HEADER ONCOPROTEIN/INHIBITOR 27-NOV-23 8V39 TITLE CRYSTAL STRUCTURE OF ACTIVE KRAS-G12C (GMPPNP-BOUND) IN COMPLEX WITH TITLE 2 BBO-8520 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS, RAS, K-RAS, KRAS4B, INHIBITOR, BBO8520, BBO-8520, BBO, THERAS, KEYWDS 2 BRIDGEBIO, ONCOPROTEIN, ONCOPROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.H.CHAN,M.ASHRAF,S.DHARMAIAH,D.K.SIMANSHU REVDAT 1 18-DEC-24 8V39 0 JRNL AUTH A.E.MACIAG,J.P.STICE,B.WANG,A.K.SHARMA,A.H.CHAN,K.LIN, JRNL AUTH 2 D.SINGH,M.DYBA,Y.YANG,S.SETOODEH,B.P.SMITH,J.H.JU,S.JEKNIC, JRNL AUTH 3 D.RABARA,Z.ZHANG,E.K.LARSEN,D.ESPOSITO,J.P.DENSON,M.RANIERI, JRNL AUTH 4 M.MEYNARDIE,S.MEHDIZADEH,P.A.ALEXANDER,M.ABREU BLANCO, JRNL AUTH 5 D.M.TURNER,R.XU,F.C.LIGHTSTONE,K.K.WONG,A.G.STEPHEN,K.WANG, JRNL AUTH 6 D.K.SIMANSHU,K.W.SINKEVICIUS,D.V.NISSLEY,E.WALLACE, JRNL AUTH 7 F.MCCORMICK,P.J.BELTRAN JRNL TITL DISCOVERY OF BBO-8520, A FIRST-IN-CLASS DIRECT AND COVALENT JRNL TITL 2 DUAL INHIBITOR OF GTP-BOUND (ON) AND GDP-BOUND (OFF) JRNL TITL 3 KRASG12C. JRNL REF CANCER DISCOV 2024 JRNL REFN ESSN 2159-8290 JRNL PMID 39642212 JRNL DOI 10.1158/2159-8290.CD-24-0840 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 42116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7800 - 6.5200 0.91 1319 152 0.3435 0.4314 REMARK 3 2 6.5200 - 5.1800 0.99 1339 149 0.3111 0.2799 REMARK 3 3 5.1800 - 4.5200 0.99 1309 145 0.2588 0.2823 REMARK 3 4 4.5200 - 4.1100 0.99 1301 144 0.2353 0.2912 REMARK 3 5 4.1100 - 3.8200 1.00 1293 143 0.2507 0.3196 REMARK 3 6 3.8200 - 3.5900 0.99 1275 142 0.2416 0.3808 REMARK 3 7 3.5900 - 3.4100 0.99 1265 140 0.2264 0.2502 REMARK 3 8 3.4100 - 3.2600 0.99 1281 143 0.2466 0.2698 REMARK 3 9 3.2600 - 3.1400 1.00 1254 139 0.2446 0.3070 REMARK 3 10 3.1400 - 3.0300 0.99 1286 143 0.2602 0.3338 REMARK 3 11 3.0300 - 2.9300 0.99 1258 141 0.2512 0.2894 REMARK 3 12 2.9300 - 2.8500 0.99 1259 141 0.2452 0.2893 REMARK 3 13 2.8500 - 2.7700 0.99 1254 138 0.2625 0.3084 REMARK 3 14 2.7700 - 2.7100 1.00 1253 139 0.2716 0.2926 REMARK 3 15 2.7100 - 2.6500 0.99 1245 138 0.2712 0.2848 REMARK 3 16 2.6500 - 2.5900 0.99 1267 141 0.2670 0.2809 REMARK 3 17 2.5900 - 2.5400 0.99 1248 140 0.2529 0.3000 REMARK 3 18 2.5400 - 2.4900 0.99 1241 139 0.2639 0.3654 REMARK 3 19 2.4900 - 2.4500 0.99 1255 141 0.2553 0.2967 REMARK 3 20 2.4500 - 2.4000 1.00 1243 136 0.2464 0.2581 REMARK 3 21 2.4000 - 2.3700 0.99 1248 140 0.2493 0.2979 REMARK 3 22 2.3700 - 2.3300 1.00 1245 139 0.2675 0.3306 REMARK 3 23 2.3300 - 2.2900 1.00 1258 140 0.2682 0.3673 REMARK 3 24 2.2900 - 2.2600 1.00 1244 139 0.2709 0.3327 REMARK 3 25 2.2600 - 2.2300 1.00 1229 137 0.2728 0.3263 REMARK 3 26 2.2300 - 2.2000 1.00 1269 141 0.2831 0.2889 REMARK 3 27 2.2000 - 2.1800 0.99 1234 138 0.2905 0.3815 REMARK 3 28 2.1700 - 2.1500 1.00 1228 135 0.2995 0.2978 REMARK 3 29 2.1500 - 2.1200 0.99 1253 140 0.3273 0.3883 REMARK 3 30 2.1200 - 2.1000 0.99 1242 138 0.3345 0.3576 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4346 REMARK 3 ANGLE : 0.993 5929 REMARK 3 CHIRALITY : 0.056 651 REMARK 3 PLANARITY : 0.009 743 REMARK 3 DIHEDRAL : 15.114 1665 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 201) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5171 18.2366 -6.1901 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.1049 REMARK 3 T33: 0.1133 T12: 0.0456 REMARK 3 T13: -0.0200 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.0130 L22: 2.7074 REMARK 3 L33: 2.0493 L12: -0.4727 REMARK 3 L13: -0.0876 L23: -0.4228 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: 0.1133 S13: 0.2427 REMARK 