-07-10 2 'Structure model' 1 1 2024-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8V1I _pdbx_database_status.recvd_initial_deposition_date 2023-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email jinwei.zhang@nih.gov _pdbx_contact_author.name_first Jinwei _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2114-173X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Skeparnias, I.' 1 ? 'Zhang, J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis of MALAT1 RNA maturation and mascRNA biogenesis.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-024-01340-4 _citation.pdbx_database_id_PubMed 38956168 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Skeparnias, I.' 1 ? primary 'Bou-Nader, C.' 2 ? primary 'Anastasakis, D.G.' 3 ? primary 'Fan, L.' 4 ? primary 'Wang, Y.X.' 5 ? primary 'Hafner, M.' 6 ? primary 'Zhang, J.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man mascRNA 18493.770 2 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 4 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 10 ? ? ? ? 5 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GTP)AUGCUGGUGGUUGGCACUCCUGGUUUCCAGGACGGGGUUCAAAUCCCUGCGGCGUC' _entity_poly.pdbx_seq_one_letter_code_can GAUGCUGGUGGUUGGCACUCCUGGUUUCCAGGACGGGGUUCAAAUCCCUGCGGCGUC _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 1,2-ETHANEDIOL EDO 4 'CALCIUM ION' CA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 A n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 G n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 U n 1 14 G n 1 15 G n 1 16 C n 1 17 A n 1 18 C n 1 19 U n 1 20 C n 1 21 C n 1 22 U n 1 23 G n 1 24 G n 1 25 U n 1 26 U n 1 27 U n 1 28 C n 1 29 C n 1 30 A n 1 31 G n 1 32 G n 1 33 A n 1 34 C n 1 35 G n 1 36 G n 1 37 G n 1 38 G n 1 39 U n 1 40 U n 1 41 C n 1 42 A n 1 43 A n 1 44 A n 1 45 U n 1 46 C n 1 47 C n 1 48 C n 1 49 U n 1 50 G n 1 51 C n 1 52 G n 1 53 G n 1 54 C n 1 55 G n 1 56 U n 1 57 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 57 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP B . n A 1 2 A 2 2 2 A A B . n A 1 3 U 3 3 3 U U B . n A 1 4 G 4 4 4 G G B . n A 1 5 C 5 5 5 C C B . n A 1 6 U 6 6 6 U U B . n A 1 7 G 7 7 7 G G B . n A 1 8 G 8 8 8 G G B . n A 1 9 U 9 9 9 U U B . n A 1 10 G 10 10 10 G G B . n A 1 11 G 11 11 11 G G B . n A 1 12 U 12 12 12 U U B . n A 1 13 U 13 13 ? ? ? B . n A 1 14 G 14 14 14 G G B . n A 1 15 G 15 15 15 G G B . n A 1 16 C 16 16 16 C C B . n A 1 17 A 17 17 17 A A B . n A 1 18 C 18 18 18 C C B . n A 1 19 U 19 19 19 U U B . n A 1 20 C 20 20 20 C C B . n A 1 21 C 21 21 21 C C B . n A 1 22 U 22 22 22 U U B . n A 1 23 G 23 23 23 G G B . n A 1 24 G 24 24 24 G G B . n A 1 25 U 25 25 25 U U B . n A 1 26 U 26 26 26 U U B . n A 1 27 U 27 27 27 U U B . n A 1 28 C 28 28 28 C C B . n A 1 29 C 29 29 29 C C B . n A 1 30 A 30 30 30 A A B . n A 1 31 G 31 31 31 G G B . n A 1 32 G 32 32 32 G G B . n A 1 33 A 33 33 33 A A B . n A 1 34 C 34 34 34 C C B . n A 1 35 G 35 35 35 G G B . n A 1 36 G 36 36 36 G G B . n A 1 37 G 37 37 37 G G B . n A 1 38 G 38 38 38 G G B . n A 1 39 U 39 39 39 U U B . n A 1 40 U 40 40 40 U U B . n A 1 41 C 41 41 41 C C B . n A 1 42 A 42 42 42 A A B . n A 1 43 A 43 43 43 A A B . n A 1 44 A 44 44 44 A A B . n A 1 45 U 45 45 45 U U B . n A 1 46 C 46 46 46 C C B . n A 1 47 C 47 47 47 C C B . n A 1 48 C 48 48 48 C C B . n A 1 49 U 49 49 49 U U B . n A 1 50 G 50 50 50 G G B . n A 1 51 C 51 51 51 C C B . n A 1 52 G 52 52 52 G G B . n A 1 53 G 53 53 53 G G B . n A 1 54 C 54 54 54 C C B . n A 1 55 G 55 55 55 G G B . n A 1 56 U 56 56 56 U U B . n A 1 57 C 57 57 57 C C B . n B 1 1 GTP 1 1 1 GTP GTP A . n B 1 2 A 2 2 2 A A A . n B 1 3 U 3 3 3 U U A . n B 1 4 G 4 4 4 G G A . n B 1 5 C 5 5 5 C C A . n B 1 6 U 6 6 6 U U A . n B 1 7 G 7 7 7 G G A . n B 1 8 G 8 8 8 G G A . n B 1 9 U 9 9 9 U U A . n B 1 10 G 10 10 10 G G A . n B 1 11 G 11 11 11 G G A . n B 1 12 U 12 12 12 U U A . n B 1 13 U 13 13 13 U U A . n B 1 14 G 14 14 14 G G A . n B 1 15 G 15 15 15 G G A . n B 1 16 C 16 16 16 C C A . n B 1 17 A 17 17 17 A A A . n B 1 18 C 18 18 18 C C A . n B 1 19 U 19 19 19 U U A . n B 1 20 C 20 20 20 C C A . n B 1 21 C 21 21 21 C C A . n B 1 22 U 22 22 22 U U A . n B 1 23 G 23 23 23 G G A . n B 1 24 G 24 24 24 G G A . n B 1 25 U 25 25 25 U U A . n B 1 26 U 26 26 26 U U A . n B 1 27 U 27 27 27 U U A . n B 1 28 C 28 28 28 C C A . n B 1 29 C 29 29 29 C C A . n B 1 30 A 30 30 30 A A A . n B 1 31 G 31 31 31 G G A . n B 1 32 G 32 32 32 G G A . n B 1 33 A 33 33 33 A A A . n B 1 34 C 34 34 34 C C A . n B 1 35 G 35 35 35 G G A . n B 1 36 G 36 36 36 G G A . n B 1 37 G 37 37 37 G G A . n B 1 38 G 38 38 38 G G A . n B 1 39 U 39 39 39 U U A . n B 1 40 U 40 40 40 U U A . n B 1 41 C 41 41 41 C C A . n B 1 42 A 42 42 42 A A A . n B 1 43 A 43 43 43 A A A . n B 1 44 A 44 44 44 A A A . n B 1 45 U 45 45 45 U U A . n B 1 46 C 46 46 46 C C A . n B 1 47 C 47 47 47 C C A . n B 1 48 C 48 48 48 C C A . n B 1 49 U 49 49 49 U U A . n B 1 50 G 50 50 50 G G A . n B 1 51 C 51 51 51 C C A . n B 1 52 G 52 52 52 G G A . n B 1 53 G 53 53 53 G G A . n B 1 54 C 54 54 54 C C A . n B 1 55 G 55 55 55 G G A . n B 1 56 U 56 56 56 U U A . n B 1 57 C 57 57 57 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT 1 101 58 ACT ACT B . D 2 ACT 1 102 59 ACT ACT B . E 3 EDO 1 103 60 EDO EDO B . F 4 CA 1 104 61 CA CA B . G 4 CA 1 105 62 CA CA B . H 4 CA 1 106 63 CA CA B . I 4 CA 1 107 64 CA CA B . J 2 ACT 1 101 58 ACT ACT A . K 2 ACT 1 102 59 ACT ACT A . L 4 CA 1 103 60 CA CA A . M 4 CA 1 104 61 CA CA A . N 4 CA 1 105 62 CA CA A . O 4 CA 1 106 63 CA CA A . P 4 CA 1 107 64 CA CA A . Q 4 CA 1 108 65 CA CA A . R 5 HOH 1 201 71 HOH HOH B . R 5 HOH 2 202 72 HOH HOH B . R 5 HOH 3 203 65 HOH HOH B . R 5 HOH 4 204 69 HOH HOH B . R 5 HOH 5 205 66 HOH HOH B . R 5 HOH 6 206 68 HOH HOH B . R 5 HOH 7 207 77 HOH HOH B . R 5 HOH 8 208 73 HOH HOH B . R 5 HOH 9 209 78 HOH HOH B . R 5 HOH 10 210 74 HOH HOH B . R 5 HOH 11 211 70 HOH HOH B . R 5 HOH 12 212 79 HOH HOH B . R 5 HOH 13 213 75 HOH HOH B . R 5 HOH 14 214 67 HOH HOH B . R 5 HOH 15 215 76 HOH HOH B . R 5 HOH 16 216 80 HOH HOH B . S 5 HOH 1 201 75 HOH