HEADER PROTEIN BINDING 21-NOV-23 8V24 TITLE LAPB CYTOPLASMIC DOMAIN IN COMPLEX WITH LPXC COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE ASSEMBLY PROTEIN B; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI CFT073; SOURCE 3 ORGANISM_TAXID: 199310; SOURCE 4 STRAIN: CFT073 / ATCC 700928 / UPEC; SOURCE 5 GENE: LAPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI CFT073; SOURCE 10 ORGANISM_TAXID: 199310; SOURCE 11 STRAIN: CFT073 / ATCC 700928 / UPEC; SOURCE 12 GENE: LPXC; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS ADAPTOR, COMPLEX, DEACETYLASE, LPS, LPXC, LAPB(YCIM), PROTEIN BINDING EXPDTA ELECTRON MICROSCOPY AUTHOR W.MI,S.SHU REVDAT 3 08-MAY-24 8V24 1 JRNL REVDAT 2 01-MAY-24 8V24 1 JRNL REVDAT 1 24-APR-24 8V24 0 JRNL AUTH S.SHU,Y.TSUTSUI,R.NATHAWAT,W.MI JRNL TITL DUAL FUNCTION OF LAPB (YCIM) IN REGULATING ESCHERICHIA COLI JRNL TITL 2 LIPOPOLYSACCHARIDE SYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 10121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38635633 JRNL DOI 10.1073/PNAS.2321510121 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 117119 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8V24 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278966. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LAPB/LPXC REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 TYR A 15 REMARK 465 GLY A 16 REMARK 465 TRP A 17 REMARK 465 TYR A 18 REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 ARG A 21 REMARK 465 ARG A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 GLN A 26 REMARK 465 ASN A 27 REMARK 465 LYS A 28 REMARK 465 GLN A 29 REMARK 465 ASP A 30 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 ASN A 33 REMARK 465 ARG A 34 REMARK 465 LEU A 35 REMARK 465 SER A 36 REMARK 465 ARG A 37 REMARK 465 ASP A 38 REMARK 465 TYR A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 41 REMARK 465 GLY A 42 REMARK 465 VAL A 43 REMARK 465 ASN A 44 REMARK 465 PHE A 45 REMARK 465 LEU A 46 REMARK 465 LEU A 47 REMARK 465 SER A 48 REMARK 465 ASN A 49 REMARK 465 GLN A 50 REMARK 465 GLN A 51 REMARK 465 ASP A 52 REMARK 465 LYS A 53 REMARK 465 ALA A 54 REMARK 465 VAL A 55 REMARK 465 ASP A 56 REMARK 465 LEU A 57 REMARK 465 PHE A 58 REMARK 465 LEU A 59 REMARK 465 ASP A 60 REMARK 465 MET A 61 REMARK 465 LEU A 62 REMARK 465 ALA B 302 REMARK 465 VAL B 303 REMARK 465 LEU B 304 REMARK 465 ALA B 305 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 GLU C 3 REMARK 465 LEU C 4 REMARK 465 LEU C 5 REMARK 465 PHE C 6 REMARK 