3 S21: 0.0116 S22: -0.1328 S23: -0.0432 REMARK 3 S31: -0.3703 S32: -0.1352 S33: 0.0605 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 201) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3876 48.7735 -6.1355 REMARK 3 T TENSOR REMARK 3 T11: 0.4170 T22: 0.2499 REMARK 3 T33: 0.3850 T12: 0.0667 REMARK 3 T13: -0.0119 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.1116 L22: 3.0231 REMARK 3 L33: 1.5702 L12: -0.0910 REMARK 3 L13: 0.0668 L23: 0.2707 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0303 S13: 0.0752 REMARK 3 S21: 0.0093 S22: -0.0883 S23: -0.2040 REMARK 3 S31: 0.0444 S32: 0.0387 S33: 0.0342 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 0 THROUGH 201) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5794 55.6667 23.8592 REMARK 3 T TENSOR REMARK 3 T11: 0.6000 T22: 0.6927 REMARK 3 T33: 0.7502 T12: -0.2529 REMARK 3 T13: -0.0311 T23: -0.1986 REMARK 3 L TENSOR REMARK 3 L11: 1.8037 L22: 1.7039 REMARK 3 L33: 1.6208 L12: 0.5497 REMARK 3 L13: -0.5795 L23: 0.1948 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.0698 S13: 0.0419 REMARK 3 S21: -0.2659 S22: -0.1583 S23: 0.7772 REMARK 3 S31: 0.5717 S32: -0.6858 S33: 0.1368 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 56.36 MM NAH2PO4, 1343 MM K2HPO4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.33333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.16667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.25000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.08333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 150.41667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 120.33333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 60.16667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.08333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.25000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 150.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 333 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 397 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 414 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 341 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 314 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 169 REMARK 465 LYS B 169 REMARK 465 LYS C 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 ASP B 33 CG OD1 OD2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS C 88 CG CD CE NZ REMARK 470 GLN C 129 CG CD OE1 NE2 REMARK 470 ARG C 135 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 167 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 33.94 72.22 REMARK 500 SER B 122 49.99 -94.07 REMARK 500 ARG C 149 -2.64 66.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 201 O2G 175.5 REMARK 620 3 GNP A 201 O1B 87.4 92.3 REMARK 620 4 HOH A 305 O 81.4 103.1 90.1 REMARK 620 5 HOH A 325 O 87.4 88.1 84.1 167.6 REMARK 620 6 HOH A 355 O 92.8 86.7 170.2 99.6 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GNP B 201 O2G 178.8 REMARK 620 3 GNP B 201 O1B 92.9 87.8 REMARK 620 4 HOH B 318 O 81.8 97.3 91.3 REMARK 620 5 HOH B 325 O 94.2 85.1 171.7 93.8 REMARK 620 6 HOH B 326 O 95.2 85.8 85.5 175.5 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 GNP C 201 O2G 174.9 REMARK 620 3 GNP C 201 O1B 94.8 90.2 REMARK 620 4 HOH C 304 O 100.4 79.6 98.3 REMARK 620 5 HOH C 312 O 83.1 96.3 87.5 172.8 REMARK 620 6 HOH C 325 O 99.9 75.2 163.9 72.7 100.6 REMARK 620 N 1 2 3 4 5 DBREF 8V39 A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 8V39 B 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 8V39 C 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 