HOH A . S 5 HOH 2 202 66 HOH HOH A . S 5 HOH 3 203 72 HOH HOH A . S 5 HOH 4 204 71 HOH HOH A . S 5 HOH 5 205 68 HOH HOH A . S 5 HOH 6 206 74 HOH HOH A . S 5 HOH 7 207 73 HOH HOH A . S 5 HOH 8 208 70 HOH HOH A . S 5 HOH 9 209 69 HOH HOH A . S 5 HOH 10 210 67 HOH HOH A . S 5 HOH 11 211 76 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B G 7 ? "O2'" ? A G 7 "O2'" 2 1 Y 1 A U 13 ? N1 ? B U 13 N1 3 1 Y 1 A U 13 ? C2 ? B U 13 C2 4 1 Y 1 A U 13 ? O2 ? B U 13 O2 5 1 Y 1 A U 13 ? N3 ? B U 13 N3 6 1 Y 1 A U 13 ? C4 ? B U 13 C4 7 1 Y 1 A U 13 ? O4 ? B U 13 O4 8 1 Y 1 A U 13 ? C5 ? B U 13 C5 9 1 Y 1 A U 13 ? C6 ? B U 13 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.2_4158: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8V1I _cell.details ? _cell.formula_units_Z ? _cell.length_a 137.063 _cell.length_a_esd ? _cell.length_b 137.063 _cell.length_b_esd ? _cell.length_c 135.805 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 36 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8V1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8V1I _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M calcium chloride dihydrate, 0.1 M sodium acetate trihydrate and 20% (v/v) 2-propanol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-07-29 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8V1I _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 31.99 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21925 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.77 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 34 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.33 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2172 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.811 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8V1I _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.30 _refine.ls_d_res_low 31.99 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21898 _refine.ls_number_reflns_R_free 1067 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.81 _refine.ls_percent_reflns_R_free 4.87 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2154 _refine.ls_R_factor_R_free 0.2294 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2147 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.97 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.46 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.47 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 31.99 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 2474 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2417 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 2706 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.079 ? 4204 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.209 ? 1367 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.042 ? 565 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 118 ? f_plane_restr ? ? # _struct.entry_id 8V1I _struct.title 'Crystal structure of human mascRNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8V1I _struct_keywords.text 'non-coding RNAs, cancer, RNA, mascRNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 2 ? K N N 2 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 5 ? S N N 5 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NR_002819.4 _struct_ref.pdbx_db_accession 1108618392 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GAUGCUGGUGGUUGGCACUCCUGGUUUCCAGGACGGGGUUCAAAUCCCUGCGGCGUC _struct_ref.pdbx_align_begin 8380 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8V1I B 1 ? 57 ? 1108618392 8380 ? 8436 ? 1 57 2 1 8V1I A 1 ? 57 ? 1108618392 8380 ? 8436 ? 1 57 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,R 2 1 B,J,K,L,M,N,O,P,Q,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A A 2 P ? ? B GTP 1 B A 2 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B A 2 P ? ? A GTP 1 A A 2 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? A GTP 1 O2A ? ? ? 1_555 I CA . CA ? ? B GTP 1 B CA 107 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc2 metalc ? ? A G 23 OP1 ? ? ? 1_555 O CA . CA ? ? B G 23 A CA 106 4_555 ? ? ? ? ? ? ? 2.639 ? ? metalc3 metalc ? ? A U 25 O4 ? ? ? 1_555 G CA . CA ? ? B U 25 B CA 105 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc4 metalc ? ? A U 26 O2 ? ? ? 1_555 G CA . CA ? ? B U 26 B CA 105 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc5 metalc ? ? A G 32 OP2 ? ? ? 1_555 H CA . CA ? ? B G 32 B CA 106 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc6 metalc ? ? G CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 105 B HOH 203 1_555 ? ? ? ? ? ? ? 2.914 ? ? metalc7 metalc ? ? G CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 105 B HOH 206 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc8 metalc ? ? G CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 105 B HOH 214 1_555 ? ? ? ? ? ? ? 2.612 ? ? metalc9 metalc ? ? G CA . CA ? ? ? 4_555 B G 24 O6 ? ? B CA 105 A G 24 1_555 ? ? ? ? ? ? ? 2.590 ? ? metalc10 metalc ? ? H CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 106 B HOH 207 1_555 ? ? ? ? ? ? ? 2.621 ? ? metalc11 metalc ? ? H CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 106 B HOH 208 1_555 ? ? ? ? ? ? ? 2.988 ? ? metalc12 metalc ? ? H CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 106 B HOH 209 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc13 metalc ? ? H CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 106 B HOH 210 1_555 ? ? ? ? ? ? ? 2.812 ? ? metalc14 metalc ? ? H CA . CA ? ? ? 1_555 R HOH . O ? ? B CA 106 B HOH 215 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc15 metalc ? ? I CA . CA ? ? ? 18_444 B C 57 OP2 ? ? B CA 107 A C 57 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc16 metalc ? ? R HOH . O ? ? ? 4_555 O CA . CA ? ? B HOH 202 A CA 106 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc17 metalc ? ? R HOH . O ? ? ? 4_555 O CA . CA ? ? B HOH 211 A CA 106 1_555 ? ? ? ? ? ? ? 2.417 ? ? metalc18 metalc ? ? B G 23 OP1 ? ? ? 1_555 O CA . CA ? ? A G 23 A CA 106 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc19 metalc ? ? B C 28 OP1 ? ? ? 