HEADER VIRAL PROTEIN 27-NOV-23 8V3E TITLE STRUCTURE OF MYROIDES ODORATUS PHAGE TAD2 IN APO STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAD2; COMPND 3 CHAIN: E, F, A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYROIDES ODORATUS; SOURCE 3 ORGANISM_TAXID: 256; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIS-ADPR, PHAGE, ANTI-DEFENSE, SEQUESTRATION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LU,P.J.KRANZUSCH REVDAT 3 25-JUN-25 8V3E 1 JRNL REVDAT 2 04-JUN-25 8V3E 1 JRNL REVDAT 1 30-APR-25 8V3E 0 JRNL AUTH D.SABONIS,C.AVRAHAM,R.B.CHANG,A.LU,E.HERBST,A.SILANSKAS, JRNL AUTH 2 D.VILUTIS,A.LEAVITT,E.YIRMIYA,H.C.TOYODA,A.RUKSENAITE, JRNL AUTH 3 M.ZAREMBA,I.OSTERMAN,G.AMITAI,P.J.KRANZUSCH,R.SOREK, JRNL AUTH 4 G.TAMULAITIENE JRNL TITL TIR DOMAINS PRODUCE HISTIDINE-ADPR AS AN IMMUNE SIGNAL IN JRNL TITL 2 BACTERIA. JRNL REF NATURE V. 642 467 2025 JRNL REFN ESSN 1476-4687 JRNL PMID 40307559 JRNL DOI 10.1038/S41586-025-08930-2 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.3200 - 4.2200 0.99 1317 145 0.1939 0.2029 REMARK 3 2 4.2200 - 3.6900 0.99 1289 144 0.1966 0.2505 REMARK 3 3 3.6900 - 3.3500 1.00 1310 147 0.2212 0.2716 REMARK 3 4 3.3500 - 3.1100 1.00 1277 144 0.2384 0.3131 REMARK 3 5 3.1100 - 2.9300 1.00 1306 145 0.2317 0.2480 REMARK 3 6 2.9300 - 2.7800 1.00 1265 146 0.2370 0.3173 REMARK 3 7 2.7800 - 2.6600 1.00 1276 139 0.2473 0.2935 REMARK 3 8 2.6600 - 2.5600 1.00 1283 144 0.2475 0.3160 REMARK 3 9 2.5600 - 2.4700 1.00 1279 144 0.2493 0.2888 REMARK 3 10 2.4700 - 2.3900 0.96 1236 138 0.2663 0.3052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.289 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.083 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2589 REMARK 3 ANGLE : 0.432 3504 REMARK 3 CHIRALITY : 0.039 373 REMARK 3 PLANARITY : 0.003 440 REMARK 3 DIHEDRAL : 12.304 932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0923 5.4563 10.9596 REMARK 3 T TENSOR REMARK 3 T11: 0.2963 T22: 0.1803 REMARK 3 T33: 0.2246 T12: 0.0925 REMARK 3 T13: 0.1108 T23: 0.1449 REMARK 3 L TENSOR REMARK 3 L11: 0.1962 L22: 0.0765 REMARK 3 L33: 1.7343 L12: 0.0588 REMARK 3 L13: -0.0052 L23: 0.2843 REMARK 3 S TENSOR REMARK 3 S11: 0.2041 S12: 0.2232 S13: 0.1892 REMARK 3 S21: -0.0657 S22: -0.1029 S23: -0.1695 REMARK 3 S31: -0.4204 S32: 0.3945 S33: 0.0940 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0841 -5.5661 28.7356 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.1442 REMARK 3 T33: 0.1319 T12: 0.0368 REMARK 3 T13: 0.0100 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.7302 L22: 0.9402 REMARK 3 L33: 0.8442 L12: 0.2603 REMARK 3 L13: -0.0327 L23: 0.6614 REMARK 3 S TENSOR REMARK 3 S11: 0.1516 S12: -0.1798 S13: -0.1015 REMARK 3 S21: 0.1915 S22: -0.1935 S23: 0.0126 REMARK 3 S31: 0.2353 S32: 0.1762 S33: -0.0677 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 3 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1521 -24.4792 28.1199 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.0800 REMARK 3 T33: 0.1325 T12: 0.0250 REMARK 3 T13: 0.0386 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.4394 L22: 0.2662 REMARK 3 L33: 1.4321 L12: 0.3090 REMARK 3 L13: 0.5285 L23: 0.3319 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.1118 S13: -0.0181 REMARK 3 S21: 0.1908 S22: 0.1075 S23: -0.0225 REMARK 3 S31: 0.0556 S32: 0.2637 S33: -0.0087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 35 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5904 -33.5687 9.2574 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.4182 REMARK 3 T33: 0.1845 T12: -0.0003 REMARK 3 T13: -0.0070 