data_8V53 # _entry.id 8V53 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8V53 pdb_00008v53 10.2210/pdb8v53/pdb WWPDB D_1000279511 ? ? EMDB EMD-42978 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-12-10 ? 2 'EM metadata' 1 0 2025-12-10 ? 3 'Additional map' 1 0 2025-12-10 1 4 'Additional map' 1 0 2025-12-10 2 5 FSC 1 0 2025-12-10 ? 6 'Half map' 1 0 2025-12-10 1 7 'Half map' 1 0 2025-12-10 2 8 Image 1 0 2025-12-10 ? 9 Mask 1 0 2025-12-10 1 10 'Primary map' 1 0 2025-12-10 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 'Additional map' repository 'Initial release' ? ? 5 5 FSC repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 'Half map' repository 'Initial release' ? ? 8 8 Image repository 'Initial release' ? ? 9 9 Mask repository 'Initial release' ? ? 10 10 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8V53 _pdbx_database_status.recvd_initial_deposition_date 2023-11-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CryoEM structure of Ku homodimer in complex with hairpin DNA' _pdbx_database_related.db_id EMD-42978 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 isabelle.rouiller@unimelb.edu.au Isabelle Rouiller ? 'principal investigator/group leader' 0000-0002-1288-8575 4 amitk@bt.iitkgp.ac.in Amit Das Kumar 'principal investigator/group leader' 0000-0001-9703-1898 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Baral, J.' 1 0000-0002-3633-7823 'Rouiller, I.' 2 0000-0002-1288-8575 'Das, A.K.' 3 0000-0001-9703-1898 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'First cryoEM structure of bacterial Ku in complex with DNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baral, J.' 1 0000-0002-3633-7823 primary 'Rouiller, I.' 2 0000-0002-1288-8575 primary 'Das, A.K.' 3 0000-0001-9703-1898 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-homologous end joining protein Ku' 33609.898 2 ? ? ? ? 2 polymer syn 'DNA (21-MER)' 6506.188 1 ? ? ? 'Sequence was obtained from PDB:1JEY' 3 polymer syn 'DNA (34-MER)' 10325.685 1 ? ? ? 'Sequence was obtained from PDB:1JEY' # _entity_name_com.entity_id 1 _entity_name_com.name Mt-Ku # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGHHHHHHHHHHSSGHIEGRHMMRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYR DLARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSKSYVLLAKTLAETDRMAIV HFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPVLDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQ LQELIDTKLEGGQAFTAEDQPRLLDEPEDVSDLLAKLEASVKARSKANSNVPTPP ; ;MGHHHHHHHHHHSSGHIEGRHMMRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYR DLARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSKSYVLLAKTLAETDRMAIV HFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPVLDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQ LQELIDTKLEGGQAFTAEDQPRLLDEPEDVSDLLAKLEASVKARSKANSNVPTPP ; A,B ? 2 polydeoxyribonucleotide no no ;(DG)(DT)(DT)(DT)(DT)(DT)(DA)(DG)(DT)(DT)(DT)(DA)(DT)(DT)(DG)(DG)(DG)(DC)(DG)(DC) (DG) ; GTTTTTAGTTTATTGGGCGCG C ? 3 polydeoxyribonucleotide no no ;(DC)(DG)(DC)(DG)(DC)(DC)(DC)(DA)(DG)(DC)(DT)(DT)(DT)(DC)(DC)(DC)(DA)(DG)(DC)(DT) (DA)(DA)(DT)(DA)(DA)(DA)(DC)(DT)(DA)(DA)(DA)(DA)(DA)(DC) ; CGCGCCCAGCTTTCCCAGCTAATAAACTAAAAAC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 SER n 1 14 SER n 1 15 GLY n 1 16 HIS n 1 17 ILE n 1 18 GLU n 1 19 GLY n 1 20 ARG n 1 21 HIS n 1 22 MET n 1 23 MET n 1 24 ARG n 1 25 ALA n 1 26 ILE n 1 27 TRP n 1 28 THR n 1 29 GLY n 1 30 SER n 1 31 ILE n 1 32 ALA n 1 33 PHE n 1 34 GLY n 1 35 LEU n 1 36 VAL n 1 37 ASN n 1 38 VAL n 1 39 PRO n 1 40 VAL n 1 41 LYS n 1 42 VAL n 1 43 TYR n 1 44 SER n 1 45 ALA n 1 46 THR n 1 47 ALA n 1 48 ASP n 1 49 HIS n 1 50 ASP n 1 51 ILE n 1 52 ARG n 1 53 PHE n 1 54 HIS n 1 55 GLN n 1 56 VAL n 1 57 HIS n 1 58 ALA n 1 59 LYS n 1 60 ASP n 1 61 ASN n 1 62 GLY n 1 63 ARG n 1 64 ILE n 1 65 ARG n 1 66 TYR n 1 67 LYS n 1 68 ARG n 1 69 VAL n 1 70 CYS n 1 71 GLU n 1 72 ALA n 1 73 CYS n 1 74 GLY n 1 75 GLU n 1 76 VAL n 1 77 VAL n 1 78 ASP n 1 79 TYR n 1 80 ARG n 1 81 ASP n 1 82 LEU n 1 83 ALA n 1 84 ARG n 1 85 ALA n 1 86 TYR n 1 87 GLU n 1 88 SER n 1 89 GLY n 1 90 ASP n 1 91 GLY n 1 92 GLN n 1 93 MET n 1 94 VAL n 1 95 ALA n 1 96 ILE n 1 97 THR n 1 98 ASP n 1 99 ASP n 1 100 ASP n 1 101 ILE n 1 102 ALA n 1 103 SER n 1 104 LEU n 1 105 PRO n 1 106 GLU n 1 107 GLU n 1 108 ARG n 1 109 SER n 1 110 ARG n 1 111 GLU n 1 112 ILE n 1 113 GLU n 1 114 VAL n 1 115 LEU n 1 116 GLU n 1 117 PHE n 1 118 VAL n 1 119 PRO n 1 120 ALA n 1 121 ALA n 1 122 ASP n 1 123 VAL n 1 124 ASP n 1 125 PRO n 1 126 MET n 1 127 MET n 1 128 PHE n 1 129 ASP n 1 130 ARG n 1 131 SER n 1 132 TYR n 1 133 PHE n 1 134 LEU n 1 135 GLU n 1 136 PRO n 1 137 ASP n 1 138 SER n 1 139 LYS n 1 140 SER n 1 141 SER n 1 142 LYS n 1 143 SER n 1 144 TYR n 1 145 VAL n 1 146 LEU n 1 147 LEU n 1 148 ALA n 1 149 LYS n 1 150 THR n 1 151 LEU n 1 152 ALA n 1 153 GLU n 1 154 THR n 1 155 ASP n 1 156 ARG n 1 157 MET n 1 158 ALA n 1 159 ILE n 1 160 VAL n 1 161 HIS n 1 162 PHE n 1 163 THR n 1 164 LEU n 1 165 ARG n 1 166 ASN n 1 167 LYS n 1 168 THR n 1 169 ARG n 1 170 LEU n 1 171 ALA n 1 172 ALA n 1 173 LEU n 1 174 ARG n 1 175 VAL n 1 176 LYS n 1 177 ASP n 1 178 PHE n 1 179 GLY n 1 180 LYS n 1 181 ARG n 1 182 GLU n 1 183 VAL n 1 184 MET n 1 185 MET n 1 186 VAL n 1 187 HIS n 1 188 THR n 1 189 LEU n 1 190 LEU n 1 191 TRP n 1 192 PRO n 1 193 ASP n 1 194 GLU n 1 195 ILE n 1 196 ARG n 1 197 ASP n 1 198 PRO n 1 199 ASP n 1 200 PHE n 1 201 PRO n 1 202 VAL n 1 203 LEU n 1 204 ASP n 1 205 GLN n 1 206 LYS n 1 207 VAL n 1 208 GLU n 1 209 ILE n 1 210 LYS n 1 211 PRO n 1 212 ALA n 1 213 GLU n 1 214 LEU n 1 215 LYS n 1 216 MET n 1 217 ALA n 1 218 GLY n 1 219 GLN n 1 220 VAL n 1 221 VAL n 1 222 ASP n 1 223 SER n 1 224 MET n 1 225 ALA n 1 226 ASP n 1 227 ASP n 1 228 PHE n 1 229 ASN n 1 230 PRO n 1 231 ASP n 1 232 ARG n 1 233 TYR n 1 234 HIS n 1 235 ASP n 1 236 THR n 1 237 TYR n 1 238 GLN n 1 239 GLU n 1 240 GLN n 1 241 LEU n 1 242 GLN n 1 243 GLU n 1 244 LEU n 1 245 ILE n 1 246 ASP n 1 247 THR n 1 248 LYS n 1 249 LEU n 1 250 GLU n 1 251 GLY n 1 252 GLY n 1 253 GLN n 1 254 ALA n 1 255 PHE n 1 256 THR n 1 257 ALA n 1 258 GLU n 1 259 ASP n 1 260 GLN n 1 261 PRO n 1 