1_555 Q CA . CA ? ? A C 28 A CA 108 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc20 metalc ? ? B G 32 OP2 ? ? ? 1_555 P CA . CA ? ? A G 32 A CA 107 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc21 metalc ? ? B A 42 OP1 ? ? ? 1_555 N CA . CA ? ? A A 42 A CA 105 1_555 ? ? ? ? ? ? ? 2.504 ? ? metalc22 metalc ? ? O CA . CA ? ? ? 1_555 S HOH . O ? ? A CA 106 A HOH 204 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc23 metalc ? ? O CA . CA ? ? ? 1_555 S HOH . O ? ? A CA 106 A HOH 210 1_555 ? ? ? ? ? ? ? 2.492 ? ? metalc24 metalc ? ? P CA . CA ? ? ? 1_555 S HOH . O ? ? A CA 107 A HOH 203 1_555 ? ? ? ? ? ? ? 2.534 ? ? metalc25 metalc ? ? P CA . CA ? ? ? 1_555 S HOH . O ? ? A CA 107 A HOH 206 1_555 ? ? ? ? ? ? ? 2.572 ? ? metalc26 metalc ? ? P CA . CA ? ? ? 1_555 S HOH . O ? ? A CA 107 A HOH 207 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc27 metalc ? ? P CA . CA ? ? ? 1_555 S HOH . O ? ? A CA 107 A HOH 208 1_555 ? ? ? ? ? ? ? 2.900 ? ? metalc28 metalc ? ? P CA . CA ? ? ? 1_555 S HOH . O ? ? A CA 107 A HOH 209 1_555 ? ? ? ? ? ? ? 2.511 ? ? hydrog1 hydrog ? ? B GTP 1 N1 ? ? ? 1_555 B C 57 N3 ? ? A GTP 1 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B GTP 1 N2 ? ? ? 1_555 B C 57 O2 ? ? A GTP 1 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B GTP 1 O6 ? ? ? 1_555 B C 57 N4 ? ? A GTP 1 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B A 2 N1 ? ? ? 1_555 B U 56 N3 ? ? A A 2 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B A 2 N6 ? ? ? 1_555 B U 56 O4 ? ? A A 2 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B U 3 N3 ? ? ? 1_555 B G 55 O6 ? ? A U 3 A G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? B U 3 O2 ? ? ? 1_555 B G 55 N1 ? ? A U 3 A G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 54 N3 ? ? A G 4 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 54 O2 ? ? A G 4 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 54 N4 ? ? A G 4 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 53 N1 ? ? A C 5 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 53 O6 ? ? A C 5 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 53 N2 ? ? A C 5 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B U 6 N3 ? ? ? 1_555 B G 52 O6 ? ? A U 6 A G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? B U 6 O2 ? ? ? 1_555 B G 52 N1 ? ? A U 6 A G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 51 N3 ? ? A G 7 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 51 O2 ? ? A G 7 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 51 N4 ? ? A G 7 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 18 N3 ? ? A G 8 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 18 O2 ? ? A G 8 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 18 N4 ? ? A G 8 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 8 O6 ? ? ? 1_555 B A 44 N6 ? ? A G 8 A A 44 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog23 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 17 N1 ? ? A U 9 A A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 17 N6 ? ? A U 9 A A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 16 N3 ? ? A G 10 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 16 O2 ? ? A G 10 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 16 N4 ? ? A G 10 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B G 14 N1 ? ? ? 1_555 B U 40 O2 ? ? A G 14 A U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog29 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 41 N3 ? ? A G 15 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 41 O2 ? ? A G 15 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 15 O6 ? ? ? 1_555 B C 41 N4 ? ? A G 15 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 16 N4 ? ? ? 1_555 B U 45 O4 ? ? A C 16 A U 45 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog33 hydrog ? ? B U 19 N3 ? ? ? 1_555 B A 33 N1 ? ? A U 19 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B U 19 O4 ? ? ? 1_555 B A 33 N6 ? ? A U 19 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 32 N1 ? ? A C 20 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 32 O6 ? ? A C 20 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 32 N2 ? ? A C 20 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 21 N3 ? ? ? 1_555 B G 31 N1 ? ? A C 21 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 21 N4 ? ? ? 1_555 B G 31 O6 ? ? A C 21 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 21 O2 ? ? ? 1_555 B G 31 N2 ? ? A C 21 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 30 N1 ? ? A U 22 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B U 22 O4 ? ? ? 1_555 B A 30 N6 ? ? A U 22 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 34 N3 ? ? ? 1_555 B G 50 N1 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 34 N4 ? ? ? 1_555 B G 50 O6 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 34 O2 ? ? ? 1_555 B G 50 N2 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 35 N1 ? ? ? 1_555 B U 49 O2 ? ? A G 35 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? B G 35 O6 ? ? ? 1_555 B U 49 N3 ? ? A G 35 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? B G 36 N1 ? ? ? 1_555 B C 48 N3 ? ? A G 36 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 36 N2 ? ? ? 1_555 B C 48 O2 ? ? A G 36 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 36 O6 ? ? ? 1_555 B C 48 N4 ? ? A G 36 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 37 N1 ? ? ? 1_555 B C 47 N3 ? ? A G 37 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 37 N2 ? ? ? 1_555 B C 47 O2 ? ? A G 37 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 37 O6 ? ? ? 1_555 B C 47 N4 ? ? A G 37 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 38 N1 ? ? ? 1_555 B C 46 N3 ? ? A G 38 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 38 N2 ? ? ? 1_555 B C 46 O2 ? ? A G 38 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 38 O6 ? ? ? 1_555 B C 46 N4 ? ? A G 38 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B U 39 N3 ? ? ? 1_555 B A 43 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog58 hydrog ? ? B U 39 O2 ? ? ? 