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.4571 L22: 0.0543 REMARK 3 L33: 0.0601 L12: -0.0130 REMARK 3 L13: 0.1814 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: -0.0192 S13: -0.3407 REMARK 3 S21: 0.2671 S22: 0.0114 S23: 0.2222 REMARK 3 S31: 0.1462 S32: -0.3192 S33: 0.0061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 48 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8716 -29.6210 3.6676 REMARK 3 T TENSOR REMARK 3 T11: 0.6090 T22: 1.0462 REMARK 3 T33: 0.5204 T12: -0.1441 REMARK 3 T13: 0.0698 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 0.0108 L22: 0.0413 REMARK 3 L33: 0.0075 L12: -0.0190 REMARK 3 L13: 0.0077 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.0886 S13: -0.2243 REMARK 3 S21: -0.0109 S22: -0.0151 S23: -0.1024 REMARK 3 S31: 0.0613 S32: -0.2048 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 53 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0183 -29.9250 9.9867 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.2097 REMARK 3 T33: 0.1841 T12: 0.0918 REMARK 3 T13: -0.0456 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 1.3036 L22: 0.5987 REMARK 3 L33: 1.2863 L12: -0.2189 REMARK 3 L13: 0.0617 L23: -0.8602 REMARK 3 S TENSOR REMARK 3 S11: 0.2887 S12: 0.2140 S13: -0.0513 REMARK 3 S21: -0.1888 S22: 0.1654 S23: 0.1076 REMARK 3 S31: 0.0320 S32: -0.1534 S33: 0.5910 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 59 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7888 -21.2578 28.4207 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.1205 REMARK 3 T33: 0.1488 T12: 0.0080 REMARK 3 T13: -0.0447 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.9426 L22: 0.7132 REMARK 3 L33: 0.7548 L12: 0.2426 REMARK 3 L13: 0.1312 L23: -0.6506 REMARK 3 S TENSOR REMARK 3 S11: 0.1847 S12: -0.4007 S13: 0.2743 REMARK 3 S21: 0.3842 S22: -0.1159 S23: 0.2058 REMARK 3 S31: -0.2486 S32: -0.0457 S33: 0.1892 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 3 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4020 -16.4836 13.6842 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1990 REMARK 3 T33: 0.0895 T12: 0.0086 REMARK 3 T13: 0.0034 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 1.3919 L22: 0.5984 REMARK 3 L33: 0.6439 L12: 0.8198 REMARK 3 L13: 0.3916 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: 0.3956 S13: -0.4846 REMARK 3 S21: -0.3202 S22: 0.0328 S23: -0.4521 REMARK 3 S31: 0.1563 S32: 0.2434 S33: 0.1418 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 22 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5962 -10.8842 7.6569 REMARK 3 T TENSOR REMARK 3 T11: 0.1598 T22: 0.3249 REMARK 3 T33: 0.1945 T12: -0.0273 REMARK 3 T13: -0.0966 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.6602 L22: 1.2135 REMARK 3 L33: 0.6939 L12: 0.4626 REMARK 3 L13: 0.0213 L23: -0.7435 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: 0.5618 S13: -0.3480 REMARK 3 S21: -0.4387 S22: -0.0231 S23: -0.0442 REMARK 3 S31: 0.3636 S32: 0.2288 S33: -0.2029 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 35 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4661 1.3545 29.3342 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.3308 REMARK 3 T33: 0.2670 T12: -0.0368 REMARK 3 T13: -0.0289 T23: -0.1211 REMARK 3 L TENSOR REMARK 3 L11: 0.0088 L22: 0.4806 REMARK 3 L33: 0.3751 L12: -0.0386 REMARK 3 L13: 0.0354 L23: -0.1813 REMARK 3 S TENSOR REMARK 3 S11: -0.3106 S12: -0.2839 S13: 0.5535 REMARK 3 S21: -0.1396 S22: 0.1510 S23: 0.0693 REMARK 3 S31: -0.1776 S32: 0.2253 S33: -0.0973 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 59 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1813 -9.1932 12.2755 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2892 REMARK 3 T33: 0.1767 T12: 0.0250 REMARK 3 T13: -0.0413 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 0.0002 L22: 0.1301 REMARK 3 L33: 0.1181 L12: -0.0343 REMARK 3 L13: -0.0319 L23: 0.1268 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.2877 S13: 0.1624 REMARK 3 S21: -0.2309 S22: -0.1974 S23: 0.3534 REMARK 3 S31: -0.1393 S32: -0.2413 S33: -0.0684 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 81 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6225 -18.1253 7.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.3380 REMARK 3 T33: 0.2164 T12: 0.0646 REMARK 3 T13: 0.0771 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.0388 L22: 0.1779 REMARK 3 L33: 0.4242 L12: 0.0541 REMARK 3 L13: 0.1049 L23: 0.2831 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: 0.1239 S13: -0.0298 REMARK 3 S21: -0.2926 S22: 0.1324 S23: -0.3626 REMARK 3 S31: 0.0419 S32: 0.2068 S33: 0.0383 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3169 -10.3408 12.5844 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.1754 REMARK 3 T33: 0.0927 T12: 0.0724 REMARK 3 T13: -0.0703 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.9036 L22: 1.6036 REMARK 3 L33: 1.7481 L12: 1.6823 REMARK 3 L13: -0.7825 L23: -0.6115 REMARK 3 S TENSOR REMARK 3 S11: 0.2655 S12: 0.1834 S13: 0.4023 REMARK 3 S21: -0.1386 S22: -0.1767 S23: 0.6190 REMARK 3 S31: -0.1699 S32: -0.3182 S33: 0.3174 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6798 -18.2078 8.8945 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1119 REMARK 3 T33: -0.5158 T12: 0.0751 REMARK 3 T13: 0.1333 T23: -0.2751 REMARK 3 L TENSOR REMARK 3 L11: 0.4196 L22: -0.0100 REMARK 3 L33: 0.0528 L12: 0.0142 REMARK 3 L13: -0.0442 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: 0.1931 S12: -0.2409 S13: 0.0461 REMARK 3 S21: -0.0349 S22: -0.1234 S23: 0.1354 REMARK 3 S31: 0.0107 S32: -0.1334 S33: 0.4348 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3705 -33.4610 31.1888 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.1702 REMARK 3 T33: 0.2530 T12: -0.0283 REMARK 3 T13: -0.0315 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.2525 L22: 0.4559 REMARK 3 L33: 0.7921 L12: -0.0305 REMARK 3 L13: -0.3270 L23: -0.3999 REMARK 3 S TENSOR REMARK 3 S11: 0.3395 S12: 0.2362 S13: 0.0425 REMARK 3 S21: -0.1500 S22: -0.0753 S23: 0.2275 REMARK 3 S31: 0.2278 S32: -0.0249 S33: 0.1792 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0167 -14.9285 11.2221 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.2172 REMARK 3 T33: 0.0991 T12: 0.0525 REMARK 3 T13: -0.0409 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2946 L22: 0.7596 REMARK 3 L33: 0.4524 L12: -0.1044 REMARK 3 L13: 0.3138 L23: 0.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.1260 S12: 0.2073 S13: 0.1161 REMARK 3 S21: -0.6325 S22: -0.0073 S23: -0.0961 REMARK 3 S31: -0.0874 S32: 0.2046 S33: 0.1545 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5528 -2.0795 28.6006 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: -0.0760 REMARK 3 T33: 0.1815 T12: 0.0631 REMARK 3 T13: -0.0373 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.2942 L22: 1.6460 REMARK 3 L33: 1.1502 L12: 0.2524 REMARK 3 L13: 0.0308 L23: -0.6621 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.2508 S13: 0.2661 REMARK 3 S21: 0.4569 S22: -0.2045 S23: -0.1837 REMARK 3 S31: -0.4706 S32: -0.3379 S33: -0.8588 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 45.