HEADER HYDROLASE/INHIBITOR 28-NOV-23 8V3O TITLE CCP5 IN COMPLEX WITH GLU-P-PEPTIDE 1 TRANSITION STATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC CARBOXYPEPTIDASE-LIKE PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP/GTP-BINDING PROTEIN-LIKE 5,PROTEIN DEGLUTAMYLASE CCP5; COMPND 5 EC: 3.4.17.-,3.4.17.24; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TUBULIN BETA-2A CHAIN; COMPND 10 CHAIN: I; COMPND 11 SYNONYM: TUBULIN BETA CLASS IIA; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGBL5, CCP5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: IPLB-SF-21-AE; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS CARBOXYPEPTIDASE DEGLUTAMYLATION BRANCH GLUTAMATE REMOVAL KEYWDS 2 MICROTUBULE, HYDROLASE, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.CHEN,E.A.ZEHR,J.M.GRUSCHUS,A.SZYK,Y.LIU,M.E.TANNER,N.TJANDRA, AUTHOR 2 A.ROLL-MECAK REVDAT 4 30-OCT-24 8V3O 1 LINK REVDAT 3 07-AUG-24 8V3O 1 JRNL REVDAT 2 31-JUL-24 8V3O 1 JRNL REVDAT 1 17-JUL-24 8V3O 0 JRNL AUTH J.CHEN,E.A.ZEHR,J.M.GRUSCHUS,A.SZYK,Y.LIU,M.E.TANNER, JRNL AUTH 2 N.TJANDRA,A.ROLL-MECAK JRNL TITL TUBULIN CODE ERASER CCP5 BINDS BRANCH GLUTAMATES BY JRNL TITL 2 SUBSTRATE DEFORMATION. JRNL REF NATURE V. 631 905 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 39020174 JRNL DOI 10.1038/S41586-024-07699-0 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5500 - 4.6000 1.00 3179 174 0.1732 0.2120 REMARK 3 2 4.6000 - 3.6500 1.00 3022 169 0.1704 0.1932 REMARK 3 3 3.6500 - 3.1900 1.00 3026 144 0.2010 0.2115 REMARK 3 4 3.1900 - 2.9000 1.00 3016 121 0.2308 0.2513 REMARK 3 5 2.9000 - 2.6900 1.00 2982 148 0.2402 0.2354 REMARK 3 6 2.6900 - 2.5300 1.00 2965 157 0.2569 0.2993 REMARK 3 7 2.5300 - 2.4000 1.00 2970 140 0.2579 0.3159 REMARK 3 8 2.4000 - 2.3000 1.00 2993 134 0.2642 0.2890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 NULL REMARK 3 ANGLE : 0.642 NULL REMARK 3 CHIRALITY : 0.040 NULL REMARK 3 PLANARITY : 0.005 NULL REMARK 3 DIHEDRAL : 10.252 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25384 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 34.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 1.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M DL-MALIC ACID, PH7.0, 0.1 M REMARK 280 IMIDAZOLE, PH7.0, 16% PEG MME 550, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.68600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.68600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ASP A 31 REMARK 465 GLY A 32 REMARK 465 GLU A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 GLY A 36 REMARK 465 GLY A 37 REMARK 465 GLY A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 LEU A 42 REMARK 465 THR A 43 REMARK 465 SER A 44 REMARK 465 GLY A 45 REMARK 465 ILE A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 423 REMARK 465 ARG A 523 REMARK 465 SER A 524 REMARK 465 VAL A 525 REMARK 465 ASN A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 PRO A 529 REMARK 465 ALA A 530 REMARK 465 ALA A 531 REMARK 465 CYS A 532 REMARK 465 HIS A 533 REMARK 465 ASP A 534 REMARK 465 ASN A 535 REMARK 465 GLY A 536 REMARK 465 ARG A 537 REMARK 465 ALA A 538 REMARK 465 SER A 539 REMARK 465 PRO A 540 REMARK 465 PRO A 541 REMARK 465 PRO A 542 REMARK 465 PRO A 543 REMARK 465 PRO A 544 REMARK 465 ALA A 545 REMARK 465 PHE A 546 REMARK 465 PRO A 547 REMARK 465 SER A 548 REMARK 465 ARG A 549 REMARK 465 TYR A 550 REMARK 465 GLY A 602 REMARK 465 LEU A 603 REMARK 465 SER A 604 REMARK 465 SER A 605 REMARK 465 ASP I 1 REMARK 465 GLU I 2 REMARK 465 GLN I 3 REMARK 465 GLY I 4 REMARK 465 GLU I 5 REMARK 465 PHE I 6 REMARK 465 GLU I 7 REMARK 465 GLU I 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 SER A 27 OG REMARK 470 SER A 49 OG REMARK 470 LYS A 97 CD CE NZ REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 THR A 181 OG1 CG2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 ASP A 267 CG OD1 OD2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 SER A 341 OG REMARK 470 ARG A 440 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 ASP A 488 CG OD1 OD2 REMARK 470 ARG A 489 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 491 CG OD1 OD2 REMARK 470 GLN A 493 CG CD OE1 NE2 REMARK 470 ILE A 578 CG1 CG2 CD1 REMARK 470 VAL A 579 CG1 CG2 REMARK 470 SER A 581 OG REMARK 470 GLU A 582 CG CD OE1 OE2 REMARK 470 HIS A 583 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 584 OG REMARK 470 GLU I 14 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 BIX I 10 C - N - CA ANGL. DEV. = 26.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 109.91 -50.23 REMARK 500 ARG A 72 27.58 -145.67 REMARK 500 TYR A 76 110.69 -160.43 REMARK 500 ARG A 490 -25.47 70.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU I 9 BIX I 10 -82.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 933 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 252 ND1 REMARK 620 2 GLU A 255 OE1 108.0 REMARK 620 3 GLU A 255 OE2 81.9 58.0 REMARK 620 4 HIS A 434 ND1 102.0 102.7 160.2 REMARK 620 5 BIX I 10 O6 134.7 109.2 96.7 94.2 REMARK 620 N 1 2 3 4 DBREF 8V3O A 2 338 UNP Q8NDL9 CBPC5_HUMAN 2 338 DBREF 8V3O A 425 605 UNP Q8NDL9 CBPC5_HUMAN 425 605 DBREF 8V3O I 1 15 UNP Q13885 TBB2A_HUMAN 431 445 SEQADV 8V3O ASN A 1 UNP Q8NDL9 EXPRESSION TAG SEQADV 8V3O SER A 339 UNP Q8NDL9 LINKER SEQADV 8V3O GLY A 340 UNP Q8NDL9 LINKER SEQADV 8V3O SER A 341 UNP Q8NDL9 LINKER SEQADV 8V3O GLY A 423 UNP Q8NDL9 LINKER SEQADV 8V3O GLY A 424 UNP Q8NDL9 LINKER SEQADV 8V3O ALA A 516 UNP Q8NDL9 GLU 516 ENGINEERED MUTATION SEQADV 8V3O BIX I 10 UNP Q13885 GLU 440 ENGINEERED MUTATION SEQRES 1 A 524 ASN GLU LEU ARG CYS GLY GLY LEU LEU PHE SER SER ARG SEQRES 2 A 524 PHE ASP SER GLY ASN LEU ALA HIS VAL GLU LYS VAL GLU SEQRES 3 A 524 SER LEU SER SER ASP GLY GLU GLY VAL GLY GLY GLY ALA SEQRES 4 A 524 SER ALA LEU THR SER GLY ILE ALA SER SER PRO ASP TYR SEQRES 5 A 524 GLU PHE ASN VAL TRP THR ARG PRO ASP CYS ALA GLU THR SEQRES 6 A 524 GLU PHE GLU ASN GLY ASN ARG SER TRP PHE TYR PHE SER SEQRES 7 A 524 VAL ARG GLY GLY MET PRO GLY LYS LEU ILE LYS ILE ASN SEQRES 8 A 524 ILE MET ASN MET ASN LYS GLN SER LYS LEU TYR SER GLN SEQRES 9 A 524 GLY MET ALA PRO PHE VAL ARG THR LEU PRO THR ARG PRO SEQRES 10 A 524 ARG TRP GLU ARG ILE ARG ASP ARG PRO THR PHE GLU MET SEQRES 11 A 524 THR GLU THR GLN PHE VAL LEU SER PHE VAL HIS ARG PHE SEQRES 12 A 524 VAL GLU GLY ARG GLY ALA THR THR PHE PHE ALA PHE CYS SEQRES 13 A 524 TYR PRO PHE SER TYR SER ASP CYS GLN GLU LEU LEU ASN SEQRES 14 A 524 GLN LEU ASP GLN ARG PHE PRO GLU ASN HIS PRO THR HIS SEQRES 15 A 524 SER SER PRO LEU ASP THR ILE TYR TYR HIS ARG GLU LEU SEQRES 16 A 524 LEU CYS TYR SER LEU ASP GLY LEU ARG VAL ASP LEU LEU SEQRES 17 A 524 THR ILE THR SER CYS HIS GLY LEU ARG GLU ASP ARG GLU SEQRES 18 A 524 PRO ARG LEU GLU GLN LEU PHE PRO ASP THR SER THR PRO SEQRES 19 A 524 ARG PRO PHE ARG PHE ALA GLY LYS ARG ILE PHE PHE LEU SEQRES 20 A 524 SER SER ARG VAL HIS PRO GLY GLU THR PRO SER SER PHE SEQRES 21 A 524 VAL PHE ASN GLY PHE LEU ASP PHE ILE LEU ARG PRO ASP SEQRES 22 A 524 ASP PRO ARG ALA GLN THR LEU ARG ARG LEU PHE VAL PHE SEQRES 23 A 524 LYS LEU ILE PRO MET LEU ASN PRO ASP GLY VAL VAL ARG SEQRES 24 A 524 GLY HIS TYR ARG THR ASP SER ARG GLY VAL ASN LEU ASN SEQRES 25 A 524 ARG GLN TYR LEU LYS PRO ASP ALA VAL LEU HIS PRO ALA SEQRES 26 A 524 ILE TYR GLY ALA LYS ALA VAL LEU LEU TYR HIS HIS VAL SEQRES 27 A 524 SER GLY SER GLY GLY SER GLY VAL ALA TYR TYR VAL ASP SEQRES 28 A 524 LEU HIS GLY HIS ALA SER LYS ARG GLY CYS PHE MET TYR SEQRES 29 A 524 GLY ASN SER PHE SER ASP GLU SER THR GLN VAL GLU ASN SEQRES 30 A 524 MET LEU TYR PRO LYS LEU ILE SER LEU ASN SER ALA HIS SEQRES 31 A 524 PHE ASP PHE GLN GLY CYS ASN PHE SER GLU LYS ASN MET SEQRES 32 A 524 TYR ALA ARG ASP ARG ARG ASP GLY GLN SER LYS GLU GLY SEQRES 33 A 524 SER GLY ARG VAL ALA ILE TYR LYS ALA SER GLY ILE ILE SEQRES 34 A 524 HIS SER TYR THR LEU ALA CYS ASN TYR ASN THR GLY ARG SEQRES 35 A 524 SER VAL ASN SER ILE PRO ALA ALA CYS HIS ASP ASN GLY SEQRES 36 A 524 ARG ALA SER PRO PRO PRO PRO PRO ALA PHE PRO SER ARG SEQRES 37 A 524 TYR THR VAL GLU LEU PHE GLU GLN VAL GLY ARG ALA MET SEQRES 38 A 524 ALA ILE ALA ALA LEU ASP MET ALA GLU CYS ASN PRO TRP SEQRES 39 A 524 PRO ARG ILE VAL LEU SER GLU HIS SER SER LEU THR ASN SEQRES 40 A 524 LEU ARG ALA TRP MET LEU LYS HIS VAL ARG ASN SER ARG SEQRES 41 A 524 GLY LEU SER SER SEQRES 1 I 15 ASP GLU GLN GLY GLU PHE GLU GLU GLU BIX GLY GLU ASP SEQRES 2 I 15 GLU ALA HET BIX I 10 19 HET ZN A 701 1 HET MLT A 702 9 HET MLT A 703 9 HET K A 704 1 HETNAM BIX (2S)-2-{[(S)-[(3S)-3-AMINO-3-CARBOXYPROPYL](HYDROXY) HETNAM 2 BIX PHOSPHORYL]METHYL}PENTANEDIOIC ACID HETNAM ZN ZINC ION HETNAM MLT D-MALATE HETNAM K POTASSIUM ION HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 2 BIX C10 H18 N O8 P FORMUL 3 ZN ZN 2+ FORMUL 4 MLT 2(C4 H6 O5) FORMUL 6 K K 1+ FORMUL 7 HOH *139(H2 O) HELIX 1 AA1 GLN A 98 GLN A 104 1 7 HELIX 2 AA2 SER A 160 PHE A 175 1 16 HELIX 3 AA3 SER A 184 ASP A 187 5 4 HELIX 4 AA4 GLU A 255 LEU A 270 1 16 HELIX 5 AA5 ASP A 274 LEU A 283 1 10 HELIX 6 AA6 ASN A 293 ARG A 299 1 7 HELIX 7 AA7 ASN A 310 GLN A 314 5 5 HELIX 8 AA8 HIS A 323 SER A 339 1 17 HELIX 9 AA9 ASP A 451 SER A 469 1 19 HELIX 10 AB1 ASP A 473 CYS A 477 5 5 HELIX 11 AB2 GLU A 481 TYR A 485 5 5 HELIX 12 AB3 SER A 494 GLY A 497 5 4 HELIX 13 AB4 SER A 498 GLY A 508 1 11 HELIX 14 AB5 VAL A 552 ALA A 570 1 19 HELIX 15 AB6 ARG A 577 SER A 581 5 5 HELIX 16 AB7 SER A 584 ASN A 599 1 16 SHEET 1 AA1 6 LEU A 3 CYS A 5 0 SHEET 2 AA1 6 LEU A 8 SER A 11 -1 O LEU A 8 N CYS A 5 SHEET 3 AA1 6 TYR A 76 ARG A 80 -1 O SER A 78 N SER A 11 SHEET 4 AA1 6 THR A 150 ALA A 154 -1 O THR A 151 N VAL A 79 SHEET 5 AA1 6 PHE A 109 LEU A 113 -1 N PHE A 109 O ALA A 154 SHEET 6 AA1 6 ARG A 116 ARG A 121 -1 O GLU A 120 N VAL A 110 SHEET 1 AA2 5 HIS A 21 GLU A 26 0 SHEET 2 AA2 5 TYR A 52 TRP A 57 -1 O GLU A 53 N GLU A 26 SHEET 3 AA2 5 LEU A 87 ILE A 92 1 O ASN A 91 N VAL A 56 SHEET 4 AA2 5 PHE A 135 ARG A 142 -1 O HIS A 141 N ILE A 88 SHEET 5 AA2 5 THR A 127 MET A 130 -1 N THR A 127 O SER A 138 SHEET 1 AA3 7 ILE A 189 TYR A 198 0 SHEET 2 AA3 7 ARG A 204 SER A 212 -1 O THR A 211 N TYR A 190 SHEET 3 AA3 7 PHE A 284 ILE A 289 -1 O PHE A 286 N ILE A 210 SHEET 4 AA3 7 ARG A 243 SER A 248 1 N ARG A 243 O VAL A 285 SHEET 5 AA3 7 VAL A 427 HIS A 436 1 O ALA A 428 N ILE A 244 SHEET 6 AA3 7 SER A 512 ASN A 518 1 O LEU A 515 N ASP A 432 SHEET 7 AA3 7 CYS A 442 GLY A 446 -1 N TYR A 445 O THR A 514 SHEET 1 AA4 2 LEU A 216 ARG A 220 0 SHEET 2 AA4 2 PHE A 237 PHE A 239 -1 O ARG A 238 N ASP A 219 SSBOND 1 CYS A 442 CYS A 517 1555 1555 2.04 LINK C GLU I 9 N BIX I 10 1555 1555 1.33 LINK C3 BIX I 10 N GLY I 11 1555 1555 1.33 LINK ND1 HIS A 252 ZN ZN A 701 1555 1555 2.30 LINK OE1 GLU A 255 ZN ZN A 701 1555 1555 2.00 LINK OE2 GLU A 255 ZN ZN A 701 1555 1555 2.46 LINK ND1 HIS A 434 ZN ZN A 701 1555 1555 2.29 LINK ZN ZN A 701 O6 BIX I 10 1555 1555 2.01 CISPEP 1 LEU A 113 PRO A 114 0 1.58 CISPEP 2 PHE A 175 PRO A 176 0 8.82 CRYST1 65.429 81.372 104.000 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009615 0.00000