HEADER HYDROLASE/INHIBITOR 28-NOV-23 8V3O
TITLE CCP5 IN COMPLEX WITH GLU-P-PEPTIDE 1 TRANSITION STATE ANALOG
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOSOLIC CARBOXYPEPTIDASE-LIKE PROTEIN 5;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ATP/GTP-BINDING PROTEIN-LIKE 5,PROTEIN DEGLUTAMYLASE CCP5;
COMPND 5 EC: 3.4.17.-,3.4.17.24;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: TUBULIN BETA-2A CHAIN;
COMPND 10 CHAIN: I;
COMPND 11 SYNONYM: TUBULIN BETA CLASS IIA;
COMPND 12 ENGINEERED: YES;
COMPND 13 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: AGBL5, CCP5;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: IPLB-SF-21-AE;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9;
SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC;
SOURCE 12 MOL_ID: 2;
SOURCE 13 SYNTHETIC: YES;
SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 15 ORGANISM_COMMON: HUMAN;
SOURCE 16 ORGANISM_TAXID: 9606
KEYWDS CARBOXYPEPTIDASE DEGLUTAMYLATION BRANCH GLUTAMATE REMOVAL
KEYWDS 2 MICROTUBULE, HYDROLASE, HYDROLASE-INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.CHEN,E.A.ZEHR,J.M.GRUSCHUS,A.SZYK,Y.LIU,M.E.TANNER,N.TJANDRA,
AUTHOR 2 A.ROLL-MECAK
REVDAT 4 30-OCT-24 8V3O 1 LINK
REVDAT 3 07-AUG-24 8V3O 1 JRNL
REVDAT 2 31-JUL-24 8V3O 1 JRNL
REVDAT 1 17-JUL-24 8V3O 0
JRNL AUTH J.CHEN,E.A.ZEHR,J.M.GRUSCHUS,A.SZYK,Y.LIU,M.E.TANNER,
JRNL AUTH 2 N.TJANDRA,A.ROLL-MECAK
JRNL TITL TUBULIN CODE ERASER CCP5 BINDS BRANCH GLUTAMATES BY
JRNL TITL 2 SUBSTRATE DEFORMATION.
JRNL REF NATURE V. 631 905 2024
JRNL REFN ESSN 1476-4687
JRNL PMID 39020174
JRNL DOI 10.1038/S41586-024-07699-0
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20.1_4487
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.55
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 25340
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.204
REMARK 3 R VALUE (WORKING SET) : 0.203
REMARK 3 FREE R VALUE : 0.227
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680
REMARK 3 FREE R VALUE TEST SET COUNT : 1187
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 34.5500 - 4.6000 1.00 3179 174 0.1732 0.2120
REMARK 3 2 4.6000 - 3.6500 1.00 3022 169 0.1704 0.1932
REMARK 3 3 3.6500 - 3.1900 1.00 3026 144 0.2010 0.2115
REMARK 3 4 3.1900 - 2.9000 1.00 3016 121 0.2308 0.2513
REMARK 3 5 2.9000 - 2.6900 1.00 2982 148 0.2402 0.2354
REMARK 3 6 2.6900 - 2.5300 1.00 2965 157 0.2569 0.2993
REMARK 3 7 2.5300 - 2.4000 1.00 2970 140 0.2579 0.3159
REMARK 3 8 2.4000 - 2.3000 1.00 2993 134 0.2642 0.2890
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.910
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 NULL
REMARK 3 ANGLE : 0.642 NULL
REMARK 3 CHIRALITY : 0.040 NULL
REMARK 3 PLANARITY : 0.005 NULL
REMARK 3 DIHEDRAL : 10.252 NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8V3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-23.