1_555 B A 43 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog59 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 57 N3 ? ? B GTP 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 57 O2 ? ? B GTP 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 57 N4 ? ? B GTP 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 56 N3 ? ? B A 2 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 56 O4 ? ? B A 2 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 55 O6 ? ? B U 3 B G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 55 N1 ? ? B U 3 B G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog66 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 54 N3 ? ? B G 4 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 54 O2 ? ? B G 4 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 54 N4 ? ? B G 4 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 53 N1 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 53 O6 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 53 N2 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 52 O6 ? ? B U 6 B G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 52 N1 ? ? B U 6 B G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 51 N3 ? ? B G 7 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 51 O2 ? ? B G 7 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 51 N4 ? ? B G 7 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 18 N3 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 18 O2 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 18 N4 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 8 O6 ? ? ? 1_555 A A 44 N6 ? ? B G 8 B A 44 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog81 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 17 N1 ? ? B U 9 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 17 N6 ? ? B U 9 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 16 N3 ? ? B G 10 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 16 O2 ? ? B G 10 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 16 N4 ? ? B G 10 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 14 N1 ? ? ? 1_555 A U 40 O2 ? ? B G 14 B U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog87 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 41 N3 ? ? B G 15 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 41 O2 ? ? B G 15 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 41 N4 ? ? B G 15 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 16 N4 ? ? ? 1_555 A U 45 O4 ? ? B C 16 B U 45 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog91 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 33 N1 ? ? B U 19 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 33 N6 ? ? B U 19 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 32 N1 ? ? B C 20 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 32 O6 ? ? B C 20 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 32 N2 ? ? B C 20 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 21 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 21 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 21 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 30 N1 ? ? B U 22 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 30 N6 ? ? B U 22 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 50 N1 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 50 O6 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 50 N2 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 35 N1 ? ? ? 1_555 A U 49 O2 ? ? B G 35 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog105 hydrog ? ? A G 35 O6 ? ? ? 1_555 A U 49 N3 ? ? B G 35 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog106 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 48 N3 ? ? B G 36 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 48 O2 ? ? B G 36 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 48 N4 ? ? B G 36 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 47 N3 ? ? B G 37 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 47 O2 ? ? B G 37 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 47 N4 ? ? B G 37 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 46 N3 ? ? B G 38 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 46 O2 ? ? B G 38 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 46 N4 ? ? B G 38 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A U 39 N3 ? ? ? 1_555 A A 43 N7 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog116 hydrog ? ? A U 39 O2 ? ? ? 1_555 A A 43 N6 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2A ? A GTP 1 ? B GTP 1 ? 1_555 CA ? I CA . ? B CA 107 ? 1_555 OP2 ? B C 57 ? A C 57 ? 1_555 66.0 ? 2 OP1 ? A G 23 ? B G 23 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 O ? R HOH . ? B HOH 202 ? 4_555 108.1 ? 3 OP1 ? A G 23 ? B G 23 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 O ? R HOH . ? B HOH 211 ? 4_555 110.1 ? 4 O ? R HOH . ? B HOH 202 ? 4_555 CA ? O CA . ? A CA 106 ? 4_555 O ? R HOH . ? B HOH 211 ? 4_555 3.0 ? 5 OP1 ? A G 23 ? B G 23 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 OP1 ? B G 23 ? A G 23 ? 1_555 102.0 ? 6 O ? R HOH . ? B HOH 202 ? 4_555 CA ? O CA . ? A CA 106 ? 4_555 OP1 ? B G 23 ? A G 23 ? 1_555 7.4 ? 7 O ? R HOH . ? B HOH 211 ? 4_555 CA ? O CA . ? A CA 106 ? 4_555 OP1 ? B G 23 ? A G 23 ? 1_555 8.3 ? 8 OP1 ? A G 23 ? B G 23 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 204 ? 1_555 105.3 ? 9 O ? R HOH . ? B HOH 202 ? 4_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 204 ? 1_555 7.5 ? 10 O ? R HOH . ? B HOH 211 ? 4_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 204 ? 1_555 6.6 ? 11 OP1 ? B G 23 ? A G 23 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 204 ? 1_555 4.4 ? 12 OP1 ? A G 23 ? B G 23 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 210 ? 1_555 108.8 ? 13 O ? R HOH . ? B HOH 202 ? 4_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 210 ? 1_555 7.3 ? 14 O ? R HOH . ? B HOH 211 ? 4_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 210 ? 1_555 5.1 ? 