262 ARG n 1 263 LEU n 1 264 LEU n 1 265 ASP n 1 266 GLU n 1 267 PRO n 1 268 GLU n 1 269 ASP n 1 270 VAL n 1 271 SER n 1 272 ASP n 1 273 LEU n 1 274 LEU n 1 275 ALA n 1 276 LYS n 1 277 LEU n 1 278 GLU n 1 279 ALA n 1 280 SER n 1 281 VAL n 1 282 LYS n 1 283 ALA n 1 284 ARG n 1 285 SER n 1 286 LYS n 1 287 ALA n 1 288 ASN n 1 289 SER n 1 290 ASN n 1 291 VAL n 1 292 PRO n 1 293 THR n 1 294 PRO n 1 295 PRO n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DT n 2 14 DT n 2 15 DG n 2 16 DG n 2 17 DG n 2 18 DC n 2 19 DG n 2 20 DC n 2 21 DG n 3 1 DC n 3 2 DG n 3 3 DC n 3 4 DG n 3 5 DC n 3 6 DC n 3 7 DC n 3 8 DA n 3 9 DG n 3 10 DC n 3 11 DT n 3 12 DT n 3 13 DT n 3 14 DC n 3 15 DC n 3 16 DC n 3 17 DA n 3 18 DG n 3 19 DC n 3 20 DT n 3 21 DA n 3 22 DA n 3 23 DT n 3 24 DA n 3 25 DA n 3 26 DA n 3 27 DC n 3 28 DT n 3 29 DA n 3 30 DA n 3 31 DA n 3 32 DA n 3 33 DA n 3 34 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 295 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mku, Rv0937c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis H37Rv' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant C43 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET16b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 21 'synthetic construct' ? 32630 ? 3 1 sample 1 34 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 HIS 3 -19 ? ? ? A . n A 1 4 HIS 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 HIS 11 -11 ? ? ? A . n A 1 12 HIS 12 -10 ? ? ? A . n A 1 13 SER 13 -9 ? ? ? A . n A 1 14 SER 14 -8 ? ? ? A . n A 1 15 GLY 15 -7 ? ? ? A . n A 1 16 HIS 16 -6 ? ? ? A . n A 1 17 ILE 17 -5 ? ? ? A . n A 1 18 GLU 18 -4 ? ? ? A . n A 1 19 GLY 19 -3 ? ? ? A . n A 1 20 ARG 20 -2 ? ? ? A . n A 1 21 HIS 21 -1 ? ? ? A . n A 1 22 MET 22 0 ? ? ? A . n A 1 23 MET 23 1 1 MET MET A . n A 1 24 ARG 24 2 2 ARG ARG A . n A 1 25 ALA 25 3 3 ALA ALA A . n A 1 26 ILE 26 4 4 ILE ILE A . n A 1 27 TRP 27 5 5 TRP TRP A . n A 1 28 THR 28 6 6 THR THR A . n A 1 29 GLY 29 7 7 GLY GLY A . n A 1 30 SER 30 8 8 SER SER A . n A 1 31 ILE 31 9 9 ILE ILE A . n A 1 32 ALA 32 10 10 ALA ALA A . n A 1 33 PHE 33 11 11 PHE PHE A . n A 1 34 GLY 34 12 12 GLY GLY A . n A 1 35 LEU 35 13 13 LEU LEU A . n A 1 36 VAL 36 14 14 VAL VAL A . n A 1 37 ASN 37 15 15 ASN ASN A . n A 1 38 VAL 38 16 16 VAL VAL A . n A 1 39 PRO 39 17 17 PRO PRO A . n A 1 40 VAL 40 18 18 VAL VAL A . n A 1 41 LYS 41 19 19 LYS LYS A . n A 1 42 VAL 42 20 20 VAL VAL A . n A 1 43 TYR 43 21 21 TYR TYR A . n A 1 44 SER 44 22 22 SER SER A . n A 1 45 ALA 45 23 23 ALA ALA A . n A 1 46 THR 46 24 24 THR THR A . n A 1 47 ALA 47 25 25 ALA ALA A . n A 1 48 ASP 48 26 26 ASP ASP A . n A 1 49 HIS 49 27 27 HIS HIS A . n A 1 50 ASP 50 28 28 ASP ASP A . n A 1 51 ILE 51 29 29 ILE ILE A . n A 1 52 ARG 52 30 30 ARG ARG A . n A 1 53 PHE 53 31 31 PHE PHE A . n A 1 54 HIS 54 32 32 HIS HIS A . n A 1 55 GLN 55 33 33 GLN GLN A . n A 1 56 VAL 56 34 34 VAL VAL A . n A 1 57 HIS 57 35 35 HIS HIS A . n A 1 58 ALA 58 36 36 ALA ALA A . n A 1 59 LYS 59 37 37 LYS LYS A . n A 1 60 ASP 60 38 38 ASP ASP A . n A 1 61 ASN 61 39 39 ASN ASN A . n A 1 62 GLY 62 40 40 GLY GLY A . n A 1 63 ARG 63 41 41 ARG ARG A . n A 1 64 ILE 64 42 42 ILE ILE A . n A 1 65 ARG 65 43 43 ARG ARG A . n A 1 66 TYR 66 44 44 TYR TYR A . n A 1 67 LYS 67 45 45 LYS LYS A . n A 1 68 ARG 68 46 46 ARG ARG A . n A 1 69 VAL 69 47 47 VAL VAL A . n A 1 70 CYS 70 48 48 CYS CYS A . n A 1 71 GLU 71 49 49 GLU GLU A . n A 1 72 ALA 72 50 50 ALA ALA A . n A 1 73 CYS 73 51 51 CYS CYS A . n A 1 74 GLY 74 52 52 GLY GLY A . n A 1 75 GLU 75 53 53 GLU GLU A . n A 1 76 VAL 76 54 54 VAL VAL A . n A 1 77 VAL 77 55 55 VAL VAL A . n A 1 78 ASP 78 56 56 ASP ASP A . n A 1 79 TYR 79 57 57 TYR TYR A . n A 1 80 ARG 80 58 58 ARG ARG A . n A 1 81 ASP 81 59 59 ASP ASP A . n A 1 82 LEU 82 60 60 LEU LEU A . n A 1 83 ALA 83 61 61 ALA ALA A . n A 1 84 ARG 84 62 62 ARG ARG A . n A 1 85 ALA 85 63 63 ALA ALA A . n A 1 86 TYR 86 64 64 TYR TYR A . n A 1 87 GLU 87 65 65 GLU GLU A . n A 1 88 SER 88 66 66 SER SER A . n A 1 89 GLY 89 67 67 GLY GLY A . n A 1 90 ASP 90 68 68 ASP ASP A . n A 1 91 GLY 91 69 69 GLY GLY A . n A 1 92 GLN 92 70 70 GLN GLN A . n A 1 93 MET 93 71 71 MET MET A . n A 1 94 VAL 94 72 72 VAL VAL A . n A 1 95 ALA 95 73 73 ALA ALA A . n A 1 96 ILE 96 74 74 ILE ILE A . n A 1 97 THR 97 75 75 THR THR A . n A 1 98 ASP 98 76 76 ASP ASP A . n A 1 99 ASP 99 77 77 ASP ASP A . n A 1 100 ASP 100 78 78 ASP ASP A . n A 1 101 ILE 101 79 79 ILE ILE A . n A 1 102 ALA 102 80 80 ALA ALA A . n A 1 103 SER 103 81 81 SER SER A . n A 1 104 LEU 104 82 82 LEU LEU A . n A 1 105 PRO 105 83 83 PRO PRO A . n A 1 106 GLU 106 84 84 GLU GLU A . n A 1 107 GLU 107 85 85 GLU GLU A . n A 1 108 ARG 108 86 86 ARG ARG A . n A 1 109 SER 109 87 87 SER SER A . n A 1 110 ARG 110 88 88 ARG ARG A . n A 1 111 GLU 111 89 89 GLU GLU A . n A 1 112 ILE 112 90 90 ILE ILE A . n A 1 113 GLU 113 91 91 GLU GLU A . n A 1 114 VAL 114 92 92 VAL VAL A . n A 1 115 LEU 115 93 93 LEU LEU A . n A 1 116 GLU 116 94 94 GLU GLU A . n A 1 117 PHE 117 95 95 PHE PHE A . n A 1 118 VAL 118 96 96 VAL VAL A . n A 1 119 PRO 119 97 97 PRO PRO A . n A 1 120 ALA 120 98 98 ALA ALA A . n A 1 121 ALA 121 99 99 ALA ALA A . n A 1 122 ASP 122 100 100 ASP ASP A . n A 1 123 VAL 123 101 101 VAL VAL A . n A 1 124 ASP 124 102 102 ASP ASP A . n A 1 125 PRO 125 103 103 PRO PRO A . n A 1 126 MET 126 104 104 MET MET A . n A 1 127 MET 127 105 105 MET MET A . n A 1 128 PHE 128 106 106 PHE PHE A . n A 1 129 ASP 129 107 107 ASP ASP A . n A 1 130 ARG 130 108 108 ARG ARG A . n A 1 131 SER 131 109 109 SER SER A . n A 1 132 TYR 132 110 110 TYR TYR A . n A 1 133 PHE 133 111 111 PHE PHE A . n A 1 134 LEU 134 112 112 LEU LEU A . n A 1 135 GLU 135 113 113 GLU GLU A . n A 1 136 PRO 136 114 114 PRO PRO A . n A 1 137 ASP 137 115 115 ASP ASP A . n A 1 138 SER 138 116 116 SER SER A . n A 1 139 LYS 139 117 117 LYS LYS A . n A 1 140 SER 140 118 118 SER SER A . n A 1 141 SER 141 119 119 SER SER A . n A 1 142 LYS 142 120 120 LYS LYS A . n A 1 143 SER 143 121 121 SER SER A . n A 1 144 TYR 144 122 122 TYR TYR A . n A 1 145 VAL 145 123 123 VAL VAL A . n A 1 146 LEU 146 124 124 LEU LEU A . n A 1 147 LEU 147 125 125 LEU