465 LEU C 7 REMARK 465 LEU C 8 REMARK 465 LEU C 9 REMARK 465 PRO C 10 REMARK 465 VAL C 11 REMARK 465 ALA C 12 REMARK 465 ALA C 13 REMARK 465 ALA C 14 REMARK 465 TYR C 15 REMARK 465 GLY C 16 REMARK 465 TRP C 17 REMARK 465 TYR C 18 REMARK 465 MET C 19 REMARK 465 GLY C 20 REMARK 465 ARG C 21 REMARK 465 ARG C 22 REMARK 465 SER C 23 REMARK 465 ALA C 24 REMARK 465 GLN C 25 REMARK 465 GLN C 26 REMARK 465 ASN C 27 REMARK 465 LYS C 28 REMARK 465 GLN C 29 REMARK 465 ASP C 30 REMARK 465 GLU C 31 REMARK 465 ALA C 32 REMARK 465 ASN C 33 REMARK 465 ARG C 34 REMARK 465 LEU C 35 REMARK 465 SER C 36 REMARK 465 ARG C 37 REMARK 465 ASP C 38 REMARK 465 TYR C 39 REMARK 465 VAL C 40 REMARK 465 ALA C 41 REMARK 465 GLY C 42 REMARK 465 VAL C 43 REMARK 465 ASN C 44 REMARK 465 PHE C 45 REMARK 465 LEU C 46 REMARK 465 LEU C 47 REMARK 465 SER C 48 REMARK 465 ASN C 49 REMARK 465 GLN C 50 REMARK 465 GLN C 51 REMARK 465 ASP C 52 REMARK 465 LYS C 53 REMARK 465 ALA C 54 REMARK 465 VAL C 55 REMARK 465 ASP C 56 REMARK 465 LEU C 57 REMARK 465 PHE C 58 REMARK 465 LEU C 59 REMARK 465 ASP C 60 REMARK 465 MET C 61 REMARK 465 LEU C 62 REMARK 465 LYS C 63 REMARK 465 GLU C 64 REMARK 465 ASP C 65 REMARK 465 THR C 66 REMARK 465 VAL D 303 REMARK 465 LEU D 304 REMARK 465 ALA D 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 357 ZN ZN A 401 1.16 REMARK 500 HG CYS C 357 ZN ZN C 401 1.22 REMARK 500 HG CYS C 360 ZN ZN C 401 1.58 REMARK 500 OH TYR D 39 OD1 ASN D 81 1.93 REMARK 500 OG1 THR B 64 OD1 ASP B 246 1.97 REMARK 500 OH TYR B 39 OD1 ASN B 81 1.99 REMARK 500 OD2 ASP B 90 NZ LYS B 127 2.12 REMARK 500 OD1 ASP D 90 NZ LYS D 127 2.15 REMARK 500 OG SER D 263 OD1 ASN D 268 2.18 REMARK 500 NH2 ARG C 82 OE2 GLU C 84 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 46 N - CA - CB ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 69 -71.06 42.01 REMARK 500 GLN A 175 54.82 -91.89 REMARK 500 ASP A 244 117.18 -160.46 REMARK 500 SER A 298 -60.83 -95.60 REMARK 500 GLU A 331 179.78 61.35 REMARK 500 LEU A 338 -6.09 -57.95 REMARK 500 ARG A 342 -10.83 77.58 REMARK 500 GLN A 358 44.47 -91.12 REMARK 500 LYS A 359 -23.90 -140.14 REMARK 500 LEU A 386 21.45 49.65 REMARK 500 MET B 104 -119.99 64.32 REMARK 500 GLN B 171 47.79 -92.17 REMARK 500 ARG B 172 131.14 -171.76 REMARK 500 SER B 178 149.98 -171.12 REMARK 500 ASP B 219 -166.16 -79.09 REMARK 500 ALA B 299 62.10 -159.64 REMARK 500 LEU C 73 -4.40 69.89 REMARK 500 THR C 154 47.69 -92.93 REMARK 500 SER C 155 49.18 35.33 REMARK 500 ALA C 192 -5.82 74.16 REMARK 500 ILE D 2 -54.32 64.05 REMARK 500 LYS D 3 142.25 71.71 REMARK 500 PRO D 46 -153.14 34.70 REMARK 500 CYS D 63 118.74 -161.89 REMARK 500 PRO D 99 46.25 -77.42 REMARK 500 GLU D 100 141.89 -173.25 REMARK 500 MET D 104 -118.42 58.72 REMARK 500 CYS D 125 148.74 -170.65 REMARK 500 ASN D 162 48.28 35.17 REMARK 500 ASP D 219 -167.41 -79.46 REMARK 500 GLU D 292 -167.25 60.