15 OP1 ? B G 23 ? A G 23 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 210 ? 1_555 7.5 ? 16 O ? S HOH . ? A HOH 204 ? 1_555 CA ? O CA . ? A CA 106 ? 4_555 O ? S HOH . ? A HOH 210 ? 1_555 3.5 ? 17 O4 ? A U 25 ? B U 25 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O2 ? A U 26 ? B U 26 ? 1_555 81.6 ? 18 O4 ? A U 25 ? B U 25 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 203 ? 1_555 63.7 ? 19 O2 ? A U 26 ? B U 26 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 203 ? 1_555 68.6 ? 20 O4 ? A U 25 ? B U 25 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 206 ? 1_555 74.1 ? 21 O2 ? A U 26 ? B U 26 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 206 ? 1_555 119.1 ? 22 O ? R HOH . ? B HOH 203 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 206 ? 1_555 135.7 ? 23 O4 ? A U 25 ? B U 25 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 214 ? 1_555 116.2 ? 24 O2 ? A U 26 ? B U 26 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 214 ? 1_555 72.1 ? 25 O ? R HOH . ? B HOH 203 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 214 ? 1_555 140.3 ? 26 O ? R HOH . ? B HOH 206 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? R HOH . ? B HOH 214 ? 1_555 70.6 ? 27 O4 ? A U 25 ? B U 25 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O6 ? B G 24 ? A G 24 ? 1_555 58.1 ? 28 O2 ? A U 26 ? B U 26 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O6 ? B G 24 ? A G 24 ? 1_555 106.3 ? 29 O ? R HOH . ? B HOH 203 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O6 ? B G 24 ? A G 24 ? 1_555 39.4 ? 30 O ? R HOH . ? B HOH 206 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O6 ? B G 24 ? A G 24 ? 1_555 106.1 ? 31 O ? R HOH . ? B HOH 214 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O6 ? B G 24 ? A G 24 ? 1_555 174.3 ? 32 OP2 ? A G 32 ? B G 32 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 207 ? 1_555 109.3 ? 33 OP2 ? A G 32 ? B G 32 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 208 ? 1_555 79.6 ? 34 O ? R HOH . ? B HOH 207 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 208 ? 1_555 86.3 ? 35 OP2 ? A G 32 ? B G 32 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 209 ? 1_555 70.5 ? 36 O ? R HOH . ? B HOH 207 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 209 ? 1_555 136.0 ? 37 O ? R HOH . ? B HOH 208 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 209 ? 1_555 49.8 ? 38 OP2 ? A G 32 ? B G 32 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 210 ? 1_555 80.6 ? 39 O ? R HOH . ? B HOH 207 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 210 ? 1_555 80.5 ? 40 O ? R HOH . ? B HOH 208 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 210 ? 1_555 151.1 ? 41 O ? R HOH . ? B HOH 209 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 210 ? 1_555 138.9 ? 42 OP2 ? A G 32 ? B G 32 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 84.3 ? 43 O ? R HOH . ? B HOH 207 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 139.5 ? 44 O ? R HOH . ? B HOH 208 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 134.1 ? 45 O ? R HOH . ? B HOH 209 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 84.3 ? 46 O ? R HOH . ? B HOH 210 ? 1_555 CA ? H CA . ? B CA 106 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 63.9 ? 47 OP2 ? B G 32 ? A G 32 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 203 ? 1_555 111.2 ? 48 OP2 ? B G 32 ? A G 32 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 206 ? 1_555 85.9 ? 49 O ? S HOH . ? A HOH 203 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 206 ? 1_555 77.4 ? 50 OP2 ? B G 32 ? A G 32 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 207 ? 1_555 164.1 ? 51 O ? S HOH . ? A HOH 203 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 207 ? 1_555 84.7 ? 52 O ? S HOH . ? A HOH 206 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 207 ? 1_555 98.9 ? 53 OP2 ? B G 32 ? A G 32 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 208 ? 1_555 86.1 ? 54 O ? S HOH . ? A HOH 203 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 208 ? 1_555 88.6 ? 55 O ? S HOH . ? A HOH 206 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 208 ? 1_555 160.1 ? 56 O ? S HOH . ? A HOH 207 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 208 ? 1_555 93.7 ? 57 OP2 ? B G 32 ? A G 32 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 209 ? 1_555 87.7 ? 58 O ? S HOH . ? A HOH 203 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 209 ? 1_555 135.5 ? 59 O ? S HOH . ? A HOH 206 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 209 ? 1_555 145.9 ? 60 O ? S HOH . ? A HOH 207 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 209 ? 1_555 79.8 ? 61 O ? S HOH . ? A HOH 208 ? 1_555 CA ? P CA . ? A CA 107 ? 1_555 O ? S HOH . ? A HOH 209 ? 1_555 51.6 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B G 24 ? ? P B G 24 ? ? OP2 B G 24 ? ? 99.22 105.70 -6.48 0.90 N 2 1 N1 B U 27 ? ? C2 B U 27 ? ? O2 B U 27 ? ? 127.70 122.80 4.90 0.70 N 3 1 N3 B U 27 ? ? C2 B U 27 ? ? O2 B U 27 ? ? 117.05 122.20 -5.15 0.70 N 4 1 C5 A G 24 ? ? C6 A G 24 ? ? O6 A G 24 ? ? 132.48 128.60 3.88 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 B GTP 1 ? G 'modified residue' 2 B GTP 1 A GTP 1 ? G 'modified residue' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.3797 _pdbx_refine_tls.origin_y -33.4721 _pdbx_refine_tls.origin_z -9.7843 _pdbx_refine_tls.T[1][1] 0.7919 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0281 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.1249 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.6847 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.1108 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.8778 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.7798 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.2244 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.2624 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.4566 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.1171 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.3895 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.1119 