LEU A . n A 1 148 ALA 148 126 126 ALA ALA A . n A 1 149 LYS 149 127 127 LYS LYS A . n A 1 150 THR 150 128 128 THR THR A . n A 1 151 LEU 151 129 129 LEU LEU A . n A 1 152 ALA 152 130 130 ALA ALA A . n A 1 153 GLU 153 131 131 GLU GLU A . n A 1 154 THR 154 132 132 THR THR A . n A 1 155 ASP 155 133 133 ASP ASP A . n A 1 156 ARG 156 134 134 ARG ARG A . n A 1 157 MET 157 135 135 MET MET A . n A 1 158 ALA 158 136 136 ALA ALA A . n A 1 159 ILE 159 137 137 ILE ILE A . n A 1 160 VAL 160 138 138 VAL VAL A . n A 1 161 HIS 161 139 139 HIS HIS A . n A 1 162 PHE 162 140 140 PHE PHE A . n A 1 163 THR 163 141 141 THR THR A . n A 1 164 LEU 164 142 142 LEU LEU A . n A 1 165 ARG 165 143 143 ARG ARG A . n A 1 166 ASN 166 144 144 ASN ASN A . n A 1 167 LYS 167 145 145 LYS LYS A . n A 1 168 THR 168 146 146 THR THR A . n A 1 169 ARG 169 147 147 ARG ARG A . n A 1 170 LEU 170 148 148 LEU LEU A . n A 1 171 ALA 171 149 149 ALA ALA A . n A 1 172 ALA 172 150 150 ALA ALA A . n A 1 173 LEU 173 151 151 LEU LEU A . n A 1 174 ARG 174 152 152 ARG ARG A . n A 1 175 VAL 175 153 153 VAL VAL A . n A 1 176 LYS 176 154 154 LYS LYS A . n A 1 177 ASP 177 155 155 ASP ASP A . n A 1 178 PHE 178 156 156 PHE PHE A . n A 1 179 GLY 179 157 157 GLY GLY A . n A 1 180 LYS 180 158 158 LYS LYS A . n A 1 181 ARG 181 159 159 ARG ARG A . n A 1 182 GLU 182 160 160 GLU GLU A . n A 1 183 VAL 183 161 161 VAL VAL A . n A 1 184 MET 184 162 162 MET MET A . n A 1 185 MET 185 163 163 MET MET A . n A 1 186 VAL 186 164 164 VAL VAL A . n A 1 187 HIS 187 165 165 HIS HIS A . n A 1 188 THR 188 166 166 THR THR A . n A 1 189 LEU 189 167 167 LEU LEU A . n A 1 190 LEU 190 168 168 LEU LEU A . n A 1 191 TRP 191 169 169 TRP TRP A . n A 1 192 PRO 192 170 170 PRO PRO A . n A 1 193 ASP 193 171 171 ASP ASP A . n A 1 194 GLU 194 172 172 GLU GLU A . n A 1 195 ILE 195 173 173 ILE ILE A . n A 1 196 ARG 196 174 174 ARG ARG A . n A 1 197 ASP 197 175 175 ASP ASP A . n A 1 198 PRO 198 176 176 PRO PRO A . n A 1 199 ASP 199 177 177 ASP ASP A . n A 1 200 PHE 200 178 178 PHE PHE A . n A 1 201 PRO 201 179 179 PRO PRO A . n A 1 202 VAL 202 180 180 VAL VAL A . n A 1 203 LEU 203 181 181 LEU LEU A . n A 1 204 ASP 204 182 182 ASP ASP A . n A 1 205 GLN 205 183 183 GLN GLN A . n A 1 206 LYS 206 184 184 LYS LYS A . n A 1 207 VAL 207 185 185 VAL VAL A . n A 1 208 GLU 208 186 186 GLU GLU A . n A 1 209 ILE 209 187 187 ILE ILE A . n A 1 210 LYS 210 188 188 LYS LYS A . n A 1 211 PRO 211 189 189 PRO PRO A . n A 1 212 ALA 212 190 190 ALA ALA A . n A 1 213 GLU 213 191 191 GLU GLU A . n A 1 214 LEU 214 192 192 LEU LEU A . n A 1 215 LYS 215 193 193 LYS LYS A . n A 1 216 MET 216 194 194 MET MET A . n A 1 217 ALA 217 195 195 ALA ALA A . n A 1 218 GLY 218 196 196 GLY GLY A . n A 1 219 GLN 219 197 197 GLN GLN A . n A 1 220 VAL 220 198 198 VAL VAL A . n A 1 221 VAL 221 199 199 VAL VAL A . n A 1 222 ASP 222 200 200 ASP ASP A . n A 1 223 SER 223 201 201 SER SER A . n A 1 224 MET 224 202 202 MET MET A . n A 1 225 ALA 225 203 203 ALA ALA A . n A 1 226 ASP 226 204 204 ASP ASP A . n A 1 227 ASP 227 205 205 ASP ASP A . n A 1 228 PHE 228 206 206 PHE PHE A . n A 1 229 ASN 229 207 207 ASN ASN A . n A 1 230 PRO 230 208 208 PRO PRO A . n A 1 231 ASP 231 209 209 ASP ASP A . n A 1 232 ARG 232 210 210 ARG ARG A . n A 1 233 TYR 233 211 211 TYR TYR A . n A 1 234 HIS 234 212 212 HIS HIS A . n A 1 235 ASP 235 213 213 ASP ASP A . n A 1 236 THR 236 214 214 THR THR A . n A 1 237 TYR 237 215 215 TYR TYR A . n A 1 238 GLN 238 216 216 GLN GLN A . n A 1 239 GLU 239 217 217 GLU GLU A . n A 1 240 GLN 240 218 218 GLN GLN A . n A 1 241 LEU 241 219 219 LEU LEU A . n A 1 242 GLN 242 220 220 GLN GLN A . n A 1 243 GLU 243 221 221 GLU GLU A . n A 1 244 LEU 244 222 222 LEU LEU A . n A 1 245 ILE 245 223 223 ILE ILE A . n A 1 246 ASP 246 224 224 ASP ASP A . n A 1 247 THR 247 225 225 THR THR A . n A 1 248 LYS 248 226 226 LYS LYS A . n A 1 249 LEU 249 227 ? ? ? A . n A 1 250 GLU 250 228 ? ? ? A . n A 1 251 GLY 251 229 ? ? ? A . n A 1 252 GLY 252 230 ? ? ? A . n A 1 253 GLN 253 231 ? ? ? A . n A 1 254 ALA 254 232 ? ? ? A . n A 1 255 PHE 255 233 ? ? ? A . n A 1 256 THR 256 234 ? ? ? A . n A 1 257 ALA 257 235 ? ? ? A . n A 1 258 GLU 258 236 ? ? ? A . n A 1 259 ASP 259 237 ? ? ? A . n A 1 260 GLN 260 238 ? ? ? A . n A 1 261 PRO 261 239 ? ? ? A . n A 1 262 ARG 262 240 ? ? ? A . n A 1 263 LEU 263 241 ? ? ? A . n A 1 264 LEU 264 242 ? ? ? A . n A 1 265 ASP 265 243 ? ? ? A . n A 1 266 GLU 266 244 ? ? ? A . n A 1 267 PRO 267 245 ? ? ? A . n A 1 268 GLU 268 246 ? ? ? A . n A 1 269 ASP 269 247 ? ? ? A . n A 1 270 VAL 270 248 ? ? ? A . n A 1 271 SER 271 249 ? ? ? A . n A 1 272 ASP 272 250 ? ? ? A . n A 1 273 LEU 273 251 ? ? ? A . n A 1 274 LEU 274 252 ? ? ? A . n A 1 275 ALA 275 253 ? ? ? A . n A 1 276 LYS 276 254 ? ? ? A . n A 1 277 LEU 277 255 ? ? ? A . n A 1 278 GLU 278 256 ? ? ? A . n A 1 279 ALA 279 257 ? ? ? A . n A 1 280 SER 280 258 ? ? ? A . n A 1 281 VAL 281 259 ? ? ? A . n A 1 282 LYS 282 260 ? ? ? A . n A 1 283 ALA 283 261 ? ? ? A . n A 1 284 ARG 284 262 ? ? ? A . n A 1 285 SER 285 263 ? ? ? A . n A 1 286 LYS 286 264 ? ? ? A . n A 1 287 ALA 287 265 ? ? ? A . n A 1 288 ASN 288 266 ? ? ? A . n A 1 289 SER 289 267 ? ? ? A . n A 1 290 ASN 290 268 ? ? ? A . n A 1 291 VAL 291 269 ? ? ? A . n A 1 292 PRO 292 270 ? ? ? A . n A 1 293 THR 293 271 ? ? ? A . n A 1 294 PRO 294 272 ? ? ? A . n A 1 295 PRO 295 273 ? ? ? A . n B 1 1 MET 1 -21 ? ? ? B . n B 1 2 GLY 2 -20 ? ? ? B . n B 1 3 HIS 3 -19 ? ? ? B . n B 1 4 HIS 4 -18 ? ? ? B . n B 1 5 HIS 5 -17 ? ? ? B . n B 1 6 HIS 6 -16 ? ? ? B . n B 1 7 HIS 7 -15 ? ? ? B . n B 1 8 HIS 8 -14 ? ? ? B . n B 1 9 HIS 9 -13 ? ? ? B . n B 1 10 HIS 10 -12 ? ? ? B . n B 1 11 HIS 11 -11 ? ? ? B . n B 1 12 HIS 12 -10 ? ? ? B . n B 1 13 SER 13 -9 ? ? ? B . n B 1 14 SER 14 -8 ? ? ? B . n B 1 15 GLY 15 -7 ? ? ? B . n B 1 16 HIS 16 -6 ? ? ? B . n B 1 17 ILE 17 -5 ? ? ? B . n B 1 18 GLU 18 -4 ? ? ? B . n B 1 19 GLY 19 -3 ? ? ? B . n B 1 20 ARG 20 -2 ? ? ? B . n B 1 21 HIS 21 -1 ? ? ? B . n B 1 22 MET 22 0 ? ? ? B . n B 1 23 MET 23 1 1 MET MET B . n B 1 24 ARG 24 2 2 ARG ARG B . n B 1 25 ALA 25 3 3 ALA ALA B . n B 1 26 ILE 26 4 4 ILE ILE B . n B 1 27 TRP 27 5 5 