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, SODIUM ACETATE, REMARK 280 PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.60300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.90625 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 78.51633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.60300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.90625 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 78.51633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.60300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.90625 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.51633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.60300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.90625 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.51633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.60300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.90625 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.51633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.60300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.90625 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.51633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.81251 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 157.03267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.81251 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 157.03267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.81251 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 157.03267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.81251 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 157.03267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.81251 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 157.03267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.81251 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 157.03267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 133 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 MET F 1 REMARK 465 ASP F 2 REMARK 465 TYR F 39 REMARK 465 LYS F 40 REMARK 465 SER F 41 REMARK 465 GLN F 42 REMARK 465 THR F 43 REMARK 465 ASP F 44 REMARK 465 VAL F 45 REMARK 465 ILE F 46 REMARK 465 LYS F 47 REMARK 465 ASN F 48 REMARK 465 THR F 49 REMARK 465 PHE F 50 REMARK 465 GLY F 51 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 40 REMARK 465 SER B 41 REMARK 465 GLN B 42 REMARK 465 THR B 43 REMARK 465 ASP B 44 REMARK 465 VAL B 45 REMARK 465 ILE B 46 REMARK 465 LYS B 47 REMARK 465 ASN B 48 REMARK 465 THR B 49 REMARK 465 PHE B 50 REMARK 465 GLY B 51 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 136 O HOH F 150 1.86 REMARK 500 O HOH E 146 O HOH B 141 1.88 REMARK 500 O HOH A 149 O HOH B 138 1.96 REMARK 500 O HOH E 141 O HOH A 134 1.96 REMARK 500 O SER A 41 O HOH A 101 1.99 REMARK 500 O HOH A 103 O HOH B 106 2.02 REMARK 500 O HOH F 134 O HOH F 147 2.08 REMARK 500 O HOH A 147 O HOH A 151 2.09 REMARK 500 O HOH E 150 O HOH A 136 2.09 REMARK 500 O HOH A 120 O HOH A 139 2.10 REMARK 500 O HOH F 138 O HOH F 141 2.10 REMARK 500 O HOH E 133 O HOH E 145 2.11 REMARK 500 O HOH E 136 O HOH A 136 2.13 REMARK 500 OG1 THR A 64 OD1 ASP A 68 2.13 REMARK 500 O HOH F 138 O HOH F 152 2.16 REMARK 500 O HOH A 143 O HOH A 147 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE E 50 -65.79 -106.