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 CYS A 360 SG 110.1 REMARK 620 3 CYS A 371 SG 106.4 109.6 REMARK 620 4 CYS A 374 SG 111.1 109.6 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 HIS B 238 NE2 100.1 REMARK 620 3 ASP B 242 OD1 94.2 94.0 REMARK 620 4 ASP B 242 OD2 156.9 95.3 67.6 REMARK 620 5 ACT B 402 OXT 107.6 96.2 153.9 87.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 357 SG REMARK 620 2 CYS C 360 SG 114.4 REMARK 620 3 CYS C 371 SG 108.8 104.5 REMARK 620 4 CYS C 374 SG 109.7 109.4 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 78 OE2 REMARK 620 2 HIS D 79 NE2 87.9 REMARK 620 3 HIS D 238 NE2 168.1 95.3 REMARK 620 4 ASP D 242 OD1 97.2 95.9 93.9 REMARK 620 5 ASP D 242 OD2 81.3 155.6 99.7 64.1 REMARK 620 6 ACT D 402 OXT 77.2 118.8 91.3 144.2 80.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-42897 RELATED DB: EMDB REMARK 900 LAPB CYTOPLASMIC DOMAIN IN COMPLEX WITH LPXC DBREF 8V24 A 1 389 UNP P0AB59 LAPB_ECOL6 1 389 DBREF 8V24 B 1 305 UNP P0A726 LPXC_ECOL6 1 305 DBREF 8V24 C 1 389 UNP P0AB59 LAPB_ECOL6 1 389 DBREF 8V24 D 1 305 UNP P0A726 LPXC_ECOL6 1 305 SEQRES 1 A 389 MET LEU GLU LEU LEU PHE LEU LEU LEU PRO VAL ALA ALA SEQRES 2 A 389 ALA TYR GLY TRP TYR MET GLY ARG ARG SER ALA GLN GLN SEQRES 3 A 389 ASN LYS GLN ASP GLU ALA ASN ARG LEU SER ARG ASP TYR SEQRES 4 A 389 VAL ALA GLY VAL ASN PHE LEU LEU SER ASN GLN GLN ASP SEQRES 5 A 389 LYS ALA VAL ASP LEU PHE LEU ASP MET LEU LYS GLU ASP SEQRES 6 A 389 THR GLY THR VAL GLU ALA HIS LEU THR LEU GLY ASN LEU SEQRES 7 A 389 PHE ARG SER ARG GLY GLU VAL ASP ARG ALA ILE ARG ILE SEQRES 8 A 389 HIS GLN THR LEU MET GLU SER ALA SER LEU THR TYR GLU SEQRES 9 A 389 GLN ARG LEU LEU ALA ILE GLN GLN LEU GLY ARG ASP TYR SEQRES 10 A 389 MET ALA ALA GLY LEU TYR ASP ARG ALA GLU ASP MET PHE SEQRES 11 A 389 ASN GLN LEU THR ASP GLU THR ASP PHE ARG ILE GLY ALA SEQRES 12 A 389 LEU GLN GLN LEU LEU GLN ILE TYR GLN ALA THR SER GLU SEQRES 13 A 389 TRP GLN LYS ALA ILE ASP VAL ALA GLU ARG LEU VAL LYS SEQRES 14 A 389 LEU GLY LYS ASP LYS GLN ARG VAL GLU ILE ALA HIS PHE SEQRES 15 A 389 TYR CYS GLU LEU ALA LEU GLN HIS MET ALA SER ASP ASP SEQRES 16 A 389 