TRP TRP B . n B 1 28 THR 28 6 6 THR THR B . n B 1 29 GLY 29 7 7 GLY GLY B . n B 1 30 SER 30 8 8 SER SER B . n B 1 31 ILE 31 9 9 ILE ILE B . n B 1 32 ALA 32 10 10 ALA ALA B . n B 1 33 PHE 33 11 11 PHE PHE B . n B 1 34 GLY 34 12 12 GLY GLY B . n B 1 35 LEU 35 13 13 LEU LEU B . n B 1 36 VAL 36 14 14 VAL VAL B . n B 1 37 ASN 37 15 15 ASN ASN B . n B 1 38 VAL 38 16 16 VAL VAL B . n B 1 39 PRO 39 17 17 PRO PRO B . n B 1 40 VAL 40 18 18 VAL VAL B . n B 1 41 LYS 41 19 19 LYS LYS B . n B 1 42 VAL 42 20 20 VAL VAL B . n B 1 43 TYR 43 21 21 TYR TYR B . n B 1 44 SER 44 22 22 SER SER B . n B 1 45 ALA 45 23 23 ALA ALA B . n B 1 46 THR 46 24 24 THR THR B . n B 1 47 ALA 47 25 25 ALA ALA B . n B 1 48 ASP 48 26 26 ASP ASP B . n B 1 49 HIS 49 27 27 HIS HIS B . n B 1 50 ASP 50 28 28 ASP ASP B . n B 1 51 ILE 51 29 29 ILE ILE B . n B 1 52 ARG 52 30 30 ARG ARG B . n B 1 53 PHE 53 31 31 PHE PHE B . n B 1 54 HIS 54 32 32 HIS HIS B . n B 1 55 GLN 55 33 33 GLN GLN B . n B 1 56 VAL 56 34 34 VAL VAL B . n B 1 57 HIS 57 35 35 HIS HIS B . n B 1 58 ALA 58 36 36 ALA ALA B . n B 1 59 LYS 59 37 37 LYS LYS B . n B 1 60 ASP 60 38 38 ASP ASP B . n B 1 61 ASN 61 39 39 ASN ASN B . n B 1 62 GLY 62 40 40 GLY GLY B . n B 1 63 ARG 63 41 41 ARG ARG B . n B 1 64 ILE 64 42 42 ILE ILE B . n B 1 65 ARG 65 43 43 ARG ARG B . n B 1 66 TYR 66 44 44 TYR TYR B . n B 1 67 LYS 67 45 45 LYS LYS B . n B 1 68 ARG 68 46 46 ARG ARG B . n B 1 69 VAL 69 47 47 VAL VAL B . n B 1 70 CYS 70 48 48 CYS CYS B . n B 1 71 GLU 71 49 49 GLU GLU B . n B 1 72 ALA 72 50 50 ALA ALA B . n B 1 73 CYS 73 51 51 CYS CYS B . n B 1 74 GLY 74 52 52 GLY GLY B . n B 1 75 GLU 75 53 53 GLU GLU B . n B 1 76 VAL 76 54 54 VAL VAL B . n B 1 77 VAL 77 55 55 VAL VAL B . n B 1 78 ASP 78 56 56 ASP ASP B . n B 1 79 TYR 79 57 57 TYR TYR B . n B 1 80 ARG 80 58 58 ARG ARG B . n B 1 81 ASP 81 59 59 ASP ASP B . n B 1 82 LEU 82 60 60 LEU LEU B . n B 1 83 ALA 83 61 61 ALA ALA B . n B 1 84 ARG 84 62 62 ARG ARG B . n B 1 85 ALA 85 63 63 ALA ALA B . n B 1 86 TYR 86 64 64 TYR TYR B . n B 1 87 GLU 87 65 65 GLU GLU B . n B 1 88 SER 88 66 66 SER SER B . n B 1 89 GLY 89 67 67 GLY GLY B . n B 1 90 ASP 90 68 68 ASP ASP B . n B 1 91 GLY 91 69 69 GLY GLY B . n B 1 92 GLN 92 70 70 GLN GLN B . n B 1 93 MET 93 71 71 MET MET B . n B 1 94 VAL 94 72 72 VAL VAL B . n B 1 95 ALA 95 73 73 ALA ALA B . n B 1 96 ILE 96 74 74 ILE ILE B . n B 1 97 THR 97 75 75 THR THR B . n B 1 98 ASP 98 76 76 ASP ASP B . n B 1 99 ASP 99 77 77 ASP ASP B . n B 1 100 ASP 100 78 78 ASP ASP B . n B 1 101 ILE 101 79 79 ILE ILE B . n B 1 102 ALA 102 80 80 ALA ALA B . n B 1 103 SER 103 81 81 SER SER B . n B 1 104 LEU 104 82 82 LEU LEU B . n B 1 105 PRO 105 83 83 PRO PRO B . n B 1 106 GLU 106 84 84 GLU GLU B . n B 1 107 GLU 107 85 85 GLU GLU B . n B 1 108 ARG 108 86 86 ARG ARG B . n B 1 109 SER 109 87 87 SER SER B . n B 1 110 ARG 110 88 88 ARG ARG B . n B 1 111 GLU 111 89 89 GLU GLU B . n B 1 112 ILE 112 90 90 ILE ILE B . n B 1 113 GLU 113 91 91 GLU GLU B . n B 1 114 VAL 114 92 92 VAL VAL B . n B 1 115 LEU 115 93 93 LEU LEU B . n B 1 116 GLU 116 94 94 GLU GLU B . n B 1 117 PHE 117 95 95 PHE PHE B . n B 1 118 VAL 118 96 96 VAL VAL B . n B 1 119 PRO 119 97 97 PRO PRO B . n B 1 120 ALA 120 98 98 ALA ALA B . n B 1 121 ALA 121 99 99 ALA ALA B . n B 1 122 ASP 122 100 100 ASP ASP B . n B 1 123 VAL 123 101 101 VAL VAL B . n B 1 124 ASP 124 102 102 ASP ASP B . n B 1 125 PRO 125 103 103 PRO PRO B . n B 1 126 MET 126 104 104 MET MET B . n B 1 127 MET 127 105 105 MET MET B . n B 1 128 PHE 128 106 106 PHE PHE B . n B 1 129 ASP 129 107 107 ASP ASP B . n B 1 130 ARG 130 108 108 ARG ARG B . n B 1 131 SER 131 109 109 SER SER B . n B 1 132 TYR 132 110 110 TYR TYR B . n B 1 133 PHE 133 111 111 PHE PHE B . n B 1 134 LEU 134 112 112 LEU LEU B . n B 1 135 GLU 135 113 113 GLU GLU B . n B 1 136 PRO 136 114 114 PRO PRO B . n B 1 137 ASP 137 115 115 ASP ASP B . n B 1 138 SER 138 116 116 SER SER B . n B 1 139 LYS 139 117 117 LYS LYS B . n B 1 140 SER 140 118 118 SER SER B . n B 1 141 SER 141 119 119 SER SER B . n B 1 142 LYS 142 120 120 LYS LYS B . n B 1 143 SER 143 121 121 SER SER B . n B 1 144 TYR 144 122 122 TYR TYR B . n B 1 145 VAL 145 123 123 VAL VAL B . n B 1 146 LEU 146 124 124 LEU LEU B . n B 1 147 LEU 147 125 125 LEU LEU B . n B 1 148 ALA 148 126 126 ALA ALA B . n B 1 149 LYS 149 127 127 LYS LYS B . n B 1 150 THR 150 128 128 THR THR B . n B 1 151 LEU 151 129 129 LEU LEU B . n B 1 152 ALA 152 130 130 ALA ALA B . n B 1 153 GLU 153 131 131 GLU GLU B . n B 1 154 THR 154 132 132 THR THR B . n B 1 155 ASP 155 133 133 ASP ASP B . n B 1 156 ARG 156 134 134 ARG ARG B . n B 1 157 MET 157 135 135 MET MET B . n B 1 158 ALA 158 136 136 ALA ALA B . n B 1 159 ILE 159 137 137 ILE ILE B . n B 1 160 VAL 160 138 138 VAL VAL B . n B 1 161 HIS 161 139 139 HIS HIS B . n B 1 162 PHE 162 140 140 PHE PHE B . n B 1 163 THR 163 141 141 THR THR B . n B 1 164 LEU 164 142 142 LEU LEU B . n B 1 165 ARG 165 143 143 ARG ARG B . n B 1 166 ASN 166 144 144 ASN ASN B . n B 1 167 LYS 167 145 145 LYS LYS B . n B 1 168 THR 168 146 146 THR THR B . n B 1 169 ARG 169 147 147 ARG ARG B . n B 1 170 LEU 170 148 148 LEU LEU B . n B 1 171 ALA 171 149 149 ALA ALA B . n B 1 172 ALA 172 150 150 ALA ALA B . n B 1 173 LEU 173 151 151 LEU LEU B . n B 1 174 ARG 174 152 152 ARG ARG B . n B 1 175 VAL 175 153 153 VAL VAL B . n B 1 176 LYS 176 154 154 LYS LYS B . n B 1 177 ASP 177 155 155 ASP ASP B . n B 1 178 PHE 178 156 156 PHE PHE B . n B 1 179 GLY 179 157 157 GLY GLY B . n B 1 180 LYS 180 158 158 LYS LYS B . n B 1 181 ARG 181 159 159 ARG ARG B . n B 1 182 GLU 182 160 160 GLU GLU B . n B 1 183 VAL 183 161 161 VAL VAL B . n B 1 184 MET 184 162 162 MET MET B . n B 1 185 MET 185 163 163 MET MET B . n B 1 186 VAL 186 164 164 VAL VAL B . n B 1 187 HIS 187 165 165 HIS HIS B . n B 1 188 THR 188 166 166 THR THR B . n B 1 189 LEU 189 167 167 LEU LEU B . n B 1 190 LEU 190 168 168 LEU LEU B . n B 1 191 TRP 191 169 169 TRP TRP B . n B 1 192 PRO 192 170 170 PRO PRO B . n B 1 193 ASP 193 171 171 ASP ASP B . n B 1 194 GLU 194 172 172 GLU GLU B . n B 1 195 ILE 195 173 173 ILE ILE B . n B 1 196 ARG 196 174 174 ARG ARG B . n B 1 197 ASP 197 175 175 ASP ASP B . n B 1 198 PRO 198 176 176 PRO PRO B . n B 1 199 ASP 199 177 177 ASP ASP B . n B 1 200 PHE 200 178 178 PHE PHE B . n B 1 201 PRO 201 179 179 PRO PRO B . n B 1 202 VAL 202 180 180 VAL VAL B . n B 1 203 LEU 203 181 181 LEU LEU B . n B 1 204 ASP 204 182 182 ASP ASP B . n B 1 205 GLN 205 183 183 GLN GLN B . n B 1 206 LYS 206 184 184 LYS LYS B . n B 1 207 VAL 207 185 185 VAL VAL B . n B 1 208 GLU 208 186 186 GLU GLU B . n B 1 209 ILE 209 187 187 ILE ILE B . n B 1 210 LYS 210 188 188 LYS LYS B . n B 1 211 PRO 211 189 189 PRO PRO B . n B 1 212 ALA 212 190 190 ALA ALA B . n B 1 213 GLU 213 191 191 GLU GLU B . n B 1 214 LEU 214 192 192 LEU LEU B . n B 1 215 LYS 215 193 193 LYS LYS B . n B 1 216 MET 216 194 194 MET MET B . n B 1 217 ALA 217 195 195 ALA ALA B . n B 1 218 GLY 218 196 196 GLY GLY B . n B 1 219 GLN 219 197 197 GLN GLN B . n B 1 220 VAL 220 198 198 VAL VAL B . n B 1 221 VAL 221 199 199 VAL VAL B . n B 1 222 ASP 222 200 200 ASP ASP B . n B 1 223 SER 223 201 201 SER SER B . n B 1 224 MET 224 202 202 MET MET B . n B 1 225 ALA 225 203 203 ALA ALA B . n B 1 226 ASP 226 204 204 ASP ASP B . n B 1 227 ASP 227 205 205 ASP ASP B . n B 1 228 PHE 228 206 206 PHE PHE B . n B 1 229 ASN 229 207 207 ASN ASN B . n B 1 230 PRO 230 208 208 PRO PRO B . n B 1 231 ASP 231 209 209 ASP ASP B . n B 1 232 ARG 232 210 210 ARG ARG B . n B 1 233 TYR 233 211 211 TYR TYR B . n B 1 234 HIS 234 212 212 HIS HIS B . n B 1 235 ASP 235 213 213 ASP ASP B . n B 1 236 THR 236 214 214 THR THR B . n B 1 237 TYR 237 215 215 TYR TYR B . n B 1 238 GLN 238 216 216 GLN GLN B . n B 1 239 GLU 239 217 217 GLU GLU B . n B 1 240 GLN 240 218 218 GLN GLN B . n B 1 241 LEU 241 219 219 LEU LEU B . n B 1 242 GLN 242 220 220 GLN GLN B . n B 1 243 GLU 243 221 221 GLU GLU B . n B 1 244 LEU 244 222 222 LEU LEU B . n B 1 245 ILE 245 223 223 ILE ILE B . n B 1 246 ASP 246 224 224 ASP ASP B . n B 1 247 THR 247 225 225 THR THR B . n B 1 248 LYS 248 226 226 LYS LYS B . n B 1 249 LEU 249 227 227 LEU LEU B . n B 1 250 GLU 250 228 ? ? ? B . n B 1 251 GLY 251 229 ? ? ? B . n B 1 252 GLY 252 230 ? ? ? B . n B 1 253 GLN 253 231 ? ? ? B . n B 1 254 ALA 254 232 ? ? ? B . n B 1 255 PHE 255 233 ? ? ? B . n B 1 256 THR 256 234 ? ? ? B . n B 1 257 ALA 257 235 ? ? ? B . n B 1 258 GLU 258 236 ? ? ? B . n B 1 259 ASP 259 237 ? ? ? B . n B 1 260 GLN 260 238 ? ? ? B . n B 1 261 PRO 261 239 ? ? ? B . n B 1 262 ARG 262 240 ? ? ? B . n B 1 263 LEU 263 241 ? ? ? B . n B 1 264 LEU 264 242 ? ? ? B . n B 1 265 ASP 265 243 ? ? ? B . n B 1 266 GLU 266 244 ? ? ? B . n B 1 267 PRO 267 245 ? ? ? B . n B 1 268 GLU 268 246 ? ? ? B . n B 1 269 ASP 269 247 ? ? ? B . n B 1 270 VAL 270 248 ? ? ? B . n B 1 271 SER 271 249 ? ? ? B . n B 1 272 ASP 272 250 ? ? ? B . n B 1 273 LEU 273 251 ? ? ? B . n B 1 274 LEU 274 252 ? ? ? B . n B 1 275 ALA 275 253 ? ? ? B . n B 1 276 LYS 276 254 ? ? ? B . n B 1 277 LEU 277 255 ? ? ? B . n B 1 278 GLU 278 256 ? ? ? B . n B 1 279 ALA 279 257 ? ? ? B . n B 1 280 SER 280 258 ? ? ? B . n B 1 281 VAL 281 259 ? ? ? B . n B 1 282 LYS 282 260 ? ? ? B . n B 1 283 ALA 283 261 ? ? ? B . n B 1 284 ARG 284 262 ? ? ? B . n B 1 285 SER 285 263 ? ? ? B . n B 1 286 LYS 286 264 ? ? ? B . n B 1 287 ALA 287 265 ? ? ? B . n B 1 288 ASN 288 266 ? ? ? B . n B 1 289 SER 289 267 ? ? ? B . n B 1 290 ASN 290 268 ? ? ? B . n B 1 291 VAL 291 269 ? ? ? B . n B 1 292 PRO 292 270 ? ? ? B . n B 1 293 THR 293 271 ? ? ? B . n B 1 294 PRO 294 272 ? ? ? B . n B 1 295 PRO 295 273 ? ? ? B . n C 2 1 DG 1 1 1 DG DG C . n C 2 2 DT 2 2 2 DT DT C . n C 2 3 DT 3 3 3 DT DT C . n C 2 4 DT 4 4 4 DT DT C . n C 2 5 DT 5 5 5 DT DT C . n C 2 6 DT 6 6 6 DT DT C . n C 2 7 DA 7 7 7 DA DA C . n C 2 8 DG 8 8 8 DG DG C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DT 10 10 10 DT DT C . n C 2 11 DT 11 11 11 DT DT C . n C 2 12 DA 12 12 12 DA DA C . n C 2 13 DT 13 13 13 DT DT C . n C 2 14 DT 14 14 14 DT DT C . n C 2 15 DG 15 15 15 DG DG C . n C 2 16 DG 16 16 16 DG DG C . n C 2 17 DG 17 17 ? ? ? C . n C 2 18 DC 18 18 ? ? ? C . n C 2 19 DG 19 19 ? ? ? C . n C 2 20 DC 20 20 ? ? ? C . n C 2 21 DG 21 21 ? ? ? C . n D 3 1 DC 1 -18 ? ? ? D . n D 3 2 DG 2 -17 ? ? ? D . n D 3 3 DC 3 -16 ? ? ? D . n D 3 4 DG 4 -15 ? ? ? D . n D 3 5 DC 5 -14 ? ? ? D . n D 3 6 DC 6 -13 ? ? ? D . n D 3 7 DC 7 -12 ? ? ? D . n D 3 8 DA 8 -11 ? ? ? D . n D 3 9 DG 9 -10 ? ? ? D . n D 3 10 DC 10 -9 ? ? ? D . n D 3 11 DT 11 -8 ? ? ? D . n D 3 12 DT 12 -7 ? ? ? D . n D 3 13 DT 13 -6 ? ? ? D . n D 3 14 DC 14 -5 ? ? ? D . n D 3 15 DC 15 -4 ? ? ? D . n D 3 16 DC 16 -3 ? ? ? D . n D 3 17 DA 17 -2 ? ? ? D . n D 3 18 DG 18 -1 ? ? ? D . n D 3 19 DC 19 0 ? ? ? D . n D 3 20 DT 20 1 1 DT DT D . n D 3 21 DA 21 2 2 DA DA D . n D 3 22 DA 22 3 3 DA DA D . n D 3 23 DT 23 4 4 DT DT D . n D 3 24 DA 24 5 5 DA DA D . n D 3 25 DA 25 6 6 DA DA D . n D 3 26 DA 26 7 7 DA DA D . n D 3 27 DC 27 8 8 DC DC D . n D 3 28 DT 28 9 9 DT DT D . n D 3 29 DA 29 10 10 DA DA D . n D 3 30 DA 30 11 11 DA DA D . n D 3 31 DA 31 12 12 DA DA D . n D 3 32 DA 32 13 13 DA DA D . n D 3 33 DA 33 14 14 DA DA D . n D 3 34 DC 34 15 15 DC DC D . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8V53 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8V53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8V53 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8V53 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 4429 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.604 ? 6123 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 23.899 ? 804 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.042 ? 679 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 690 ? f_plane_restr ? ? # _struct.entry_id 8V53 _struct.title 'CryoEM structure of Ku homodimer in complex with hairpin DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8V53 _struct_keywords.text 'NHEJ, DNA repair, Mycobacterium tuberculosis, DNA synapsis, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP KU_MYCTU P9WKD9 ? 1 ;MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDLARAYESGDGQMVAITDDDIA SLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSKSYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKRE VMMVHTLLWPDEIRDPDFPVLDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP ; 1 2 PDB 8V53 8V53 ? 