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.1743 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.3185 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0660 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0931 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.1543 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.2793 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.2302 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.2148 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_entry_details.entry_id 8V1I _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 13 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 CA CA CA N N 80 EDO C1 C N N 81 EDO O1 O N N 82 EDO C2 C N N 83 EDO O2 O N N 84 EDO H11 H N N 85 EDO H12 H N N 86 EDO HO1 H N N 87 EDO H21 H N N 88 EDO H22 H N N 89 EDO HO2 H N N 90 G OP3 O N N 91 G P P N N 92 G OP1 O N N 93 G OP2 O N N 94 G "O5'" O N N 95 G "C5'" C N N 96 G "C4'" C N R 97 G "O4'" O N N 98 G "C3'" C N S 99 G "O3'" O N N 100 G "C2'" C N R 101 G "O2'" O N N 102 G "C1'" C N R 103 G N9 N Y N 104 G C8 C Y N 105 G N7 N Y N 106 G C5 C Y N 107 G C6 C N N 108 G O6 O N N 109 G N1 N N N 110 G C2 C N N 111 G N2 N N N 112 G N3 N N N 113 G C4 C Y N 114 G HOP3 H N N 115 G HOP2 H N N 116 G "H5'" H N N 117 G "H5''" H N N 118 G "H4'" H N N 119 G "H3'" H N N 120 G "HO3'" H N N 121 G "H2'" H N N 122 G "HO2'" H N N 123 G "H1'" H N N 124 G H8 H N N 125 G H1 H N N 126 G H21 H N N 127 G H22 H N N 128 GTP PG P N N 129 GTP O1G O N N 130 GTP O2G O N N 131 GTP O3G O N N 132 GTP O3B O N N 133 GTP PB P N N 134 GTP O1B O N N 135 GTP O2B O N N 136 GTP O3A O N N 137 GTP PA P N N 138 GTP O1A O N N 139 GTP O2A O N N 140 GTP "O5'" O N N 141 GTP "C5'" C N N 142 GTP "C4'" C N R 143 GTP "O4'" O N N 144 GTP "C3'" C N S 145 GTP "O3'" O N N 146 GTP "C2'" C N R 147 GTP "O2'" O N N 148 GTP "C1'" C N R 149 GTP N9 N Y N 150 GTP C8 C Y N 151 GTP N7 N Y N 152 GTP C5 C Y N 153 GTP C6 C N N 154 GTP O6 O N N 155 GTP N1 N N N 156 GTP C2 C N N 157 GTP N2 N N N 158 GTP N3 N N N 159 GTP C4 C Y N 160 GTP HOG2 H N N 161 GTP HOG3 H N N 162 GTP HOB2 H N N 163 GTP HOA2 H N N 164 GTP "H5'" H N N 165 GTP "H5''" H N N 166 GTP "H4'" H N N 167 GTP "H3'" H N N 168 GTP "HO3'" H N N 169 GTP "H2'" H N N 170 GTP "HO2'" H N N 171 GTP "H1'" H N N 172 GTP H8 H N N 173 GTP HN1 H N N 174 GTP HN21 H N N 175 GTP HN22 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 U OP3 O N N 180 U P P N N 181 U OP1 O N N 182 U OP2 O N N 183 U "O5'" O N N 184 U "C5'" C N N 185 U "C4'" C N R 186 U "O4'" O N N 187 U "C3'" C N S 188 U "O3'" O N N 189 U "C2'" C N R 190 U "O2'" O N N 191 U "C1'" C N R 192 U N1 N N N 193 U C2 C N N 194 U O2 O N N 195 U N3 N N N 196 U C4 C N N 197 U O4 O N N 198 U C5 C N N 199 U C6 C N N 200 U HOP3 H N N 201 U HOP2 H N N 202 U "H5'" H N N 203 U "H5''" H N N 204 U "H4'" H N N 205 U "H3'" H N N 206 U "HO3'" H N N 207 U "H2'" H N N 208 U "HO2'" H N N 209 U "H1'" H N N 210 U H3 H N N 211 U H5 H N N 212 U H6 H N N 213 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 EDO C1 O1 sing N N 82 EDO C1 C2 sing N N 83 EDO C1 H11 sing N N 84 EDO C1 H12 sing N N 85 EDO O1 HO1 sing N N 86 EDO C2 O2 sing N N 87 EDO C2 H21 sing N N 88 EDO C2 H22 sing N N 89 EDO O2 HO2 sing N N 90 G OP3 P sing N N 91 G OP3 HOP3 sing N N 92 G P OP1 doub N N 93 G P OP2 sing N N 94 G P "O5'" sing N N 95 G OP2 HOP2 sing N N 96 G "O5'" "C5'" sing N N 97 G "C5'" "C4'" sing N N 98 G "C5'" "H5'" sing N N 99 G "C5'" "H5''" sing N N 100 G "C4'" "O4'" sing N N 101 G "C4'" "C3'" sing N N 102 G "C4'" "H4'" sing N N 103 G "O4'" "C1'" sing N N 104 G "C3'" "O3'" sing N N 105 G "C3'" "C2'" sing N N 106 G "C3'" "H3'" sing N N 107 G "O3'" "HO3'" sing N N 108 G "C2'" "O2'" sing N N 109 G "C2'" "C1'" sing N N 110 G "C2'" "H2'" sing N N 111 G "O2'" "HO2'" sing N N 112 G "C1'" N9 sing N N 113 G "C1'" "H1'" sing N N 114 G N9 C8 sing Y N 115 G N9 C4 sing Y N 116 G C8 N7 doub Y N 117 G C8 H8 sing N N 118 G N7 C5 sing Y N 119 G C5 C6 sing N N 120 G C5 C4 doub Y N 121 G C6 O6 doub N N 122 G C6 N1 sing N N 123 G N1 C2 sing N N 124 G N1 H1 sing N N 125 G C2 N2 sing N N 126 G C2 N3 doub N N 127 G N2 H21 sing N N 128 G N2 H22 sing N N 129 G N3 C4 sing N N 130 GTP PG O1G doub N N 131 GTP PG O2G sing N N 132 GTP PG O3G sing N N 133 GTP PG O3B sing N N 134 GTP O2G HOG2 sing N N 135 GTP O3G HOG3 sing N N 136 GTP O3B PB sing N N 137 GTP PB O1B doub N N 138 GTP PB O2B sing N N 139 GTP PB O3A sing N N 140 GTP O2B HOB2 sing N N 141 GTP O3A PA sing N N 142 GTP PA O1A doub N N 143 GTP PA O2A sing N N 144 GTP PA "O5'" sing N N 145 GTP O2A HOA2 sing N N 146 GTP "O5'" "C5'" sing N N 147 GTP "C5'" "C4'" sing N N 148 GTP "C5'" "H5'" sing N N 149 GTP "C5'" "H5''" sing N N 150 GTP "C4'" "O4'" sing N N 151 GTP "C4'" "C3'" sing N N 152 GTP "C4'" "H4'" sing N N 153 GTP "O4'" "C1'" sing N N 154 GTP "C3'" "O3'" sing N N 155 GTP "C3'" "C2'" sing N N 156 GTP "C3'" "H3'" sing N N 157 GTP "O3'" "HO3'" sing N N 158 GTP "C2'" "O2'" sing N N 159 GTP "C2'" "C1'" sing N N 160 GTP "C2'" "H2'" sing N N 161 GTP "O2'" "HO2'" sing N N 162 GTP "C1'" N9 sing N N 163 GTP "C1'" "H1'" sing N N 164 GTP N9 C8 sing Y N 165 GTP N9 C4 sing Y N 166 GTP C8 N7 doub Y N 167 GTP C8 H8 sing N N 168 GTP N7 C5 sing Y N 169 GTP C5 C6 sing N N 170 GTP C5 C4 doub Y N 171 GTP C6 O6 doub N N 172 GTP C6 N1 sing N N 173 GTP N1 C2 sing N N 174 GTP N1 HN1 sing N N 175 GTP C2 N2 sing N N 176 GTP C2 N3 doub N N 177 GTP N2 HN21 sing N N 178 GTP N2 HN22 sing N N 179 GTP N3 C4 sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 U OP3 P sing N N 183 U OP3 HOP3 sing N N 184 U P OP1 doub N N 185 U P OP2 sing N N 186 U P "O5'" sing N N 187 U OP2 HOP2 sing N N 188 U "O5'" "C5'" sing N N 189 U "C5'" "C4'" sing N N 190 U "C5'" "H5'" sing N N 191 U "C5'" "H5''" sing N N 192 U "C4'" "O4'" sing N N 193 U "C4'" "C3'" sing N N 194 U "C4'" "H4'" sing N N 195 U "O4'" "C1'" sing N N 196 U "C3'" "O3'" sing N N 197 U "C3'" "C2'" sing N N 198 U "C3'" "H3'" sing N N 199 U "O3'" "HO3'" sing N N 200 U "C2'" "O2'" sing N N 201 U "C2'" "C1'" sing N N 202 U "C2'" "H2'" sing N N 203 U "O2'" "HO2'" sing N N 204 U "C1'" N1 sing N N 205 U "C1'" "H1'" sing N N 206 U N1 C2 sing N N 207 U N1 C6 sing N N 208 U C2 O2 doub N N 209 U C2 N3 sing N N 210 U N3 C4 sing N N 211 U N3 H3 sing N N 212 U C4 O4 doub N N 213 U C4 C5 sing N N 214 U C5 C6 doub N N 215 U C5 H5 sing N N 216 U C6 H6 sing N N 217 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8V1I 'double helix' 8V1I 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A C 57 1_555 -0.737 -0.064 -0.021 -1.913 -12.942 -3.525 1 B_GTP1:C57_B B 1 ? B 57 ? 