LEU ASP ARG ALA MET THR LEU LEU LYS LYS GLY ALA ALA SEQRES 17 A 389 ALA ASP LYS ASN SER ALA ARG VAL SER ILE MET MET GLY SEQRES 18 A 389 ARG VAL PHE MET ALA LYS GLY GLU TYR ALA LYS ALA VAL SEQRES 19 A 389 GLU SER LEU GLN ARG VAL ILE SER GLN ASP ARG GLU LEU SEQRES 20 A 389 VAL SER GLU THR LEU GLU MET LEU GLN THR CYS TYR GLN SEQRES 21 A 389 GLN LEU GLY LYS THR ALA GLU TRP ALA GLU PHE LEU GLN SEQRES 22 A 389 ARG ALA VAL GLU GLU ASN THR GLY ALA ASP ALA GLU LEU SEQRES 23 A 389 MET LEU ALA ASP ILE ILE GLU ALA ARG ASP GLY SER GLU SEQRES 24 A 389 ALA ALA GLN VAL TYR ILE THR ARG GLN LEU GLN ARG HIS SEQRES 25 A 389 PRO THR MET ARG VAL PHE HIS LYS LEU MET ASP TYR HIS SEQRES 26 A 389 LEU ASN GLU ALA GLU GLU GLY ARG ALA LYS GLU SER LEU SEQRES 27 A 389 MET VAL LEU ARG ASP MET VAL GLY GLU LYS VAL ARG SER SEQRES 28 A 389 LYS PRO ARG TYR ARG CYS GLN LYS CYS GLY PHE THR ALA SEQRES 29 A 389 TYR THR LEU TYR TRP HIS CYS PRO SER CYS ARG ALA TRP SEQRES 30 A 389 SER THR ILE LYS PRO ILE ARG GLY LEU ASP GLY LEU SEQRES 1 B 305 MET ILE LYS GLN ARG THR LEU LYS ARG ILE VAL GLN ALA SEQRES 2 B 305 THR GLY VAL GLY LEU HIS THR GLY LYS LYS VAL THR LEU SEQRES 3 B 305 THR LEU ARG PRO ALA PRO ALA ASN THR GLY VAL ILE TYR SEQRES 4 B 305 ARG ARG THR ASP LEU ASN PRO PRO VAL ASP PHE PRO ALA SEQRES 5 B 305 ASP ALA LYS SER VAL ARG ASP THR MET LEU CYS THR CYS SEQRES 6 B 305 LEU VAL ASN GLU HIS ASP VAL ARG ILE SER THR VAL GLU SEQRES 7 B 305 HIS LEU ASN ALA ALA LEU ALA GLY LEU GLY ILE ASP ASN SEQRES 8 B 305 ILE VAL ILE GLU VAL ASN ALA PRO GLU ILE PRO ILE MET SEQRES 9 B 305 ASP GLY SER ALA ALA PRO PHE VAL TYR LEU LEU LEU ASP SEQRES 10 B 305 ALA GLY ILE ASP GLU LEU ASN CYS ALA LYS LYS PHE VAL SEQRES 11 B 305 ARG ILE LYS GLU THR VAL ARG VAL GLU ASP GLY ASP LYS SEQRES 12 B 305 TRP ALA GLU PHE LYS PRO TYR ASN GLY PHE SER LEU ASP SEQRES 13 B 305 PHE THR ILE ASP PHE ASN HIS PRO ALA ILE ASP SER SER SEQRES 14 B 305 ASN GLN ARG TYR ALA MET ASN PHE SER ALA ASP ALA PHE SEQRES 15 B 305 MET ARG GLN ILE SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 B 305 ARG ASP ILE GLU TYR LEU GLN SER ARG GLY LEU CYS LEU SEQRES 17 B 305 GLY GLY SER PHE ASP CYS ALA ILE VAL VAL ASP ASP TYR SEQRES 18 B 305 ARG VAL LEU ASN GLU ASP GLY LEU ARG PHE GLU ASP GLU SEQRES 19 B 305 PHE VAL ARG HIS LYS MET LEU ASP ALA ILE GLY ASP LEU SEQRES 20 B 305 PHE MET CYS GLY HIS ASN ILE ILE GLY ALA PHE THR ALA SEQRES 21 B 305 TYR LYS SER GLY HIS ALA LEU ASN ASN LYS LEU LEU GLN SEQRES 22 B 305 ALA VAL LEU ALA LYS GLN GLU ALA TRP GLU TYR VAL THR SEQRES 