2 ? 1 3 PDB 8V53 8V53 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8V53 A 23 ? 295 ? P9WKD9 1 ? 273 ? 1 273 2 1 8V53 B 23 ? 295 ? P9WKD9 1 ? 273 ? 1 273 3 2 8V53 C 1 ? 21 ? 8V53 1 ? 21 ? 1 21 4 3 8V53 D 1 ? 34 ? 8V53 -18 ? 15 ? -18 15 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8V53 MET A 1 ? UNP P9WKD9 ? ? 'initiating methionine' -21 1 1 8V53 GLY A 2 ? UNP P9WKD9 ? ? 'expression tag' -20 2 1 8V53 HIS A 3 ? UNP P9WKD9 ? ? 'expression tag' -19 3 1 8V53 HIS A 4 ? UNP P9WKD9 ? ? 'expression tag' -18 4 1 8V53 HIS A 5 ? UNP P9WKD9 ? ? 'expression tag' -17 5 1 8V53 HIS A 6 ? UNP P9WKD9 ? ? 'expression tag' -16 6 1 8V53 HIS A 7 ? UNP P9WKD9 ? ? 'expression tag' -15 7 1 8V53 HIS A 8 ? UNP P9WKD9 ? ? 'expression tag' -14 8 1 8V53 HIS A 9 ? UNP P9WKD9 ? ? 'expression tag' -13 9 1 8V53 HIS A 10 ? UNP P9WKD9 ? ? 'expression tag' -12 10 1 8V53 HIS A 11 ? UNP P9WKD9 ? ? 'expression tag' -11 11 1 8V53 HIS A 12 ? UNP P9WKD9 ? ? 'expression tag' -10 12 1 8V53 SER A 13 ? UNP P9WKD9 ? ? 'expression tag' -9 13 1 8V53 SER A 14 ? UNP P9WKD9 ? ? 'expression tag' -8 14 1 8V53 GLY A 15 ? UNP P9WKD9 ? ? 'expression tag' -7 15 1 8V53 HIS A 16 ? UNP P9WKD9 ? ? 'expression tag' -6 16 1 8V53 ILE A 17 ? UNP P9WKD9 ? ? 'expression tag' -5 17 1 8V53 GLU A 18 ? UNP P9WKD9 ? ? 'expression tag' -4 18 1 8V53 GLY A 19 ? UNP P9WKD9 ? ? 'expression tag' -3 19 1 8V53 ARG A 20 ? UNP P9WKD9 ? ? 'expression tag' -2 20 1 8V53 HIS A 21 ? UNP P9WKD9 ? ? 'expression tag' -1 21 1 8V53 MET A 22 ? UNP P9WKD9 ? ? 'expression tag' 0 22 2 8V53 MET B 1 ? UNP P9WKD9 ? ? 'initiating methionine' -21 23 2 8V53 GLY B 2 ? UNP P9WKD9 ? ? 'expression tag' -20 24 2 8V53 HIS B 3 ? UNP P9WKD9 ? ? 'expression tag' -19 25 2 8V53 HIS B 4 ? UNP P9WKD9 ? ? 'expression tag' -18 26 2 8V53 HIS B 5 ? UNP P9WKD9 ? ? 'expression tag' -17 27 2 8V53 HIS B 6 ? UNP P9WKD9 ? ? 'expression tag' -16 28 2 8V53 HIS B 7 ? UNP P9WKD9 ? ? 'expression tag' -15 29 2 8V53 HIS B 8 ? UNP P9WKD9 ? ? 'expression tag' -14 30 2 8V53 HIS B 9 ? UNP P9WKD9 ? ? 'expression tag' -13 31 2 8V53 HIS B 10 ? UNP P9WKD9 ? ? 'expression tag' -12 32 2 8V53 HIS B 11 ? UNP P9WKD9 ? ? 'expression tag' -11 33 2 8V53 HIS B 12 ? UNP P9WKD9 ? ? 'expression tag' -10 34 2 8V53 SER B 13 ? UNP P9WKD9 ? ? 'expression tag' -9 35 2 8V53 SER B 14 ? UNP P9WKD9 ? ? 'expression tag' -8 36 2 8V53 GLY B 15 ? UNP P9WKD9 ? ? 'expression tag' -7 37 2 8V53 HIS B 16 ? UNP P9WKD9 ? ? 'expression tag' -6 38 2 8V53 ILE B 17 ? UNP P9WKD9 ? ? 'expression tag' -5 39 2 8V53 GLU B 18 ? UNP P9WKD9 ? ? 'expression tag' -4 40 2 8V53 GLY B 19 ? UNP P9WKD9 ? ? 'expression tag' -3 41 2 8V53 ARG B 20 ? UNP P9WKD9 ? ? 'expression tag' -2 42 2 8V53 HIS B 21 ? UNP P9WKD9 ? ? 'expression tag' -1 43 2 8V53 MET B 22 ? UNP P9WKD9 ? ? 'expression tag' 0 44 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 78 ? ARG A 80 ? ASP A 56 ARG A 58 5 ? 3 HELX_P HELX_P2 AA2 ASP A 100 ? SER A 109 ? ASP A 78 SER A 87 5 ? 10 HELX_P HELX_P3 AA3 ALA A 121 ? VAL A 123 ? ALA A 99 VAL A 101 5 ? 3 HELX_P HELX_P4 AA4 SER A 141 ? ALA A 152 ? SER A 119 ALA A 130 1 ? 12 HELX_P HELX_P5 AA5 TRP A 191 ? ILE A 195 ? TRP A 169 ILE A 173 5 ? 5 HELX_P HELX_P6 AA6 LYS A 210 ? SER A 223 ? LYS A 188 SER A 201 1 ? 14 HELX_P HELX_P7 AA7 ASP A 235 ? ASP A 246 ? ASP A 213 ASP A 224 1 ? 12 HELX_P HELX_P8 AA8 ASP B 78 ? ARG B 80 ? ASP B 56 ARG B 58 5 ? 3 HELX_P HELX_P9 AA9 THR B 97 ? ALA B 102 ? THR B 75 ALA B 80 1 ? 6 HELX_P HELX_P10 AB1 ALA B 121 ? VAL B 123 ? ALA B 99 VAL B 101 5 ? 3 HELX_P HELX_P11 AB2 SER B 140 ? ASP B 155 ? SER B 118 ASP B 133 1 ? 16 HELX_P HELX_P12 AB3 PRO B 201 ? GLN B 205 ? PRO B 179 GLN B 183 5 ? 5 HELX_P HELX_P13 AB4 LYS B 210 ? LYS B 215 ? LYS B 188 LYS B 193 1 ? 6 HELX_P HELX_P14 AB5 LYS B 215 ? MET B 224 ? LYS B 193 MET B 202 1 ? 10 HELX_P HELX_P15 AB6 ASP B 235 ? LEU B 249 ? ASP B 213 LEU B 227 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 34 N3 ? ? C DG 1 D DC 15 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? C DT 2 O2 ? ? ? 1_555 D DA 33 N6 ? ? C DT 2 D DA 14 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog3 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 31 N6 ? ? C DT 3 D DA 12 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog4 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 31 N1 ? ? C DT 4 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 31 N6 ? ? C DT 4 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 30 N1 ? ? C DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 30 N6 ? ? C DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 29 N1 ? ? C DT 6 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 29 N6 ? ? C DT 6 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 28 N3 ? ? C DA 7 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 28 O4 ? ? C DA 7 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 27 N3 ? ? C DG 8 D DC 8 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog13 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 26 N1 ? ? C DT 9 D DA 7 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog14 hydrog ? ? C DT 11 N3 ? ? ? 1_555 D DA 24 N1 ? ? C DT 11 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 11 O4 ? ? ? 1_555 D DA 24 N6 ? ? C DT 11 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 23 N3 ? ? C DA 12 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 23 O4 ? ? C DA 12 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 6 ? AA3 ? 