REMARK 100 THE DEPOSITION ID IS D_1000279463.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-MAY-22
REMARK 200 TEMPERATURE (KELVIN) : 93
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 8.2.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25384
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 34.550
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 14.30
REMARK 200 R MERGE (I) : 0.17500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 14.70
REMARK 200 R MERGE FOR SHELL (I) : 1.45500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.49
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M DL-MALIC ACID, PH7.0, 0.1 M
REMARK 280 IMIDAZOLE, PH7.0, 16% PEG MME 550, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 294K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 X,-Y,-Z
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 -X,-Y+1/2,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.68600
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.68600
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASN A 1
REMARK 465 SER A 29
REMARK 465 SER A 30
REMARK 465 ASP A 31
REMARK 465 GLY A 32
REMARK 465 GLU A 33
REMARK 465 GLY A 34
REMARK 465 VAL A 35
REMARK 465 GLY A 36
REMARK 465 GLY A 37
REMARK 465 GLY A 38
REMARK 465 ALA A 39
REMARK 465 SER A 40
REMARK 465 ALA A 41
REMARK 465 LEU A 42
REMARK 465 THR A 43
REMARK 465 SER A 44
REMARK 465 GLY A 45
REMARK 465 ILE A 46
REMARK 465 ALA A 47
REMARK 465 GLY A 423
REMARK 465 ARG A 523
REMARK 465 SER A 524
REMARK 465 VAL A 525
REMARK 465 ASN A 526
REMARK 465 SER A 527
REMARK 465 ILE A 528
REMARK 465 PRO A 529
REMARK 465 ALA A 530
REMARK 465 ALA A 531
REMARK 465 CYS A 532
REMARK 465 HIS A 533
REMARK 465 ASP A 534
REMARK 465 ASN A 535
REMARK 465 GLY A 536
REMARK 465 ARG A 537
REMARK 465 ALA A 538
REMARK 465 SER A 539
REMARK 465 PRO A 540
REMARK 465 PRO A 541
REMARK 465 PRO A 542
REMARK 465 PRO A 543
REMARK 465 PRO A 544
REMARK 465 ALA A 545
REMARK 465 PHE A 546
REMARK 465 PRO A 547
REMARK 465 SER A 548
REMARK 465 ARG A 549
REMARK 465 TYR A 550
REMARK 465 GLY A 602
REMARK 465 LEU A 603
REMARK 465 SER A 604
REMARK 465 SER A 605
REMARK 465 ASP I 1
REMARK 465 GLU I 2
REMARK 465 GLN I 3
REMARK 465 GLY I 4
REMARK 465 GLU I 5
REMARK 465 PHE I 6
REMARK 465 GLU I 7
REMARK 465 GLU I 8
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 26 CG CD OE1 OE2
REMARK 470 SER A 27 OG
REMARK 470 SER A 49 OG
REMARK 470 LYS A 97 CD CE NZ
REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 129 CG CD OE1 OE2