23 B 305 PHE GLN ASP ASP ALA GLU LEU PRO LEU ALA PHE LYS ALA SEQRES 24 B 305 PRO SER ALA VAL LEU ALA SEQRES 1 C 389 MET LEU GLU LEU LEU PHE LEU LEU LEU PRO VAL ALA ALA SEQRES 2 C 389 ALA TYR GLY TRP TYR MET GLY ARG ARG SER ALA GLN GLN SEQRES 3 C 389 ASN LYS GLN ASP GLU ALA ASN ARG LEU SER ARG ASP TYR SEQRES 4 C 389 VAL ALA GLY VAL ASN PHE LEU LEU SER ASN GLN GLN ASP SEQRES 5 C 389 LYS ALA VAL ASP LEU PHE LEU ASP MET LEU LYS GLU ASP SEQRES 6 C 389 THR GLY THR VAL GLU ALA HIS LEU THR LEU GLY ASN LEU SEQRES 7 C 389 PHE ARG SER ARG GLY GLU VAL ASP ARG ALA ILE ARG ILE SEQRES 8 C 389 HIS GLN THR LEU MET GLU SER ALA SER LEU THR TYR GLU SEQRES 9 C 389 GLN ARG LEU LEU ALA ILE GLN GLN LEU GLY ARG ASP TYR SEQRES 10 C 389 MET ALA ALA GLY LEU TYR ASP ARG ALA GLU ASP MET PHE SEQRES 11 C 389 ASN GLN LEU THR ASP GLU THR ASP PHE ARG ILE GLY ALA SEQRES 12 C 389 LEU GLN GLN LEU LEU GLN ILE TYR GLN ALA THR SER GLU SEQRES 13 C 389 TRP GLN LYS ALA ILE ASP VAL ALA GLU ARG LEU VAL LYS SEQRES 14 C 389 LEU GLY LYS ASP LYS GLN ARG VAL GLU ILE ALA HIS PHE SEQRES 15 C 389 TYR CYS GLU LEU ALA LEU GLN HIS MET ALA SER ASP ASP SEQRES 16 C 389 LEU ASP ARG ALA MET THR LEU LEU LYS LYS GLY ALA ALA SEQRES 17 C 389 ALA ASP LYS ASN SER ALA ARG VAL SER ILE MET MET GLY SEQRES 18 C 389 ARG VAL PHE MET ALA LYS GLY GLU TYR ALA LYS ALA VAL SEQRES 19 C 389 GLU SER LEU GLN ARG VAL ILE SER GLN ASP ARG GLU LEU SEQRES 20 C 389 VAL SER GLU THR LEU GLU MET LEU GLN THR CYS TYR GLN SEQRES 21 C 389 GLN LEU GLY LYS THR ALA GLU TRP ALA GLU PHE LEU GLN SEQRES 22 C 389 ARG ALA VAL GLU GLU ASN THR GLY ALA ASP ALA GLU LEU SEQRES 23 C 389 MET LEU ALA ASP ILE ILE GLU ALA ARG ASP GLY SER GLU SEQRES 24 C 389 ALA ALA GLN VAL TYR ILE THR ARG GLN LEU GLN ARG HIS SEQRES 25 C 389 PRO THR MET ARG VAL PHE HIS LYS LEU MET ASP TYR HIS SEQRES 26 C 389 LEU ASN GLU ALA GLU GLU GLY ARG ALA LYS GLU SER LEU SEQRES 27 C 389 MET VAL LEU ARG ASP MET VAL GLY GLU LYS VAL ARG SER SEQRES 28 C 389 LYS PRO ARG TYR ARG CYS GLN LYS CYS GLY PHE THR ALA SEQRES 29 C 389 TYR THR LEU TYR TRP HIS CYS PRO SER CYS ARG ALA TRP SEQRES 30 C 389 SER THR ILE LYS PRO ILE ARG GLY LEU ASP GLY LEU SEQRES 1 D 305 MET ILE LYS GLN ARG THR LEU LYS ARG ILE VAL GLN ALA SEQRES 2 D 305 THR GLY VAL GLY LEU HIS THR GLY LYS LYS VAL THR LEU SEQRES 3 D 305 THR LEU ARG PRO ALA PRO ALA ASN THR GLY VAL ILE TYR SEQRES 4 D 305 ARG ARG THR ASP LEU ASN PRO PRO VAL ASP PHE PRO ALA SEQRES 5 D 305 ASP ALA LYS SER VAL ARG ASP THR MET LEU CYS THR CYS SEQRES 6 D 305 LEU VAL ASN GLU HIS