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 8V3E E 1 88 PDB 8V3E 8V3E 1 88 DBREF 8V3E F 1 88 PDB 8V3E 8V3E 1 88 DBREF 8V3E A 1 88 PDB 8V3E 8V3E 1 88 DBREF 8V3E B 1 88 PDB 8V3E 8V3E 1 88 SEQRES 1 E 88 MET ASP SER LEU ASN PHE GLY LYS ALA LEU GLU ALA LEU SEQRES 2 E 88 LYS GLU GLY LYS LYS VAL SER ARG GLU GLY TRP ASN GLY SEQRES 3 E 88 LYS GLY MET PHE ALA TYR TYR VAL PRO GLY GLY VAL TYR SEQRES 4 E 88 LYS SER GLN THR ASP VAL ILE LYS ASN THR PHE GLY GLU SEQRES 5 E 88 GLU VAL LYS TYR ARG PRO TYR LEU ALA LEU LYS THR VAL SEQRES 6 E 88 ASP ASN ASP ILE ALA THR TRP THR PRO SER VAL SER ASP SEQRES 7 E 88 ILE LEU ALA GLU ASP TRP ASN ILE VAL GLU SEQRES 1 F 88 MET ASP SER LEU ASN PHE GLY LYS ALA LEU GLU ALA LEU SEQRES 2 F 88 LYS GLU GLY LYS LYS VAL SER ARG GLU GLY TRP ASN GLY SEQRES 3 F 88 LYS GLY MET PHE ALA TYR TYR VAL PRO GLY GLY VAL TYR SEQRES 4 F 88 LYS SER GLN THR ASP VAL ILE LYS ASN THR PHE GLY GLU SEQRES 5 F 88 GLU VAL LYS TYR ARG PRO TYR LEU ALA LEU LYS THR VAL SEQRES 6 F 88 ASP ASN ASP ILE ALA THR TRP THR PRO SER VAL SER ASP SEQRES 7 F 88 ILE LEU ALA GLU ASP TRP ASN ILE VAL GLU SEQRES 1 A 88 MET ASP SER LEU ASN PHE GLY LYS ALA LEU GLU ALA LEU SEQRES 2 A 88 LYS GLU GLY LYS LYS VAL SER ARG GLU GLY TRP ASN GLY SEQRES 3 A 88 LYS GLY MET PHE ALA TYR TYR VAL PRO GLY GLY VAL TYR SEQRES 4 A 88 LYS SER GLN THR ASP VAL ILE LYS ASN THR PHE GLY GLU SEQRES 5 A 88 GLU VAL LYS TYR ARG PRO TYR LEU ALA LEU LYS THR VAL SEQRES 6 A 88 ASP ASN ASP ILE ALA THR TRP THR PRO SER VAL SER ASP SEQRES 7 A 88 ILE LEU ALA GLU ASP TRP ASN ILE VAL GLU SEQRES 1 B 88 MET ASP SER LEU ASN PHE GLY LYS ALA LEU GLU ALA LEU SEQRES 2 B 88 LYS GLU GLY LYS LYS VAL SER ARG GLU GLY TRP ASN GLY SEQRES 3 B 88 LYS GLY MET PHE ALA TYR TYR VAL PRO GLY GLY VAL TYR SEQRES 4 B 88 LYS SER GLN THR ASP VAL ILE LYS ASN THR PHE GLY GLU SEQRES 5 B 88 GLU VAL LYS TYR ARG PRO TYR LEU ALA LEU LYS THR VAL SEQRES 6 B 88 ASP ASN ASP ILE ALA THR TRP THR PRO SER VAL SER ASP SEQRES 7 B 88 ILE LEU ALA GLU ASP TRP ASN ILE VAL GLU FORMUL 5 HOH *206(H2 O) HELIX 1 AA1 ASN E 5 GLU E 15 1 11 HELIX 2 AA2 THR E 43 ASN E 48 1 6 HELIX 3 AA3 SER E 75 ALA E 81 1 7 HELIX 4 AA4 ASN F 5 GLU F 15 1 11 HELIX 5 AA5 SER F 75 ALA F 81 1 7 HELIX 6 AA6 ASN A 5 GLU A 15 1 11 HELIX 7 AA7 GLY A 23 ASN A 25 5 3 HELIX 8 AA8 THR A 43 ASN A 48 1 6 HELIX 9 AA9 SER A 75 ALA A 81 1 7 HELIX 10 AB1 ASN B 5 GLU B 15 1 11 HELIX 11 AB2 GLY B 23 ASN B 25 5 3 HELIX 12 AB3 SER B 75 ALA B 81 1 7 SHEET 1 AA1 2 LYS E 18 ARG E 21 0 SHEET 2 AA1 2 TRP E 84 VAL E 87 -1 O VAL E 87 N LYS E 18 SHEET 1 AA2 5 PHE E 30 VAL E 34 0 SHEET 2 AA2 5 TYR E 59 LYS E 63 -1 O TYR E 59 N VAL E 34 SHEET 3 AA2 5 ASP E 68 THR E 71 -1 O ALA E 70 N LEU E 62 SHEET 4 AA2 5 GLU A 53 TYR A 56 1 O LYS A 55 N ILE E 69 SHEET 5 AA2 5 GLY A 37 LYS A 40 -1 N GLY A 37 O TYR A 56 SHEET 1 AA3 5 GLY E 37 LYS E 40 0 SHEET 2 AA3 5 GLU E 53 TYR E 56 -1 O TYR E 56 N GLY E 37 SHEET 3 AA3 5 ASP A 68 TRP A 72 1 O ILE A 69 N LYS E 55 SHEET 4 AA3 5 TYR A 59 LYS A 63 -1 N LEU A 62 O ALA A 70 SHEET 5 AA3 5 PHE A 30 VAL A 34 -1 N TYR A 32 O ALA A 61 SHEET 1 AA4 2 LYS F 18 ARG F 21 0 SHEET 2 AA4 2 TRP F 84 VAL F 87 -1 O VAL F 87 N LYS F 18 SHEET 1 AA5 3 PHE F 30 VAL F 34 0 SHEET 2 AA5 3 TYR F 59 LYS F 63 -1 O LYS F 63 N PHE F 30 SHEET 3 AA5 3 ILE F 69 THR F 71 -1 O ALA F 70 N LEU F 62 SHEET 1 AA6 2 LYS A 18 ARG A 21 0 SHEET 2 AA6 2 TRP A 84 VAL A 87 -1 O VAL A 87 N LYS A 18 SHEET 1 AA7 2 LYS B 18 ARG B 21 0 SHEET 2 AA7 2 TRP B 84 VAL B 87 -1 O ASN B 85 N SER B 20 SHEET 1 AA8 3 PHE B 30 VAL B 34 0 SHEET 2 AA8 3 TYR B 59 LYS B 63 -1 O TYR B 59 N VAL B 34 SHEET 3 AA8 3 ILE B 69 THR B 71 -1 O ALA B 70 N LEU B 62 SHEET 1 AA9 2 GLY B 37 VAL B 38 0 SHEET 2 AA9 2 LYS B 55 TYR B 56 -1 O TYR B 56 N GLY B 37 CRYST1 93.206 93.206 235.549 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010729 0.006194 0.000000 0.00000 SCALE2 0.000000 0.012389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004245 0.00000 MASTER 603 0 0 12 26 0 0 6 2736 4 0 28 END