REMARK 470 GLU A 132 CG CD OE1 OE2
REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 166 CG CD OE1 OE2
REMARK 470 THR A 181 OG1 CG2
REMARK 470 GLU A 218 CG CD OE1 OE2
REMARK 470 GLU A 225 CG CD OE1 OE2
REMARK 470 ASP A 267 CG OD1 OD2
REMARK 470 LYS A 317 CG CD CE NZ
REMARK 470 SER A 341 OG
REMARK 470 ARG A 440 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 482 CG CD CE NZ
REMARK 470 ASP A 488 CG OD1 OD2
REMARK 470 ARG A 489 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2
REMARK 470 ASP A 491 CG OD1 OD2
REMARK 470 GLN A 493 CG CD OE1 NE2
REMARK 470 ILE A 578 CG1 CG2 CD1
REMARK 470 VAL A 579 CG1 CG2
REMARK 470 SER A 581 OG
REMARK 470 GLU A 582 CG CD OE1 OE2
REMARK 470 HIS A 583 CG ND1 CD2 CE1 NE2
REMARK 470 SER A 584 OG
REMARK 470 GLU I 14 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 BIX I 10 C - N - CA ANGL. DEV. = 26.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 49 109.91 -50.23
REMARK 500 ARG A 72 27.58 -145.67
REMARK 500 TYR A 76 110.69 -160.43
REMARK 500 ARG A 490 -25.47 70.44
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 GLU I 9 BIX I 10 -82.84
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 933 DISTANCE = 6.16 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 701 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 252 ND1
REMARK 620 2 GLU A 255 OE1 108.0
REMARK 620 3 GLU A 255 OE2 81.9 58.0
REMARK 620 4 HIS A 434 ND1 102.0 102.7 160.2
REMARK 620 5 BIX I 10 O6 134.7 109.2 96.7 94.2
REMARK 620 N 1 2 3 4
DBREF 8V3O A 2 338 UNP Q8NDL9 CBPC5_HUMAN 2 338
DBREF 8V3O A 425 605 UNP Q8NDL9 CBPC5_HUMAN 425 605
DBREF 8V3O I 1 15 UNP Q13885 TBB2A_HUMAN 431 445
SEQADV 8V3O ASN A 1 UNP Q8NDL9 EXPRESSION TAG
SEQADV 8V3O SER A 339 UNP Q8NDL9 LINKER
SEQADV 8V3O GLY A 340 UNP Q8NDL9 LINKER
SEQADV 8V3O SER A 341 UNP Q8NDL9 LINKER
SEQADV 8V3O GLY A 423 UNP Q8NDL9 LINKER
SEQADV 8V3O GLY A 424 UNP Q8NDL9 LINKER
SEQADV 8V3O ALA A 516 UNP Q8NDL9 GLU 516 ENGINEERED MUTATION
SEQADV 8V3O BIX I 10 UNP Q13885 GLU 440 ENGINEERED MUTATION
SEQRES 1 A 524 ASN GLU LEU ARG CYS GLY GLY LEU LEU PHE SER SER ARG
SEQRES 2 A 524 PHE ASP SER GLY ASN LEU ALA HIS VAL GLU LYS VAL GLU
SEQRES 3 A 524 SER LEU SER SER ASP GLY GLU GLY VAL GLY GLY GLY ALA
SEQRES 4 A 524 SER ALA LEU THR SER GLY ILE ALA SER SER PRO ASP TYR
SEQRES 5 A 524 GLU PHE ASN VAL TRP THR ARG PRO ASP CYS ALA GLU THR
SEQRES 6 A 524 GLU PHE GLU ASN GLY ASN ARG SER TRP PHE TYR PHE SER
SEQRES 7 A 524 VAL ARG GLY GLY MET PRO GLY LYS LEU ILE LYS ILE ASN
SEQRES 8 A 524 ILE MET ASN MET ASN LYS GLN SER LYS LEU TYR SER GLN