ASP VAL ARG ILE SER THR VAL GLU SEQRES 7 D 305 HIS LEU ASN ALA ALA LEU ALA GLY LEU GLY ILE ASP ASN SEQRES 8 D 305 ILE VAL ILE GLU VAL ASN ALA PRO GLU ILE PRO ILE MET SEQRES 9 D 305 ASP GLY SER ALA ALA PRO PHE VAL TYR LEU LEU LEU ASP SEQRES 10 D 305 ALA GLY ILE ASP GLU LEU ASN CYS ALA LYS LYS PHE VAL SEQRES 11 D 305 ARG ILE LYS GLU THR VAL ARG VAL GLU ASP GLY ASP LYS SEQRES 12 D 305 TRP ALA GLU PHE LYS PRO TYR ASN GLY PHE SER LEU ASP SEQRES 13 D 305 PHE THR ILE ASP PHE ASN HIS PRO ALA ILE ASP SER SER SEQRES 14 D 305 ASN GLN ARG TYR ALA MET ASN PHE SER ALA ASP ALA PHE SEQRES 15 D 305 MET ARG GLN ILE SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 D 305 ARG ASP ILE GLU TYR LEU GLN SER ARG GLY LEU CYS LEU SEQRES 17 D 305 GLY GLY SER PHE ASP CYS ALA ILE VAL VAL ASP ASP TYR SEQRES 18 D 305 ARG VAL LEU ASN GLU ASP GLY LEU ARG PHE GLU ASP GLU SEQRES 19 D 305 PHE VAL ARG HIS LYS MET LEU ASP ALA ILE GLY ASP LEU SEQRES 20 D 305 PHE MET CYS GLY HIS ASN ILE ILE GLY ALA PHE THR ALA SEQRES 21 D 305 TYR LYS SER GLY HIS ALA LEU ASN ASN LYS LEU LEU GLN SEQRES 22 D 305 ALA VAL LEU ALA LYS GLN GLU ALA TRP GLU TYR VAL THR SEQRES 23 D 305 PHE GLN ASP ASP ALA GLU LEU PRO LEU ALA PHE LYS ALA SEQRES 24 D 305 PRO SER ALA VAL LEU ALA HET ZN A 401 1 HET 24G B 401 101 HET ACT B 402 7 HET ZN B 403 1 HET ZN C 401 1 HET 24G D 401 101 HET ACT D 402 7 HET ZN D 403 1 HETNAM ZN ZINC ION HETNAM 24G URIDINE-5'-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)- HETNAM 2 24G GLUCOSAMINE HETNAM ACT ACETATE ION HETSYN 24G (2R,3R,4R,5S,6R)-3-AMINO-2-{[(R)-{[(S)-{[(2R,3S,4R,5R)- HETSYN 2 24G 5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETSYN 3 24G DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY) HETSYN 4 24G PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6- HETSYN 5 24G (HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-4-YL (3R)-3- HETSYN 6 24G HYDROXYTETRADECANOATE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 24G 2(C29 H51 N3 O18 P2) FORMUL 7 ACT 2(C2 H3 O2 1-) HELIX 1 AA1 VAL A 69 GLY A 83 1 15 HELIX 2 AA2 GLU A 84 SER A 98 1 15 HELIX 3 AA3 THR A 102 GLY A 121 1 20 HELIX 4 AA4 LEU A 122 ASN A 131 1 10 HELIX 5 AA5 PHE A 139 THR A 154 1 16 HELIX 6 AA6 GLU A 156 LEU A 170 1 15 HELIX 7 AA7 ARG A 176 ALA A 192 1 17 HELIX 8 AA8 ASP A 195 ASP A 210 1 16 HELIX 9 AA9 SER A 213 GLY A 228 1 16 HELIX 10 AB1 GLU A 229 ARG A 239 1 11 HELIX 11 AB2 ARG A 239 ASP A 244 1 6 HELIX 12 AB3 VAL A 248 GLY A 263 1 16 HELIX 13 AB4 LYS A 264 GLU A 278 1 15 HELIX 14 AB5 GLY A 