19 1 1 A A 2 1_555 A U 56 1_555 0.665 0.046 0.072 0.789 -19.261 0.437 2 B_A2:U56_B B 2 ? B 56 ? 20 1 1 A U 3 1_555 A G 55 1_555 2.362 -0.490 0.175 4.036 -17.592 4.007 3 B_U3:G55_B B 3 ? B 55 ? 28 1 1 A G 4 1_555 A C 54 1_555 -0.348 -0.168 0.053 1.749 -16.355 -0.229 4 B_G4:C54_B B 4 ? B 54 ? 19 1 1 A C 5 1_555 A G 53 1_555 -0.133 -0.253 0.348 -0.087 -15.855 -0.179 5 B_C5:G53_B B 5 ? B 53 ? 19 1 1 A U 6 1_555 A G 52 1_555 2.349 -0.355 0.304 -5.157 -18.219 3.709 6 B_U6:G52_B B 6 ? B 52 ? 28 1 1 A G 7 1_555 A C 51 1_555 -0.704 -0.114 -0.081 7.108 -7.816 -6.866 7 B_G7:C51_B B 7 ? B 51 ? 19 1 1 A C 34 1_555 A G 50 1_555 0.269 -0.330 0.290 0.205 -14.617 1.577 8 B_C34:G50_B B 34 ? B 50 ? 19 1 1 A G 35 1_555 A U 49 1_555 -2.737 -0.614 -0.069 -4.540 -9.024 1.340 9 B_G35:U49_B B 35 ? B 49 ? 28 1 1 A G 36 1_555 A C 48 1_555 -0.137 -0.303 0.007 -0.617 -9.914 -0.179 10 B_G36:C48_B B 36 ? B 48 ? 19 1 1 A G 37 1_555 A C 47 1_555 -0.124 -0.068 -0.286 -9.557 -17.120 -1.828 11 B_G37:C47_B B 37 ? B 47 ? 19 1 1 A G 38 1_555 A C 46 1_555 -0.047 -0.073 -0.230 -20.067 -16.286 -2.678 12 B_G38:C46_B B 38 ? B 46 ? 19 1 1 A U 39 1_555 A A 43 1_555 4.399 -2.015 0.519 -2.767 15.425 -98.545 13 B_U39:A43_B B 39 ? B 43 ? 24 4 1 A U 40 1_555 A G 14 1_555 0.623 -5.292 0.271 27.289 15.797 -98.754 14 B_U40:G14_B B 40 ? B 14 ? ? 2 1 A C 16 1_555 A G 10 1_555 -0.428 0.014 -0.011 3.482 -7.284 5.328 15 B_C16:G10_B B 16 ? B 10 ? 19 1 1 A A 17 1_555 A U 9 1_555 0.002 -0.163 0.183 10.801 -6.795 2.789 16 B_A17:U9_B B 17 ? B 9 ? 20 1 1 A C 18 1_555 A G 8 1_555 0.216 -0.070 -0.302 13.592 -10.439 6.437 17 B_C18:G8_B B 18 ? B 8 ? 19 1 1 A U 19 1_555 A A 33 1_555 -0.277 0.004 0.307 5.488 -16.773 -1.296 18 B_U19:A33_B B 19 ? B 33 ? 20 1 1 A C 20 1_555 A G 32 1_555 0.392 -0.187 0.255 11.847 -14.675 0.139 19 B_C20:G32_B B 20 ? B 32 ? 19 1 1 A C 21 1_555 A G 31 1_555 0.319 -0.161 0.319 -3.220 -16.584 2.530 20 B_C21:G31_B B 21 ? B 31 ? 19 1 1 A U 22 1_555 A A 30 1_555 -0.039 -0.212 0.268 -8.452 -6.443 -7.111 21 B_U22:A30_B B 22 ? B 30 ? 20 1 1 A G 15 1_555 A C 41 1_555 0.009 -0.068 0.297 -12.607 -10.724 3.532 22 B_G15:C41_B B 15 ? B 41 ? 19 1 1 B GTP 1 1_555 B C 57 1_555 -0.225 0.050 0.047 -1.255 -10.668 3.990 23 A_GTP1:C57_A A 1 ? A 57 ? 19 1 1 B A 2 1_555 B U 56 1_555 0.193 0.048 -0.015 1.058 -17.575 0.595 24 A_A2:U56_A A 2 ? A 56 ? 20 1 1 B U 3 1_555 B G 55 1_555 2.388 -0.423 0.217 1.655 -14.840 6.326 25 A_U3:G55_A A 3 ? A 55 ? 28 1 1 B G 4 1_555 B C 54 1_555 -0.838 -0.028 -0.130 -4.023 -14.497 0.628 26 A_G4:C54_A A 4 ? A 54 ? 19 1 1 B C 5 1_555 B G 53 1_555 0.284 -0.156 0.346 -2.153 -13.200 -0.065 27 A_C5:G53_A A 5 ? A 53 ? 19 1 1 B U 6 1_555 B G 52 1_555 2.363 -0.256 0.345 -4.623 -10.044 4.072 28 A_U6:G52_A A 6 ? A 52 ? 28 1 1 B G 7 1_555 B C 51 1_555 -0.516 -0.082 0.291 7.610 -4.286 -3.959 29 A_G7:C51_A A 7 ? A 51 ? 19 1 1 B C 34 1_555 B G 50 1_555 0.443 -0.370 0.092 5.565 -11.959 3.796 30 A_C34:G50_A A 34 ? A 50 ? 19 1 1 B G 35 1_555 B U 49 1_555 -2.737 -0.759 -0.135 -2.543 -11.504 -1.529 31 A_G35:U49_A A 35 ? A 49 ? 28 1 1 B G 36 1_555 B C 48 1_555 -0.343 -0.209 0.132 -3.678 -11.732 -0.078 32 A_G36:C48_A A 36 ? A 48 ? 19 1 1 B G 37 1_555 B C 47 1_555 0.012 0.048 -0.080 -8.353 -15.405 -0.652 33 A_G37:C47_A A 37 ? A 47 ? 19 1 1 B G 38 1_555 B C 46 1_555 0.024 -0.100 0.026 -21.621 -11.704 -0.371 34 A_G38:C46_A A 38 ? A 46 ? 19 1 1 B U 39 1_555 B A 43 1_555 3.981 -1.769 0.275 -2.912 14.508 -98.612 35 A_U39:A43_A A 39 ? A 43 ? 24 4 1 B U 40 1_555 B G 14 1_555 0.751 -5.295 0.231 25.921 15.527 -96.290 36 A_U40:G14_A A 40 ? A 14 ? ? 2 1 B C 16 1_555 B G 10 1_555 -0.352 -0.008 0.327 0.612 -4.934 6.950 37 A_C16:G10_A A 16 ? A 10 ? 19 1 1 B A 17 1_555 B U 9 1_555 0.238 -0.065 0.135 6.837 -10.452 5.110 38 A_A17:U9_A A 17 ? A 9 ? 20 1 1 B C 18 1_555 B G 8 1_555 0.010 -0.371 0.068 5.654 -8.655 -1.198 39 A_C18:G8_A A 18 ? A 8 ? 19 1 1 B U 19 1_555 B A 33 1_555 -0.151 0.115 0.632 1.700 -16.018 -0.553 40 A_U19:A33_A A 19 ? A 33 ? 20 1 1 B C 20 1_555 B G 32 1_555 0.410 -0.024 0.221 9.852 -24.495 0.510 41 A_C20:G32_A A 20 ? A 32 ? 19 1 1 B C 21 1_555 B G 31 1_555 -0.275 -0.260 0.680 -6.101 -17.369 -5.409 42 A_C21:G31_A A 21 ? A 31 ? 19 1 1 B U 22 1_555 B A 30 1_555 -0.055 -0.167 0.429 0.680 -12.726 -8.481 43 A_U22:A30_A A 22 ? A 30 ? 20 1 1 B G 15 1_555 B C 41 1_555 0.084 -0.001 0.425 -14.217 -6.683 0.898 44 A_G15:C41_A A 15 ? A 41 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A C 57 1_555 A A 2 1_555 A U 56 1_555 -0.047 -1.284 3.291 -0.622 4.132 38.899 -2.407 -0.004 3.144 6.183 0.931 39.114 1 BB_GTP1A2:U56C57_BB B 1 ? B 57 ? B 2 ? B 56 ? 1 A A 2 1_555 A U 56 1_555 A U 3 1_555 A G 55 1_555 0.162 -1.088 3.180 0.684 6.724 37.389 -2.483 -0.166 2.950 10.385 -1.057 37.973 2 BB_A2U3:G55U56_BB B 2 ? B 56 ? B 3 ? B 55 ? 1 A U 3 1_555 A G 55 1_555 A G 4 1_555 A C 54 1_555 -0.667 -1.566 3.097 0.520 12.055 22.769 -6.326 1.619 2.008 28.141 -1.214 25.731 3 BB_U3G4:C54G55_BB B 3 ? B 55 ? B 4 ? B 54 ? 1 A G 4 1_555 A C 54 1_555 A C 5 1_555 A G 53 1_555 0.309 -1.442 3.275 -2.065 6.513 34.084 -3.369 -0.819 2.935 10.974 3.479 34.742 4 BB_G4C5:G53C54_BB B 4 ? B 54 ? B 5 ? B 53 ? 1 A C 5 1_555 A G 53 1_555 A U 6 1_555 A G 52 1_555 0.801 -1.392 3.314 4.969 5.140 42.166 -2.427 -0.600 3.201 7.082 -6.848 42.740 5 BB_C5U6:G52G53_BB B 5 ? B 53 ? B 6 ? B 52 ? 1 A U 6 1_555 A G 52 1_555 A G 7 1_555 A C 51 1_555 -1.149 -1.674 2.774 4.795 15.245 21.224 -6.293 3.336 1.070 35.597 -11.197 26.513 6 BB_U6G7:C51G52_BB B 6 ? B 52 ? B 7 ? B 51 ? 1 A G 7 1_555 A C 51 1_555 A C 34 1_555 A G 50 1_555 -0.903 -1.615 3.443 -4.226 1.440 46.052 -2.185 0.769 3.459 1.835 5.387 46.257 7 BB_G7C34:G50C51_BB B 7 ? B 51 ? B 34 ? B 50 ? 