8V39 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 8V39 CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8V39 SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 8V39 GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 8V39 CYS B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8V39 SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 8V39 GLY C 0 UNP P01116 EXPRESSION TAG SEQADV 8V39 CYS C 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8V39 SER C 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS SEQRES 1 C 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 C 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 C 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 C 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 C 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 C 170 LYS HET GNP A 201 32 HET MG A 202 1 HET Y8N A 203 51 HET GNP B 201 32 HET MG B 202 1 HET Y8N B 203 51 HET GNP C 201 32 HET MG C 202 1 HET Y8N C 203 51 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM Y8N BBO-8520 (BOUND FORM) HETSYN Y8N (4P)-2-AMINO-4-{4-[(2S,5R)-2,5-DIMETHYL-4- HETSYN 2 Y8N PROPANOYLPIPERAZIN-1-YL]-8-FLUORO-2-{[(2R,4R,7AS)-2- HETSYN 3 Y8N FLUOROTETRAHYDRO-1H-PYRROLIZIN-7A(5H)-YL]METHOXY}-6- HETSYN 4 Y8N (TRIFLUOROMETHYL)QUINAZOLIN-7-YL}-7-FLUORO-1- HETSYN 5 Y8N BENZOTHIOPHENE-3-CARBONITRILE FORMUL 4 GNP 3(C10 H17 N6 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 6 Y8N 3(C35 H35 F6 N7 O2 S) FORMUL 13 HOH *303(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 SER B 65 THR B 74 1 10 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 167 1 17 HELIX 13 AB4 GLY C 15 ASN C 26 1 12 HELIX 14 AB5 SER C 65 THR C 74 1 10 HELIX 15 AB6 ASN C 86 ASP C 92 1 7 HELIX 16 AB7 ASP C 92 ASP C 105 1 14 HELIX 17 AB8 ASP C 126 GLY C 138 1 13 HELIX 18 AB9 GLY C 151 LYS C 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N TYR A 4 O LEU A 52 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O LEU B 53 N LYS B 42 SHEET 3 AA2 6 THR B 2 GLY B 10 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 6 ASP C 38 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O ILE C 55 N TYR C 40 SHEET 3 AA3 6 GLU C 3 VAL C 9 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O LEU C 79 N VAL C 9 SHEET 5 AA3 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 PHE C 141 GLU C 143 1 O ILE C 142 N LEU C 113 LINK SG CYS A 12 C31 Y8N A 203 1555 1555 1.81 LINK SG CYS B 12 C31 Y8N B 203 1555 1555 1.82 LINK SG CYS C 12 C31 Y8N C 203 1555 1555 1.81 LINK OG SER A 17 MG MG A 202 1555 1555 2.07 LINK O2G GNP A 201 MG MG A 202 1555 1555 1.92 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.13 LINK MG MG A 202 O HOH A 305 1555 1555 2.08 LINK MG MG A 202 O HOH A 325 1555 1555 2.24 LINK MG MG A 202 O HOH A 355 1555 1555 2.20 LINK OG SER B 17 MG MG B 202 1555 1555 2.03 LINK O2G GNP B 201 MG MG B 202 1555 1555 1.93 LINK O1B GNP B 201 MG MG B 202 1555 1555 2.09 LINK MG MG B 202 O HOH B 318 1555 1555 2.21 LINK MG MG B 202 O HOH B 325 1555 1555 2.06 LINK MG MG B 202 O HOH B 326 1555 1555 2.11 LINK OG SER C 17 MG MG C 202 1555 1555 1.94 LINK O2G GNP C 201 MG MG C 202 1555 1555 2.08 LINK O1B GNP C 201 MG MG C 202 1555 1555 2.14 LINK MG MG C 202 O HOH C 304 1555 1555 2.43 LINK MG MG C 202 O HOH C 312 1555 1555 2.05 LINK MG MG C 202 O HOH C 325 1555 1555 2.49 CRYST1 115.960 115.960 180.500 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008624 0.004979 0.000000 0.00000 SCALE2 0.000000 0.009958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005540 0.00000