281 GLY A 297 1 17 HELIX 15 AB6 GLU A 299 ALA A 301 5 3 HELIX 16 AB7 GLN A 302 HIS A 312 1 11 HELIX 17 AB8 THR A 314 GLU A 328 1 15 HELIX 18 AB9 GLY A 332 LEU A 341 1 10 HELIX 19 AC1 MET A 344 LYS A 348 5 5 HELIX 20 AC2 ASP B 53 LYS B 55 5 3 HELIX 21 AC3 HIS B 79 GLY B 88 1 10 HELIX 22 AC4 ALA B 108 GLY B 119 1 12 HELIX 23 AC5 SER B 178 ILE B 186 1 9 HELIX 24 AC6 ASP B 197 ARG B 204 1 8 HELIX 25 AC7 SER B 211 ALA B 215 5 5 HELIX 26 AC8 ASP B 233 PHE B 248 1 16 HELIX 27 AC9 MET B 249 GLY B 251 5 3 HELIX 28 AD1 GLY B 264 LYS B 278 1 15 HELIX 29 AD2 THR C 68 HIS C 72 1 5 HELIX 30 AD3 THR C 74 GLY C 83 1 10 HELIX 31 AD4 GLU C 84 SER C 98 1 15 HELIX 32 AD5 THR C 102 GLY C 121 1 20 HELIX 33 AD6 LEU C 122 ASN C 131 1 10 HELIX 34 AD7 PHE C 139 THR C 154 1 16 HELIX 35 AD8 GLU C 156 LEU C 170 1 15 HELIX 36 AD9 LYS C 172 LYS C 174 5 3 HELIX 37 AE1 GLN C 175 MET C 191 1 17 HELIX 38 AE2 ASP C 195 ASP C 210 1 16 HELIX 39 AE3 SER C 213 GLY C 228 1 16 HELIX 40 AE4 GLU C 229 GLN C 238 1 10 HELIX 41 AE5 GLN C 238 ASP C 244 1 7 HELIX 42 AE6 LEU C 247 GLN C 261 1 15 HELIX 43 AE7 LYS C 264 GLU C 278 1 15 HELIX 44 AE8 GLY C 281 HIS C 312 1 32 HELIX 45 AE9 THR C 314 GLU C 328 1 15 HELIX 46 AF1 GLY C 332 LYS C 352 1 21 HELIX 47 AF2 VAL D 77 GLY D 88 1 12 HELIX 48 AF3 ALA D 108 GLY D 119 1 12 HELIX 49 AF4 SER D 178 ILE D 186 1 9 HELIX 50 AF5 ILE D 198 GLY D 205 1 8 HELIX 51 AF6 SER D 211 ALA D 215 5 5 HELIX 52 AF7 ASP D 233 PHE D 248 1 16 HELIX 53 AF8 MET D 249 GLY D 251 5 3 HELIX 54 AF9 GLY D 264 LYS D 278 1 15 SHEET 1 AA1 3 THR A 363 ALA A 364 0 SHEET 2 AA1 3 TYR A 355 CYS A 357 -1 N TYR A 355 O ALA A 364 SHEET 3 AA1 3 ILE A 380 PRO A 382 -1 O LYS A 381 N ARG A 356 SHEET 1 AA2 5 VAL B 11 VAL B 16 0 SHEET 2 AA2 5 LYS B 23 PRO B 30 -1 O LEU B 28 N VAL B 11 SHEET 3 AA2 5 ILE B 92 VAL B 96 -1 O VAL B 93 N ARG B 29 SHEET 4 AA2 5 ILE B 38 ARG B 41 1 N ILE B 38 O ILE B 92 SHEET 5 AA2 5 VAL B 48 PRO B 51 -1 O PHE B 50 N TYR B 39 SHEET 1 AA3 3 VAL B 57 ASP B 59 0 SHEET 2 AA3 3 CYS B 65 VAL B 67 -1 O CYS B 65 N ASP B 59 SHEET 3 AA3 3 ARG B 73 ILE B 74 -1 O ILE B 74 N LEU B 66 SHEET 1 AA4 5 VAL B 136 GLU B 139 0 SHEET 2 AA4 5 TRP B 144 LYS B 148 -1 O PHE B 147 N VAL B 136 SHEET 3 AA4 5 ILE B 254 TYR B 261 -1 O THR B 259 N GLU B 146 SHEET 4 AA4 5 PHE B 153 THR B 158 1 N SER B 154 O PHE B 258 SHEET 5 AA4 5 ARG B 172 ASN B 176 -1 O MET B 175 N LEU B 155 SHEET 1 AA5 5 VAL B 136 GLU B 139 0 SHEET 2 AA5 5 TRP B 144 LYS B 148 -1 O PHE B 147 N VAL B 136 SHEET 3 AA5 5 ILE B 254 TYR B 261 -1 O THR B 