1 A C 34 1_555 A G 50 1_555 A G 35 1_555 A U 49 1_555 0.169 -2.498 3.064 -1.260 14.212 20.673 -8.714 -0.652 1.124 34.762 3.082 25.074 8 BB_C34G35:U49G50_BB B 34 ? B 50 ? B 35 ? B 49 ? 1 A G 35 1_555 A U 49 1_555 A G 36 1_555 A C 48 1_555 -0.216 -1.523 3.214 0.289 3.855 40.905 -2.573 0.337 3.063 5.501 -0.413 41.079 9 BB_G35G36:C48U49_BB B 35 ? B 49 ? B 36 ? B 48 ? 1 A G 36 1_555 A C 48 1_555 A G 37 1_555 A C 47 1_555 0.464 -1.823 3.519 4.153 9.280 30.182 -5.033 -0.082 2.883 17.218 -7.706 31.811 10 BB_G36G37:C47C48_BB B 36 ? B 48 ? B 37 ? B 47 ? 1 A G 37 1_555 A C 47 1_555 A G 38 1_555 A C 46 1_555 0.356 -2.163 3.573 4.175 5.561 36.707 -4.150 0.023 3.242 8.734 -6.557 37.337 11 BB_G37G38:C46C47_BB B 37 ? B 47 ? B 38 ? B 46 ? 1 A G 38 1_555 A C 46 1_555 A U 39 1_555 A A 43 1_555 -1.754 -1.621 3.031 1.249 1.971 84.654 -1.246 1.328 2.979 1.464 -0.927 84.680 12 BB_G38U39:A43C46_BB B 38 ? B 46 ? B 39 ? B 43 ? 1 A U 39 1_555 A A 43 1_555 A U 40 1_555 A G 14 1_555 1.979 -2.035 3.390 9.712 4.816 42.229 -3.241 -1.665 3.499 6.556 -13.221 43.536 13 BB_U39U40:G14A43_BB B 39 ? B 43 ? B 40 ? B 14 ? 1 A C 16 1_555 A G 10 1_555 A A 17 1_555 A U 9 1_555 -0.183 -1.548 3.054 -3.854 5.978 32.397 -3.614 -0.259 2.735 10.556 6.805 33.149 14 BB_C16A17:U9G10_BB B 16 ? B 10 ? B 17 ? B 9 ? 1 A A 17 1_555 A U 9 1_555 A C 18 1_555 A G 8 1_555 0.287 -1.636 3.222 2.974 1.438 31.850 -3.221 0.004 3.160 2.611 -5.402 32.016 15 BB_A17C18:G8U9_BB B 17 ? B 9 ? B 18 ? B 8 ? 1 A C 18 1_555 A G 8 1_555 A U 19 1_555 A A 33 1_555 0.866 -1.564 3.319 -3.764 9.910 41.393 -3.097 -1.550 2.803 13.750 5.222 42.671 16 BB_C18U19:A33G8_BB B 18 ? B 8 ? B 19 ? B 33 ? 1 A U 19 1_555 A A 33 1_555 A C 20 1_555 A G 32 1_555 0.236 -1.244 3.099 -2.104 4.774 35.865 -2.618 -0.651 2.897 7.702 3.394 36.230 17 BB_U19C20:G32A33_BB B 19 ? B 33 ? B 20 ? B 32 ? 1 A C 20 1_555 A G 32 1_555 A C 21 1_555 A G 31 1_555 0.341 -1.809 3.405 1.157 9.169 34.143 -4.299 -0.395 2.849 15.273 -1.928 35.336 18 BB_C20C21:G31G32_BB B 20 ? B 32 ? B 21 ? B 31 ? 1 A C 21 1_555 A G 31 1_555 A U 22 1_555 A A 30 1_555 -0.954 -1.963 3.330 0.291 8.316 31.259 -4.913 1.763 2.723 15.101 -0.529 32.321 19 BB_C21U22:A30G31_BB B 21 ? B 31 ? B 22 ? B 30 ? 1 B GTP 1 1_555 B C 57 1_555 B A 2 1_555 B U 56 1_555 -0.223 -1.549 3.310 0.499 2.849 32.840 -3.210 0.477 3.165 5.027 -0.881 32.964 20 AA_GTP1A2:U56C57_AA A 1 ? A 57 ? A 2 ? A 56 ? 1 B A 2 1_555 B U 56 1_555 B U 3 1_555 B G 55 1_555 0.483 -1.087 3.211 -0.091 8.864 38.574 -2.593 -0.724 2.900 13.207 0.136 39.541 21 AA_A2U3:G55U56_AA A 2 ? A 56 ? A 3 ? A 55 ? 1 B U 3 1_555 B G 55 1_555 B G 4 1_555 B C 54 1_555 -0.880 -1.853 3.079 1.049 15.322 20.914 -7.346 2.185 1.375 36.521 -2.501 25.897 22 AA_U3G4:C54G55_AA A 3 ? A 55 ? A 4 ? A 54 ? 1 B G 4 1_555 B C 54 1_555 B C 5 1_555 B G 53 1_555 0.261 -1.226 3.260 -3.642 4.689 36.733 -2.528 -0.880 3.048 7.381 5.733 37.193 23 AA_G4C5:G53C54_AA A 4 ? A 54 ? A 5 ? A 53 ? 1 B C 5 1_555 B G 53 1_555 B U 6 1_555 B G 52 1_555 0.666 -1.638 3.284 3.235 4.407 38.992 -2.947 -0.611 3.131 6.563 -4.817 39.358 24 AA_C5U6:G52G53_AA A 5 ? A 53 ? A 6 ? A 52 ? 1 B U 6 1_555 B G 52 1_555 B G 7 1_555 B C 51 1_555 -1.118 -1.649 2.620 2.999 17.078 23.252 -5.660 2.651 1.040 36.553 -6.419 28.934 25 AA_U6G7:C51G52_AA A 6 ? A 52 ? A 7 ? A 51 ? 1 B G 7 1_555 B C 51 1_555 B C 34 1_555 B G 50 1_555 -1.040 -1.474 3.295 -1.024 0.969 45.248 -2.002 1.260 3.286 1.260 1.331 45.269 26 AA_G7C34:G50C51_AA A 7 ? A 51 ? A 34 ? A 50 ? 1 B C 34 1_555 B G 50 1_555 B G 35 1_555 B U 49 1_555 -0.369 -2.486 3.165 -2.266 15.116 21.511 -8.453 0.362 1.215 35.322 5.294 26.336 27 AA_C34G35:U49G50_AA A 34 ? A 50 ? A 35 ? A 49 ? 1 B G 35 1_555 B U 49 1_555 B G 36 1_555 B C 48 1_555 -0.291 -1.661 3.338 -3.217 4.055 40.097 -2.859 0.060 3.175 5.885 4.669 40.416 28 AA_G35G36:C48U49_AA A 35 ? A 49 ? A 36 ? A 48 ? 1 B G 36 1_555 B C 48 1_555 B G 37 1_555 B C 47 1_555 0.426 -1.772 3.307 1.614 6.885 32.606 -4.187 -0.484 2.900 12.086 -2.833 33.344 29 AA_G36G37:C47C48_AA A 36 ? A 48 ? A 37 ? A 47 ? 1 B G 37 1_555 B C 47 1_555 B G 38 1_555 B C 46 1_555 0.587 -2.310 3.532 4.081 5.850 36.386 -4.447 -0.356 3.180 9.259 -6.459 37.055 30 AA_G37G38:C46C47_AA A 37 ? A 47 ? A 38 ? A 46 ? 1 B G 38 1_555 B C 46 1_555 B U 39 1_555 B A 43 1_555 -2.248 -1.384 2.955 3.129 -1.814 80.130 -1.032 1.819 2.906 -1.408 -2.430 80.198 31 AA_G38U39:A43C46_AA A 38 ? A 46 ? A 39 ? A 43 ? 1 B U 39 1_555 B A 43 1_555 B U 40 1_555 B G 14 1_555 1.919 -1.880 3.440 10.626 5.237 40.897 -3.173 -1.472 3.552 7.312 -14.835 42.508 32 AA_U39U40:G14A43_AA A 39 ? A 43 ? A 40 ? A 14 ? 1 B C 16 1_555 B G 10 1_555 B A 17 1_555 B U 9 1_555 -0.017 -1.573 2.985 1.823 6.568 33.161 -3.621 0.285 2.630 11.359 -3.153 33.835 33 AA_C16A17:U9G10_AA A 16 ? A 10 ? A 17 ? A 9 ? 1 B A 17 1_555 B U 9 1_555 B C 18 1_555 B G 8 1_555 -0.103 -1.779 3.307 -0.035 3.040 30.245 -3.992 0.190 3.117 5.807 0.066 30.394 34 AA_A17C18:G8U9_AA A 17 ? A 9 ? A 18 ? A 8 ? 1 B C 18 1_555 B G 8 1_555 B U 19 1_555 B A 33 1_555 1.215 -1.608 3.195 -3.549 9.020 43.030 -2.920 -1.925 2.717 12.114 4.766 44.057 35 AA_C18U19:A33G8_AA A 18 ? A 8 ? A 19 ? A 33 ? 1 B U 19 1_555 B A 33 1_555 B C 20 1_555 B G 32 1_555 -0.124 -1.081 2.946 -0.096 5.878 36.209 -2.423 0.186 2.743 9.381 0.154 36.667 36 AA_U19C20:G32A33_AA A 19 ? A 33 ? A 20 ? A 32 ? 1 B C 20 1_555 B G 32 1_555 B C 21 1_555 B G 31 1_555 -0.439 -1.421 3.550 -4.162 9.685 33.268 -3.897 0.078 3.060 16.411 7.052 34.853 37 AA_C20C21:G31G32_AA A 20 ? A 32 ? A 21 ? A 31 ? 1 B C 21 1_555 B G 31 1_555 B U 22 1_555 B A 30 1_555 -0.279 -1.169 3.073 1.087 4.459 36.502 -2.410 0.577 2.905 7.085 -1.727 36.779 38 AA_C21U22:A30G31_AA A 21 ? A 31 ? A 22 ? A 30 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8V1H _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8V1I _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.007296 _atom_sites.fract_transf_matrix[1][2] 0.004212 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008425 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007363 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O P # loop_