SEQRES 9 A 524 GLY MET ALA PRO PHE VAL ARG THR LEU PRO THR ARG PRO
SEQRES 10 A 524 ARG TRP GLU ARG ILE ARG ASP ARG PRO THR PHE GLU MET
SEQRES 11 A 524 THR GLU THR GLN PHE VAL LEU SER PHE VAL HIS ARG PHE
SEQRES 12 A 524 VAL GLU GLY ARG GLY ALA THR THR PHE PHE ALA PHE CYS
SEQRES 13 A 524 TYR PRO PHE SER TYR SER ASP CYS GLN GLU LEU LEU ASN
SEQRES 14 A 524 GLN LEU ASP GLN ARG PHE PRO GLU ASN HIS PRO THR HIS
SEQRES 15 A 524 SER SER PRO LEU ASP THR ILE TYR TYR HIS ARG GLU LEU
SEQRES 16 A 524 LEU CYS TYR SER LEU ASP GLY LEU ARG VAL ASP LEU LEU
SEQRES 17 A 524 THR ILE THR SER CYS HIS GLY LEU ARG GLU ASP ARG GLU
SEQRES 18 A 524 PRO ARG LEU GLU GLN LEU PHE PRO ASP THR SER THR PRO
SEQRES 19 A 524 ARG PRO PHE ARG PHE ALA GLY LYS ARG ILE PHE PHE LEU
SEQRES 20 A 524 SER SER ARG VAL HIS PRO GLY GLU THR PRO SER SER PHE
SEQRES 21 A 524 VAL PHE ASN GLY PHE LEU ASP PHE ILE LEU ARG PRO ASP
SEQRES 22 A 524 ASP PRO ARG ALA GLN THR LEU ARG ARG LEU PHE VAL PHE
SEQRES 23 A 524 LYS LEU ILE PRO MET LEU ASN PRO ASP GLY VAL VAL ARG
SEQRES 24 A 524 GLY HIS TYR ARG THR ASP SER ARG GLY VAL ASN LEU ASN
SEQRES 25 A 524 ARG GLN TYR LEU LYS PRO ASP ALA VAL LEU HIS PRO ALA
SEQRES 26 A 524 ILE TYR GLY ALA LYS ALA VAL LEU LEU TYR HIS HIS VAL
SEQRES 27 A 524 SER GLY SER GLY GLY SER GLY VAL ALA TYR TYR VAL ASP
SEQRES 28 A 524 LEU HIS GLY HIS ALA SER LYS ARG GLY CYS PHE MET TYR
SEQRES 29 A 524 GLY ASN SER PHE SER ASP GLU SER THR GLN VAL GLU ASN
SEQRES 30 A 524 MET LEU TYR PRO LYS LEU ILE SER LEU ASN SER ALA HIS
SEQRES 31 A 524 PHE ASP PHE GLN GLY CYS ASN PHE SER GLU LYS ASN MET
SEQRES 32 A 524 TYR ALA ARG ASP ARG ARG ASP GLY GLN SER LYS GLU GLY
SEQRES 33 A 524 SER GLY ARG VAL ALA ILE TYR LYS ALA SER GLY ILE ILE
SEQRES 34 A 524 HIS SER TYR THR LEU ALA CYS ASN TYR ASN THR GLY ARG
SEQRES 35 A 524 SER VAL ASN SER ILE PRO ALA ALA CYS HIS ASP ASN GLY
SEQRES 36 A 524 ARG ALA SER PRO PRO PRO PRO PRO ALA PHE PRO SER ARG
SEQRES 37 A 524 TYR THR VAL GLU LEU PHE GLU GLN VAL GLY ARG ALA MET
SEQRES 38 A 524 ALA ILE ALA ALA LEU ASP MET ALA GLU CYS ASN PRO TRP
SEQRES 39 A 524 PRO ARG ILE VAL LEU SER GLU HIS SER SER LEU THR ASN
SEQRES 40 A 524 LEU ARG ALA TRP MET LEU LYS HIS VAL ARG ASN SER ARG
SEQRES 41 A 524 GLY LEU SER SER
SEQRES 1 I 15 ASP GLU GLN GLY GLU PHE GLU GLU GLU BIX GLY GLU ASP
SEQRES 2 I 15 GLU ALA
HET BIX I 10 19
HET ZN A 701 1
HET MLT A 702 9
HET MLT A 703 9
HET K A 704 1
HETNAM BIX (2S)-2-{[(S)-[(3S)-3-AMINO-3-CARBOXYPROPYL](HYDROXY)
HETNAM 2 BIX PHOSPHORYL]METHYL}PENTANEDIOIC ACID
HETNAM ZN ZINC ION
HETNAM MLT D-MALATE
HETNAM K POTASSIUM ION
HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID
FORMUL 2 BIX C10 H18 N O8 P
FORMUL 3 ZN ZN 2+
FORMUL 4 MLT 2(C4 H6 O5)
FORMUL 6 K K 1+
FORMUL 7 HOH *139(H2 O)
HELIX 1 AA1 GLN A 98 GLN A 104 1 7
HELIX 2 AA2 SER A 160 PHE A 175 1 16
HELIX 3 AA3 SER A 184 ASP A 187 5 4
HELIX 4 AA4 GLU A 255 LEU A 270 1 16
HELIX 5 AA5 ASP A 274 LEU A 283 1 10
HELIX 6 AA6 ASN A 293 ARG A 299 1 7
HELIX 7 AA7 ASN A 310 GLN A 314 5 5
HELIX 8 AA8 HIS A 323 SER A 339 1 17
HELIX 9 AA9 ASP A 451 SER A 469 1 19
HELIX 10 AB1 ASP A 473 CYS A 477 5 5
HELIX 11 AB2 GLU A 481 TYR A 485 5 5
HELIX 12 AB3 SER A 494 GLY A 497 5 4
HELIX 13 AB4 SER A 498 GLY A 508 1 11
HELIX 14 AB5 VAL A 552 ALA A 570 1 19
HELIX 15 AB6 ARG A 577 SER A 581 5 5
HELIX 16 AB7 SER A 584 ASN A 599 1 16
SHEET 1 AA1 6 LEU A 3 CYS A 5 0
SHEET 2 AA1 6 LEU A 8 SER A 11 -1 O LEU A 8 N CYS A 5
SHEET 3 AA1 6 TYR A 76 ARG A 80 -1 O SER A 78 N SER A 11
SHEET 4 AA1 6 THR A 150 ALA A 154 -1 O THR A 151 N VAL A 79
SHEET 5 AA1 6 PHE A 109 LEU A 113 -1 N PHE A 109 O ALA A 154
SHEET 6 AA1 6 ARG A 116 ARG A 121 -1 O GLU A 120 N VAL A 110
SHEET 1 AA2 5 HIS A 21 GLU A 26 0
SHEET 2 AA2 5 TYR A 52 TRP A 57 -1 O GLU A 53 N GLU A 26
SHEET 3 AA2 5 LEU A 87 ILE A 92 1 O ASN A 91 N VAL A 56
SHEET 4 AA2 5 PHE A 135 ARG A 142 -1 O HIS A 141 N ILE A 88
SHEET 5 AA2 5 THR A 127 MET A 130 -1 N THR A 127 O SER A 138
SHEET 1 AA3 7 ILE A 189 TYR A 198 0
SHEET 2 AA3 7 ARG A 204 SER A 212 -1 O THR A 211 N TYR A 190
SHEET 3 AA3 7 PHE A 284 ILE A 289 -1 O PHE A 286 N ILE A 210
SHEET 4 AA3 7 ARG A 243 SER A 248 1 N ARG A 243 O VAL A 285
SHEET 5 AA3 7 VAL A 427 HIS A 436 1 O ALA A 428 N ILE A 244
SHEET 6 AA3 7 SER A 512 ASN A 518 1 O LEU A 515 N ASP A 432
SHEET 7 AA3 7 CYS A 442 GLY A 446 -1 N TYR A 445 O THR A 514
SHEET 1 AA4 2 LEU A 216 ARG A 220 0
SHEET 2 AA4 2 PHE A 237 PHE A 239 -1 O ARG A 238 N ASP A 219
SSBOND 1 CYS A 442 CYS A 517 1555 1555 2.04
LINK C GLU I 9 N BIX I 10 1555 1555 1.33
LINK C3 BIX I 10 N GLY I 11 1555 1555 1.33
LINK ND1 HIS A 252 ZN ZN A 701 1555 1555 2.30
LINK OE1 GLU A 255 ZN ZN A 701 1555 1555 2.00
LINK OE2 GLU A 255 ZN ZN A 701 1555 1555 2.46
LINK ND1 HIS A 434 ZN ZN A 701 1555 1555 2.29
LINK ZN ZN A 701 O6 BIX I 10 1555 1555 2.01
CISPEP 1 LEU A 113 PRO A 114 0 1.58
CISPEP 2 PHE A 175 PRO A 176 0 8.82
CRYST1 65.429 81.372 104.000 90.00 90.00 90.00 P 2 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015284 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012289 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009615 0.00000