259 N GLU B 146 SHEET 4 AA5 5 LYS B 128 ILE B 132 1 N ILE B 132 O ILE B 255 SHEET 5 AA5 5 TRP B 282 THR B 286 -1 O VAL B 285 N PHE B 129 SHEET 1 AA6 2 PHE B 192 PHE B 194 0 SHEET 2 AA6 2 ILE B 216 VAL B 218 1 O ILE B 216 N GLY B 193 SHEET 1 AA7 3 THR C 363 ALA C 364 0 SHEET 2 AA7 3 TYR C 355 CYS C 357 -1 N TYR C 355 O ALA C 364 SHEET 3 AA7 3 ILE C 380 PRO C 382 -1 O LYS C 381 N ARG C 356 SHEET 1 AA8 2 ARG D 5 LEU D 7 0 SHEET 2 AA8 2 ILE D 120 GLU D 122 -1 O ASP D 121 N THR D 6 SHEET 1 AA9 5 VAL D 11 VAL D 16 0 SHEET 2 AA9 5 LYS D 23 PRO D 30 -1 O VAL D 24 N GLY D 15 SHEET 3 AA9 5 ILE D 92 VAL D 96 -1 O VAL D 93 N ARG D 29 SHEET 4 AA9 5 ILE D 38 ARG D 41 1 N ARG D 40 O ILE D 94 SHEET 5 AA9 5 VAL D 48 PRO D 51 -1 O PHE D 50 N TYR D 39 SHEET 1 AB1 3 VAL D 57 ASP D 59 0 SHEET 2 AB1 3 CYS D 65 VAL D 67 -1 O CYS D 65 N ASP D 59 SHEET 3 AB1 3 ARG D 73 ILE D 74 -1 O ILE D 74 N LEU D 66 SHEET 1 AB2 5 VAL D 136 GLU D 139 0 SHEET 2 AB2 5 TRP D 144 LYS D 148 -1 O ALA D 145 N VAL D 138 SHEET 3 AB2 5 ILE D 254 TYR D 261 -1 O TYR D 261 N TRP D 144 SHEET 4 AB2 5 PHE D 153 THR D 158 1 N SER D 154 O PHE D 258 SHEET 5 AB2 5 ARG D 172 ASN D 176 -1 O TYR D 173 N PHE D 157 SHEET 1 AB3 5 VAL D 136 GLU D 139 0 SHEET 2 AB3 5 TRP D 144 LYS D 148 -1 O ALA D 145 N VAL D 138 SHEET 3 AB3 5 ILE D 254 TYR D 261 -1 O TYR D 261 N TRP D 144 SHEET 4 AB3 5 PHE D 129 ILE D 132 1 N VAL D 130 O ILE D 255 SHEET 5 AB3 5 TRP D 282 VAL D 285 -1 O GLU D 283 N ARG D 131 SHEET 1 AB4 2 GLY D 193 PHE D 194 0 SHEET 2 AB4 2 VAL D 217 VAL D 218 1 O VAL D 218 N GLY D 193 LINK SG CYS A 357 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 360 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 371 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 374 ZN ZN A 401 1555 1555 2.33 LINK NE2 HIS B 79 ZN ZN B 403 1555 1555 2.30 LINK NE2 HIS B 238 ZN ZN B 403 1555 1555 2.30 LINK OD1 ASP B 242 ZN ZN B 403 1555 1555 1.94 LINK OD2 ASP B 242 ZN ZN B 403 1555 1555 2.00 LINK OXT ACT B 402 ZN ZN B 403 1555 1555 1.88 LINK SG CYS C 357 ZN ZN C 401 1555 1555 2.33 LINK SG CYS C 360 ZN ZN C 401 1555 1555 2.33 LINK SG CYS C 371 ZN ZN C 401 1555 1555 2.32 LINK SG CYS C 374 ZN ZN C 401 1555 1555 2.32 LINK OE2 GLU D 78 ZN ZN D 403 1555 1555 2.09 LINK NE2 HIS D 79 ZN ZN D 403 1555 1555 2.30 LINK NE2 HIS D 238 ZN ZN D 403 1555 1555 2.30 LINK OD1 ASP D 242 ZN ZN D 403 1555 1555 1.97 LINK OD2 ASP D 242 ZN ZN D 403 1555 1555 2.14 LINK OXT ACT D 402 ZN ZN D 403 1555 1555 1.98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000