2 ? AA4 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 30 ? PHE A 33 ? SER A 8 PHE A 11 AA1 2 VAL A 36 ? SER A 44 ? VAL A 14 SER A 22 AA1 3 PHE A 128 ? PRO A 136 ? PHE A 106 PRO A 114 AA1 4 MET A 184 ? LEU A 189 ? MET A 162 LEU A 167 AA1 5 ALA A 171 ? VAL A 175 ? ALA A 149 VAL A 153 AA1 6 ARG A 156 ? HIS A 161 ? ARG A 134 HIS A 139 AA1 7 GLU A 113 ? PRO A 119 ? GLU A 91 PRO A 97 AA2 1 LEU A 82 ? ALA A 85 ? LEU A 60 ALA A 63 AA2 2 HIS B 54 ? HIS B 57 ? HIS B 32 HIS B 35 AA2 3 GLY B 62 ? CYS B 70 ? GLY B 40 CYS B 48 AA2 4 GLY A 62 ? CYS A 70 ? GLY A 40 CYS A 48 AA2 5 HIS A 54 ? HIS A 57 ? HIS A 32 HIS A 35 AA2 6 LEU B 82 ? ALA B 85 ? LEU B 60 ALA B 63 AA3 1 THR A 163 ? LEU A 164 ? THR A 141 LEU A 142 AA3 2 LYS A 167 ? THR A 168 ? LYS A 145 THR A 146 AA4 1 TRP B 27 ? ILE B 31 ? TRP B 5 ILE B 9 AA4 2 VAL B 38 ? SER B 44 ? VAL B 16 SER B 22 AA4 3 PHE B 128 ? PRO B 136 ? PHE B 106 PRO B 114 AA4 4 GLU B 182 ? LEU B 189 ? GLU B 160 LEU B 167 AA4 5 LYS B 167 ? ASP B 177 ? LYS B 145 ASP B 155 AA4 6 ARG B 156 ? LEU B 164 ? ARG B 134 LEU B 142 AA4 7 GLU B 113 ? PRO B 119 ? GLU B 91 PRO B 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 31 ? N ILE A 9 O VAL A 38 ? O VAL A 16 AA1 2 3 N LYS A 41 ? N LYS A 19 O GLU A 135 ? O GLU A 113 AA1 3 4 N TYR A 132 ? N TYR A 110 O VAL A 186 ? O VAL A 164 AA1 4 5 O MET A 185 ? O MET A 163 N ARG A 174 ? N ARG A 152 AA1 5 6 O LEU A 173 ? O LEU A 151 N ALA A 158 ? N ALA A 136 AA1 6 7 O HIS A 161 ? O HIS A 139 N GLU A 113 ? N GLU A 91 AA2 1 2 N ALA A 85 ? N ALA A 63 O HIS B 54 ? O HIS B 32 AA2 2 3 N HIS B 57 ? N HIS B 35 O GLY B 62 ? O GLY B 40 AA2 3 4 O ARG B 65 ? O ARG B 43 N VAL A 69 ? N VAL A 47 AA2 4 5 N GLY A 62 ? N GLY A 40 O HIS A 57 ? O HIS A 35 AA2 5 6 N HIS A 54 ? N HIS A 32 O ALA B 85 ? O ALA B 63 AA3 1 2 N LEU A 164 ? N LEU A 142 O LYS A 167 ? O LYS A 145 AA4 1 2 N GLY B 29 ? N GLY B 7 O VAL B 40 ? O VAL B 18 AA4 2 3 N LYS B 41 ? N LYS B 19 O GLU B 135 ? O GLU B 113 AA4 3 4 N TYR B 132 ? N TYR B 110 O VAL B 186 ? O VAL B 164 AA4 4 5 O MET B 185 ? O MET B 163 N ARG B 174 ? N ARG B 152 AA4 5 6 O LEU B 173 ? O LEU B 151 N ALA B 158 ? N ALA B 136 AA4 6 7 O MET B 157 ? O MET B 135 N VAL B 118 ? N VAL B 96 # _pdbx_entry_details.entry_id 8V53 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 10 ? ? "C1'" C DT 10 ? ? N1 C DT 10 ? ? 110.25 108.30 1.95 0.30 N 2 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 110.19 108.30 1.89 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 144 ? ? 54.60 15.27 2 1 PHE A 156 ? ? -99.21 35.61 3 1 GLU A 160 ? ? -92.33 52.87 4 1 ALA B 10 ? ? -97.66 35.07 5 1 ASP B 107 ? ? -93.82 -61.18 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8V53 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code AF-P9WKD9-F1 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8V53 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'Mean resolution obtained from ResMap: 3.4' _em_3d_reconstruction.resolution 4.1 _em_3d_reconstruction.resolution_method OTHER _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 110000 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '50mM HEPES, 150mM NaCl, 2mM TCEP' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Ku homodimer from M.tubeculosis in complex with hairpin DNA' _em_entity_assembly.details ;Protein: Ku homodimer was recombination purified DNA: Chemically Synthesized ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 2,3,1 # _em_imaging.entry_id 8V53 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8V53 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8V53 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8V53 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -21 ? A MET 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A HIS -19 ? A HIS 3 4 1 Y 1 A HIS -18 ? A HIS 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A HIS -11 ? A HIS 11 12 1 Y 1 A HIS -10 ? A HIS 12 13 1 Y 1 A SER -9 ? A SER 13 14 1 Y 1 A SER -8 ? A SER 14 15 1 Y 1 A GLY -7 ? A GLY 15 16 1 Y 1 A HIS -6 ? A HIS 16 17 1 Y 1 A ILE -5 ? A ILE 17 18 1 Y 1 A GLU -4 ? A GLU 18 19 1 Y 1 A GLY -3 ? A GLY 19 20 1 Y 1 A ARG -2 ? A ARG 20 21 1 Y 1 A HIS -1 ? A HIS 21 22 1 Y 1 A MET 0 ? A MET 22 23 1 Y 1 A LEU 227 ? A LEU 249 24 1 Y 1 A GLU 228 ? A GLU 250 25 1 Y 1 A GLY 229 ? A GLY 251 26 1 Y 1 A GLY 230 ? A GLY 252 27 1 Y 1 A GLN 231 ? A GLN 253 28 1 Y 1 A ALA 232 ? A ALA 254 29 1 Y 1 A PHE 233 ? A PHE 255 30 1 Y 1 A THR 234 ? A THR 256 31 1 Y 1 A ALA 235 ? A ALA 257 32 1 Y 1 A GLU 236 ? A GLU 258 33 1 Y 1 A ASP 237 ? A ASP 259 34 1 Y 1 A GLN 238 ? A GLN 260 35 1 Y 1 A PRO 239 ? A PRO 261 36 1 Y 1 A ARG 240 ? A ARG 262 37 1 Y 1 A LEU 241 ? A LEU 263 38 1 Y 1 A LEU 242 ? A LEU 264 39 1 Y 1 A ASP 243 ? A ASP 265 40 1 Y 1 A GLU 244 ? A GLU 266 41 1 Y 1 A PRO 245 ? A PRO 267 42 1 Y 1 A GLU 246 ? A GLU 268 43 1 Y 1 A ASP 247 ? A ASP 269 44 1 Y 1 A VAL 248 ? A VAL 270 45 1 Y 1 A SER 249 ? A SER 271 46 1 Y 1 A ASP 250 ? A ASP 272 47 1 Y 1 A LEU 251 ? A LEU 273 48 1 Y 1 A LEU 252 ? A LEU 274 49 1 Y 1 A ALA 253 ? A ALA 275 50 1 Y 1 A LYS 254 ? A LYS 276 51 1 Y 1 A LEU 255 ? A LEU 277 52 1 Y 1 A GLU 256 ? A GLU 278 53 1 Y 1 A ALA 257 ? A ALA 279 54 1 Y 1 A SER 258 ? A SER 280 55 1 Y 1 A VAL 259 ? A VAL 281 56 1 Y 1 A LYS 260 ? A LYS 282 57 1 Y 1 A ALA 261 ? A ALA 283 58 1 Y 1 A ARG 262 ? A ARG 284 59 1 Y 1 A SER 263 ? A SER 285 60 1 Y 1 A LYS 264 ? A LYS 286 61 1 Y 1 A ALA 265 ? A ALA 287 62 1 Y 1 A ASN 266 ? A ASN 288 63 1 Y 1 A SER 267 ? A SER 289 64 1 Y 1 A ASN 268 ? A ASN 290 65 1 Y 1 A VAL 269 ? A VAL 291 66 1 Y 1 A PRO 270 ? A PRO 292 67 1 Y 1 A THR 271 ? A THR 293 68 1 Y 1 A PRO 272 ? A PRO 294 69 1 Y 1 A PRO 273 ? A PRO 295 70 1 Y 1 B MET -21 ? B MET 1 71 1 Y 1 B GLY -20 ? B GLY 2 72 1 Y 1 B HIS -19 ? B HIS 3 73 1 Y 1 B HIS -18 ? B HIS 4 74 1 Y 1 B HIS -17 ? B HIS 5 75 1 Y 1 B HIS -16 ? B HIS 6 76 1 Y 1 B HIS -15 ? B HIS 7 77 1 Y 1 B HIS -14 ? B HIS 8 78 1 Y 1 B HIS -13 ? B HIS 9 79 1 Y 1 B HIS -12 ? B HIS 10 80 1 Y 1 B HIS -11 ? B HIS 11 81 1 Y 1 B HIS -10 ? B HIS 12 82 1 Y 1 B SER -9 ? B SER 13 83 1 Y 1 B SER -8 ? B SER 14 84 1 Y 1 B GLY -7 ? B GLY 15 85 1 Y 1 B HIS -6 ? B HIS 16 86 1 Y 1 B ILE -5 ? B ILE 17 87 1 Y 1 B GLU -4 ? B GLU 18 88 1 Y 1 B GLY -3 ? B GLY 19 89 1 Y 1 B ARG -2 ? B ARG 20 90 1 Y 1 B HIS -1 ? B HIS 21 91 1 Y 1 B MET 0 ? B MET 22 92 1 Y 1 B GLU 228 ? B GLU 250 93 1 Y 1 B GLY 229 ? B GLY 251 94 1 Y 1 B GLY 230 ? B GLY 252 95 1 Y 1 B GLN 231 ? B GLN 253 96 1 Y 1 B ALA 232 ? B ALA 254 97 1 Y 1 B PHE 233 ? B PHE 255 98 1 Y 1 B THR 234 ? B THR 256 99 1 Y 1 B ALA 235 ? B ALA 257 100 1 Y 1 B GLU 236 ? B GLU 258 101 1 Y 1 B ASP 237 ? B ASP 259 102 1 Y 1 B GLN 238 ? B GLN 260 103 1 Y 1 B PRO 239 ? B PRO 261 104 1 Y 1 B ARG 240 ? B ARG 262 105 1 Y 1 B LEU 241 ? B LEU 263 106 1 Y 1 B LEU 242 ? B LEU 264 107 1 Y 1 B ASP 243 ? B ASP 265 108 1 Y 1 B GLU 244 ? B GLU 266 109 1 Y 1 B PRO 245 ? B PRO 267 110 1 Y 1 B GLU 246 ? B GLU 268 111 1 Y 1 B ASP 247 ? B ASP 269 112 1 Y 1 B VAL 248 ? B VAL 270 113 1 Y 1 B SER 249 ? B SER 271 114 1 Y 1 B ASP 250 ? B ASP 272 115 1 Y 1 B LEU 251 ? B LEU 273 116 1 Y 1 B LEU 252 ? B LEU 274 117 1 Y 1 B ALA 253 ? B ALA 275 118 1 Y 1 B LYS 254 ? B LYS 276 119 1 Y 1 B LEU 255 ? B LEU 277 120 1 Y 1 B GLU 256 ? B GLU 278 121 1 Y 1 B ALA 257 ? B ALA 279 122 1 Y 1 B SER 258 ? B SER 280 123 1 Y 1 B VAL 259 ? B VAL 281 124 1 Y 1 B LYS 260 ? B LYS 282 125 1 Y 1 B ALA 261 ? B ALA 283 126 1 Y 1 B ARG 262 ? B ARG 284 127 1 Y 1 B SER 263 ? B SER 285 128 1 Y 1 B LYS 264 ? B LYS 286 129 1 Y 1 B ALA 265 ? B ALA 287 130 1 Y 1 B ASN 266 ? B ASN 288 131 1 Y 1 B SER 267 ? B SER 289 132 1 Y 1 B ASN 268 ? B ASN 290 133 1 Y 1 B VAL 269 ? B VAL 291 134 1 Y 1 B PRO 270 ? B PRO 292 135 1 Y 1 B THR 271 ? B THR 293 136 1 Y 1 B PRO 272 ? B PRO 294 137 1 Y 1 B PRO 273 ? B PRO 295 138 1 Y 1 C DG 17 ? C DG 17 139 1 Y 1 C DC 18 ? C DC 18 140 1 Y 1 C DG 19 ? C DG 19 141 1 Y 1 C DC 20 ? C DC 20 142 1 Y 1 C DG 21 ? C DG 21 143 1 Y 1 D DC -18 ? D DC 1 144 1 Y 1 D DG -17 ? D DG 2 145 1 Y 1 D DC -16 ? D DC 3 146 1 Y 1 D DG -15 ? D DG 4 147 1 Y 1 D DC -14 ? D DC 5 148 1 Y 1 D DC -13 ? D DC 6 149 1 Y 1 D DC -12 ? D DC 7 150 1 Y 1 D DA -11 ? D DA 8 151 1 Y 1 D DG -10 ? D DG 9 152 1 Y 1 D DC -9 ? D DC 10 153 1 Y 1 D DT -8 ? D DT 11 154 1 Y 1 D DT -7 ? D DT 12 155 1 Y 1 D DT -6 ? D DT 13 156 1 Y 1 D DC -5 ? D DC 14 157 1 Y 1 D DC -4 ? D DC 15 158 1 Y 1 D DC -3 ? D DC 16 159 1 Y 1 D DA -2 ? D DA 17 160 1 Y 1 D DG -1 ? D DG 18 161 1 Y 1 D DC 0 ? D DC 19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # _em_admin.current_status REL _em_admin.deposition_date 2023-11-30 _em_admin.deposition_site RCSB _em_admin.entry_id 8V53 _em_admin.last_update 2025-12-10 _em_admin.map_release_date 2025-12-10 _em_admin.title 'CryoEM structure of Ku homodimer in complex with hairpin DNA' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 50 mM ? 1 'HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid)' 1 150 mM ? 2 'Sodium chloride' 1 2 mM ? 3 'Tris(2-carboxyethyl)phosphine hydrochloride' # _em_ctf_correction.details 'Peformed in CryoSPARC Patch CTF' _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 83332 _em_entity_assembly_naturalsource.organism 'Mycobacterium tuberculosis H37Rv' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 6151 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5291688 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' 'Rigid body fit' 7 ? 1 ? 'UCSF ChimeraX' ? 'MODEL FITTING' 'Rigid body fit' 8 ? 1 ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'MODEL REFINEMENT' ? 10 ? 1 ? PHENIX ? 'MODEL REFINEMENT' ? 11 ? 1 ? Coot ? 'INITIAL EULER ASSIGNMENT' ? 12 1 ? ? cryoSPARC ? 'FINAL EULER ASSIGNMENT' ? 13 1 ? ? cryoSPARC ? CLASSIFICATION ? 14 1 ? ? cryoSPARC ? RECONSTRUCTION ? 15 1 ? ? cryoSPARC ? # _em_specimen.concentration 0.17 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _ndb_struct_conf_na.entry_id 8V53 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 D DC 34 1_555 2.966 0.481 -0.377 2.109 7.687 0.771 1 C_DG1:DC15_D C 1 ? D 15 ? ? ? 1 C DT 2 1_555 D DA 33 1_555 2.579 -0.466 0.357 13.515 3.994 -5.653 2 C_DT2:DA14_D C 2 ? D 14 ? ? ? 1 C DT 4 1_555 D DA 31 1_555 -1.633 -0.167 1.331 5.087 -0.564 -25.831 3 C_DT4:DA12_D C 4 ? D 12 ? 20 1 1 C DT 5 1_555 D DA 30 1_555 -1.402 0.049 0.891 9.866 -1.494 -18.957 4 C_DT5:DA11_D C 5 ? D 11 ? 20 1 1 C DT 6 1_555 D DA 29 1_555 -0.139 -0.236 0.844 5.061 -2.642 -4.048 5 C_DT6:DA10_D C 6 ? D 10 ? 20 1 1 C DA 7 1_555 D DT 28 1_555 2.097 0.145 0.720 4.318 -5.954 -10.548 6 C_DA7:DT9_D C 7 ? D 9 ? 20 1 1 C DG 8 1_555 D DC 27 1_555 1.595 0.961 0.024 -0.718 3.199 16.760 7 C_DG8:DC8_D C 8 ? D 8 ? ? 1 1 C DT 9 1_555 D DA 26 1_555 -0.747 0.739 -0.242 3.514 5.876 8.677 8 C_DT9:DA7_D C 9 ? D 7 ? ? ? 1 C DT 11 1_555 D DA 24 1_555 -0.583 0.344 -0.403 20.106 -1.294 3.444 9 C_DT11:DA5_D C 11 ? D 5 ? 20 1 1 C DA 12 1_555 D DT 23 1_555 0.076 -0.143 -0.577 17.138 -2.029 -2.392 10 C_DA12:DT4_D C 12 ? D 4 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 D DC 34 1_555 C DT 2 1_555 D DA 33 1_555 -0.706 -0.483 3.474 1.946 2.003 27.763 -1.503 1.951 3.375 4.162 -4.042 27.900 1 CC_DG1DT2:DA14DC15_DD C 1 ? D 15 ? C 2 ? D 14 ? 1 C DT 2 1_555 D DA 33 1_555 C DT 4 1_555 D DA 31 1_555 1.323 -0.417 6.877 9.753 4.813 48.934 -1.238 -0.056 6.937 5.729 -11.608 50.056 2 CC_DT2DT4:DA12DA14_DD C 2 ? D 14 ? C 4 ? D 12 ? 1 C DT 4 1_555 D DA 31 1_555 C DT 5 1_555 D DA 30 1_555 0.255 -1.358 3.076 2.218 3.331 35.666 -2.645 -0.121 2.951 5.417 -3.607 35.882 3 CC_DT4DT5:DA11DA12_DD C 4 ? D 12 ? C 5 ? D 11 ? 1 C DT 5 1_555 D DA 30 1_555 C DT 6 1_555 D DA 29 1_555 0.965 -0.671 3.351 2.233 1.957 38.426 -1.266 -1.178 3.363 2.967 -3.386 38.536 4 CC_DT5DT6:DA10DA11_DD C 5 ? D 11 ? C 6 ? D 10 ? 1 C DT 6 1_555 D DA 29 1_555 C DA 7 1_555 D DT 28 1_555 -0.682 -0.031 3.153 0.947 2.312 47.071 -0.221 0.928 3.135 2.892 -1.185 47.134 5 CC_DT6DA7:DT9DA10_DD C 6 ? D 10 ? C 7 ? D 9 ? 1 C DA 7 1_555 D DT 28 1_555 C DG 8 1_555 D DC 27 1_555 0.632 -0.561 3.301 2.731 -1.269 33.533 -0.757 -0.637 3.358 -2.194 -4.721 33.664 6 CC_DA7DG8:DC8DT9_DD C 7 ? D 9 ? C 8 ? D 8 ? 1 C DG 8 1_555 D DC 27 1_555 C DT 9 1_555 D DA 26 1_555 -0.160 -1.080 3.098 2.322 1.937 18.101 -4.381 1.694 2.923 6.102 -7.314 18.350 7 CC_DG8DT9:DA7DC8_DD C 8 ? D 8 ? C 9 ? D 7 ? 1 C DT 9 1_555 D DA 26 1_555 C DT 11 1_555 D DA 24 1_555 0.129 -0.241 5.929 -0.227 10.635 65.822 -0.983 -0.134 5.835 9.721 0.208 66.580 8 CC_DT9DT11:DA5DA7_DD C 9 ? D 7 ? C 11 ? D 5 ? 1 C DT 11 1_555 D DA 24 1_555 C DA 12 1_555 D DT 23 1_555 -0.637 0.565 3.235 -1.134 5.161 39.486 0.231 0.803 3.296 7.597 1.669 39.824 9 CC_DT11DA12:DT4DA5_DD C 11 ? D 5 ? C 12 ? D 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Health and Medical Research Council (NHMRC, Australia)' Australia APP2000934 1 'Science and Engineering Research Board (SERB)' India CRG/2020/002622 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code AF-P9WKD9-F1 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8V53 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #