data_8V58 # _entry.id 8V58 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8V58 pdb_00008v58 10.2210/pdb8v58/pdb WWPDB D_1000279556 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8V58 _pdbx_database_status.recvd_initial_deposition_date 2023-11-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email pederse2@niehs.nih.gov _pdbx_contact_author.name_first Lars _pdbx_contact_author.name_last Pedersen _pdbx_contact_author.name_mi C. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4488-4077 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pedersen, L.C.' 1 ? 'Xu, D.' 2 ? 'Krahn, J.M.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Matrix Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0945-053X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 129 _citation.language ? _citation.page_first 15 _citation.page_last 28 _citation.title 'Heparan sulfate selectively inhibits the collagenase activity of cathepsin K.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.matbio.2024.03.005 _citation.pdbx_database_id_PubMed 38548090 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, X.' 1 ? primary 'Luo, Y.' 2 ? primary 'Hao, H.' 3 ? primary 'Krahn, J.M.' 4 ? primary 'Su, G.' 5 ? primary 'Dutcher, R.' 6 ? primary 'Xu, Y.' 7 ? primary 'Liu, J.' 8 ? primary 'Pedersen, L.C.' 9 ? primary 'Xu, D.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin K' 23662.637 2 ? ? ? ? 2 branched man ;beta-D-galactopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1381.245 1 ? ? ? ? 3 branched syn ;2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid ; 2649.180 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQN GGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRD NVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;GRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQN GGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRD NVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFPKM ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 1,2-ETHANEDIOL EDO 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 VAL n 1 4 PRO n 1 5 ASP n 1 6 SER n 1 7 ILE n 1 8 ASP n 1 9 TYR n 1 10 ARG n 1 11 LYS n 1 12 LYS n 1 13 GLY n 1 14 TYR n 1 15 VAL n 1 16 THR n 1 17 PRO n 1 18 VAL n 1 19 LYS n 1 20 ASN n 1 21 GLN n 1 22 GLY n 1 23 GLN n 1 24 CYS n 1 25 GLY n 1 26 SER n 1 27 CYS n 1 28 TRP n 1 29 ALA n 1 30 PHE n 1 31 SER n 1 32 SER n 1 33 ALA n 1 34 GLY n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 GLY n 1 39 GLN n 1 40 LEU n 1 41 LYS n 1 42 LYS n 1 43 LYS n 1 44 THR n 1 45 GLY n 1 46 LYS n 1 47 LEU n 1 48 LEU n 1 49 ALA n 1 50 LEU n 1 51 SER n 1 52 PRO n 1 53 GLN n 1 54 ASN n 1 55 LEU n 1 56 VAL n 1 57 ASP n 1 58 CYS n 1 59 VAL n 1 60 THR n 1 61 GLU n 1 62 ASN n 1 63 TYR n 1 64 GLY n 1 65 CYS n 1 66 GLY n 1 67 GLY n 1 68 GLY n 1 69 TYR n 1 70 MET n 1 71 THR n 1 72 THR n 1 73 ALA n 1 74 PHE n 1 75 GLN n 1 76 TYR n 1 77 VAL n 1 78 GLN n 1 79 GLN n 1 80 ASN n 1 81 GLY n 1 82 GLY n 1 83 ILE n 1 84 ASP n 1 85 SER n 1 86 GLU n 1 87 ASP n 1 88 ALA n 1 89 TYR n 1 90 PRO n 1 91 TYR n 1 92 VAL n 1 93 GLY n 1 94 GLN n 1 95 ASP n 1 96 GLU n 1 97 SER n 1 98 CYS n 1 99 MET n 1 100 TYR n 1 101 ASN n 1 102 ALA n 1 103 THR n 1 104 ALA n 1 105 LYS n 1 106 ALA n 1 107 ALA n 1 108 LYS n 1 109 CYS n 1 110 ARG n 1 111 GLY n 1 112 TYR n 1 113 ARG n 1 114 GLU n 1 115 ILE n 1 116 PRO n 1 117 VAL n 1 118 GLY n 1 119 ASN n 1 120 GLU n 1 121 LYS n 1 122 ALA n 1 123 LEU n 1 124 LYS n 1 125 ARG n 1 126 ALA n 1 127 VAL n 1 128 ALA n 1 129 ARG n 1 130 VAL n 1 131 GLY n 1 132 PRO n 1 133 ILE n 1 134 SER n 1 135 VAL n 1 136 SER n 1 137 ILE n 1 138 ASP n 1 139 ALA n 1 140 SER n 1 141 LEU n 1 142 ALA n 1 143 SER n 1 144 PHE n 1 145 GLN n 1 146 PHE n 1 147 TYR n 1 148 SER n 1 149 ARG n 1 150 GLY n 1 151 VAL n 1 152 TYR n 1 153 TYR n 1 154 ASP n 1 155 GLU n 1 156 ASN n 1 157 CYS n 1 158 ASP n 1 159 ARG n 1 160 ASP n 1 161 ASN n 1 162 VAL n 1 163 ASN n 1 164 HIS n 1 165 ALA n 1 166 VAL n 1 167 LEU n 1 168 VAL n 1 169 VAL n 1 170 GLY n 1 171 TYR n 1 172 GLY n 1 173 THR n 1 174 GLN n 1 175 LYS n 1 176 GLY n 1 177 SER n 1 178 LYS n 1 179 HIS n 1 180 TRP n 1 181 ILE n 1 182 ILE n 1 183 LYS n 1 184 ASN n 1 185 SER n 1 186 TRP n 1 187 GLY n 1 188 GLU n 1 189 SER n 1 190 TRP n 1 191 GLY n 1 192 ASN n 1 193 LYS n 1 194 GLY n 1 195 TYR n 1 196 ALA n 1 197 LEU n 1 198 LEU n 1 199 ALA n 1 200 ARG n 1 201 ASN n 1 202 LYS n 1 203 ASN n 1 204 ASN n 1 205 ALA n 1 206 CYS n 1 207 GLY n 1 208 ILE n 1 209 THR n 1 210 ASN n 1 211 MET n 1 212 ALA n 1 213 SER n 1 214 PHE n 1 215 PRO n 1 216 LYS n 1 217 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 217 _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Ctsk _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HEK293 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293-freestyle _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGalpb1-4DManpa1-4DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 ;WURCS=2.0/5,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-3-3-4-5/a4-b1_a6-h1_b4-c1_c3-d1_c6-e1_e4-f1_f4-g1 ; WURCS PDB2Glycan 1.1.0 3 2 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(4+1)][a-D-Manp]{[(4+1)][b-D-Galp]{}}}}}[(6+1)][a-L-Fucp]{}}} ; LINUCS PDB-CARE ? 4 3 ;WURCS=2.0/2,8,7/[a2121A-1a_1-5_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O]/1-2-1-2-1-2-1-2/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1 ; WURCS PDB2Glycan 1.1.0 5 3 ;[][L-1,6-deoxy-Idop2SO3]{[(4+1)][a-D-2-deoxy-Glcp6SO3]{[(4+1)][a-L-6-deoxy-Idop2SO3]{[(4+1)][a-D-2-deoxy-Glcp6SO3]{[(4+1)][a-L-6-deoxy-Idop2SO3]{[(4+1)][a-D-2-deoxy-Glcp6SO3]{[(4+1)][a-L-6-deoxy-Idop2SO3]{[(4+1)][a-D-2-deoxy-Glcp6SO3]{}}}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O6 HO6 sing ? 4 2 5 MAN C1 O1 4 MAN O4 HO4 sing ? 5 2 6 GAL C1 O1 5 MAN O4 HO4 sing ? 6 2 7 MAN C1 O1 3 BMA O3 HO3 sing ? 7 2 8 FUC C1 O1 1 NAG O6 HO6 sing ? 8 3 2 IDS C1 O1 1 SGN O4 HO4 sing ? 9 3 3 SGN C1 O1 2 IDS O4 HO4 sing ? 10 3 4 IDS C1 O1 3 SGN O4 HO4 sing ? 11 3 5 SGN C1 O1 4 IDS O4 HO4 sing ? 12 3 6 IDS C1 O1 5 SGN O4 HO4 sing ? 13 3 7 SGN C1 O1 6 IDS O4 HO4 sing ? 14 3 8 IDS C1 O1 7 SGN O4 HO4 sing ? 15 3 9 SGN C1 O1 8 IDS O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 IDS 'L-saccharide, alpha linking' n '2-O-sulfo-alpha-L-idopyranuronic acid' 'O2-SULFO-GLUCURONIC ACID; 2-O-sulfo-alpha-L-iduronic acid; 2-O-sulfo-L-iduronic acid; 2-O-sulfo-iduronic acid' 'C6 H10 O10 S' 274.203 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SGN 'D-saccharide, alpha linking' n '2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose' ;N,O6-DISULFO-GLUCOSAMINE; 6-O-sulfo-N-sulfo-alpha-D-glucosamine; 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose ; 'C6 H13 N O11 S2' 339.298 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal IDS 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-IdopA2SO3 MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc SGN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcpNS[6S]a' SGN 'COMMON NAME' GMML 1.0 N-sulfo-6-sulfo-a-D-glucopyranose SGN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNSO36SO3 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 ARG 2 0 ? ? ? A . n A 1 3 VAL 3 1 1 VAL VAL A . n A 1 4 PRO 4 2 2 PRO PRO A . n A 1 5 ASP 5 3 3 ASP ASP A . n A 1 6 SER 6 4 4 SER SER A . n A 1 7 ILE 7 5 5 ILE ILE A . n A 1 8 ASP 8 6 6 ASP ASP A . n A 1 9 TYR 9 7 7 TYR TYR A . n A 1 10 ARG 10 8 8 ARG ARG A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 LYS 12 10 10 LYS LYS A . n A 1 13 GLY 13 11 11 GLY GLY A . n A 1 14 TYR 14 12 12 TYR TYR A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 THR 16 14 14 THR THR A . n A 1 17 PRO 17 15 15 PRO PRO A . n A 1 18 VAL 18 16 16 VAL VAL A . n A 1 19 LYS 19 17 17 LYS LYS A . n A 1 20 ASN 20 18 18 ASN ASN A . n A 1 21 GLN 21 19 19 GLN GLN A . n A 1 22 GLY 22 20 20 GLY GLY A . n A 1 23 GLN 23 21 21 GLN GLN A . n A 1 24 CYS 24 22 22 CYS CYS A . n A 1 25 GLY 25 23 23 GLY GLY A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 CYS 27 25 25 CYS CYS A . n A 1 28 TRP 28 26 26 TRP TRP A . n A 1 29 ALA 29 27 27 ALA ALA A . n A 1 30 PHE 30 28 28 PHE PHE A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 SER 32 30 30 SER SER A . n A 1 33 ALA 33 31 31 ALA ALA A . n A 1 34 GLY 34 32 32 GLY GLY A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 LEU 36 34 34 LEU LEU A . n A 1 37 GLU 37 35 35 GLU GLU A . n A 1 38 GLY 38 36 36 GLY GLY A . n A 1 39 GLN 39 37 37 GLN GLN A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 LYS 41 39 39 LYS LYS A . n A 1 42 LYS 42 40 40 LYS LYS A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 THR 44 42 42 THR THR A . n A 1 45 GLY 45 43 43 GLY GLY A . n A 1 46 LYS 46 44 44 LYS LYS A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 LEU 48 46 46 LEU LEU A . n A 1 49 ALA 49 47 47 ALA ALA A . n A 1 50 LEU 50 48 48 LEU LEU A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 PRO 52 50 50 PRO PRO A . n A 1 53 GLN 53 51 51 GLN GLN A . n A 1 54 ASN 54 52 52 ASN ASN A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 VAL 56 54 54 VAL VAL A . n A 1 57 ASP 57 55 55 ASP ASP A . n A 1 58 CYS 58 56 56 CYS CYS A . n A 1 59 VAL 59 57 57 VAL VAL A . n A 1 60 THR 60 58 58 THR THR A . n A 1 61 GLU 61 59 59 GLU GLU A . n A 1 62 ASN 62 60 60 ASN ASN A . n A 1 63 TYR 63 61 61 TYR TYR A . n A 1 64 GLY 64 62 62 GLY GLY A . n A 1 65 CYS 65 63 63 CYS CYS A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 GLY 67 65 65 GLY GLY A . n A 1 68 GLY 68 66 66 GLY GLY A . n A 1 69 TYR 69 67 67 TYR TYR A . n A 1 70 MET 70 68 68 MET MET A . n A 1 71 THR 71 69 69 THR THR A . n A 1 72 THR 72 70 70 THR THR A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 PHE 74 72 72 PHE PHE A . n A 1 75 GLN 75 73 73 GLN GLN A . n A 1 76 TYR 76 74 74 TYR TYR A . n A 1 77 VAL 77 75 75 VAL VAL A . n A 1 78 GLN 78 76 76 GLN GLN A . n A 1 79 GLN 79 77 77 GLN GLN A . n A 1 80 ASN 80 78 78 ASN ASN A . n A 1 81 GLY 81 79 79 GLY GLY A . n A 1 82 GLY 82 80 80 GLY GLY A . n A 1 83 ILE 83 81 81 ILE ILE A . n A 1 84 ASP 84 82 82 ASP ASP A . n A 1 85 SER 85 83 83 SER SER A . n A 1 86 GLU 86 84 84 GLU GLU A . n A 1 87 ASP 87 85 85 ASP ASP A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 TYR 89 87 87 TYR TYR A . n A 1 90 PRO 90 88 88 PRO PRO A . n A 1 91 TYR 91 89 89 TYR TYR A . n A 1 92 VAL 92 90 90 VAL VAL A . n A 1 93 GLY 93 91 91 GLY GLY A . n A 1 94 GLN 94 92 92 GLN GLN A . n A 1 95 ASP 95 93 93 ASP ASP A . n A 1 96 GLU 96 94 94 GLU GLU A . n A 1 97 SER 97 95 95 SER SER A . n A 1 98 CYS 98 96 96 CYS CYS A . n A 1 99 MET 99 97 97 MET MET A . n A 1 100 TYR 100 98 98 TYR TYR A . n A 1 101 ASN 101 99 99 ASN ASN A . n A 1 102 ALA 102 100 100 ALA ALA A . n A 1 103 THR 103 101 101 THR THR A . n A 1 104 ALA 104 102 102 ALA ALA A . n A 1 105 LYS 105 103 103 LYS LYS A . n A 1 106 ALA 106 104 104 ALA ALA A . n A 1 107 ALA 107 105 105 ALA ALA A . n A 1 108 LYS 108 106 106 LYS LYS A . n A 1 109 CYS 109 107 107 CYS CYS A . n A 1 110 ARG 110 108 108 ARG ARG A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 TYR 112 110 110 TYR TYR A . n A 1 113 ARG 113 111 111 ARG ARG A . n A 1 114 GLU 114 112 112 GLU GLU A . n A 1 115 ILE 115 113 113 ILE ILE A . n A 1 116 PRO 116 114 114 PRO PRO A . n A 1 117 VAL 117 115 115 VAL VAL A . n A 1 118 GLY 118 116 116 GLY GLY A . n A 1 119 ASN 119 117 117 ASN ASN A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 LYS 121 119 119 LYS LYS A . n A 1 122 ALA 122 120 120 ALA ALA A . n A 1 123 LEU 123 121 121 LEU LEU A . n A 1 124 LYS 124 122 122 LYS LYS A . n A 1 125 ARG 125 123 123 ARG ARG A . n A 1 126 ALA 126 124 124 ALA ALA A . n A 1 127 VAL 127 125 125 VAL VAL A . n A 1 128 ALA 128 126 126 ALA ALA A . n A 1 129 ARG 129 127 127 ARG ARG A . n A 1 130 VAL 130 128 128 VAL VAL A . n A 1 131 GLY 131 129 129 GLY GLY A . n A 1 132 PRO 132 130 130 PRO PRO A . n A 1 133 ILE 133 131 131 ILE ILE A . n A 1 134 SER 134 132 132 SER SER A . n A 1 135 VAL 135 133 133 VAL VAL A . n A 1 136 SER 136 134 134 SER SER A . n A 1 137 ILE 137 135 135 ILE ILE A . n A 1 138 ASP 138 136 136 ASP ASP A . n A 1 139 ALA 139 137 137 ALA ALA A . n A 1 140 SER 140 138 138 SER SER A . n A 1 141 LEU 141 139 139 LEU LEU A . n A 1 142 ALA 142 140 140 ALA ALA A . n A 1 143 SER 143 141 141 SER SER A . n A 1 144 PHE 144 142 142 PHE PHE A . n A 1 145 GLN 145 143 143 GLN GLN A . n A 1 146 PHE 146 144 144 PHE PHE A . n A 1 147 TYR 147 145 145 TYR TYR A . n A 1 148 SER 148 146 146 SER SER A . n A 1 149 ARG 149 147 147 ARG ARG A . n A 1 150 GLY 150 148 148 GLY GLY A . n A 1 151 VAL 151 149 149 VAL VAL A . n A 1 152 TYR 152 150 150 TYR TYR A . n A 1 153 TYR 153 151 151 TYR TYR A . n A 1 154 ASP 154 152 152 ASP ASP A . n A 1 155 GLU 155 153 153 GLU GLU A . n A 1 156 ASN 156 154 154 ASN ASN A . n A 1 157 CYS 157 155 155 CYS CYS A . n A 1 158 ASP 158 156 156 ASP ASP A . n A 1 159 ARG 159 157 157 ARG ARG A . n A 1 160 ASP 160 158 158 ASP ASP A . n A 1 161 ASN 161 159 159 ASN ASN A . n A 1 162 VAL 162 160 160 VAL VAL A . n A 1 163 ASN 163 161 161 ASN ASN A . n A 1 164 HIS 164 162 162 HIS HIS A . n A 1 165 ALA 165 163 163 ALA ALA A . n A 1 166 VAL 166 164 164 VAL VAL A . n A 1 167 LEU 167 165 165 LEU LEU A . n A 1 168 VAL 168 166 166 VAL VAL A . n A 1 169 VAL 169 167 167 VAL VAL A . n A 1 170 GLY 170 168 168 GLY GLY A . n A 1 171 TYR 171 169 169 TYR TYR A . n A 1 172 GLY 172 170 170 GLY GLY A . n A 1 173 THR 173 171 171 THR THR A . n A 1 174 GLN 174 172 172 GLN GLN A . n A 1 175 LYS 175 173 173 LYS LYS A . n A 1 176 GLY 176 174 174 GLY GLY A . n A 1 177 SER 177 175 175 SER SER A . n A 1 178 LYS 178 176 176 LYS LYS A . n A 1 179 HIS 179 177 177 HIS HIS A . n A 1 180 TRP 180 178 178 TRP TRP A . n A 1 181 ILE 181 179 179 ILE ILE A . n A 1 182 ILE 182 180 180 ILE ILE A . n A 1 183 LYS 183 181 181 LYS LYS A . n A 1 184 ASN 184 182 182 ASN ASN A . n A 1 185 SER 185 183 183 SER SER A . n A 1 186 TRP 186 184 184 TRP TRP A . n A 1 187 GLY 187 185 185 GLY GLY A . n A 1 188 GLU 188 186 186 GLU GLU A . n A 1 189 SER 189 187 187 SER SER A . n A 1 190 TRP 190 188 188 TRP TRP A . n A 1 191 GLY 191 189 189 GLY GLY A . n A 1 192 ASN 192 190 190 ASN ASN A . n A 1 193 LYS 193 191 191 LYS LYS A . n A 1 194 GLY 194 192 192 GLY GLY A . n A 1 195 TYR 195 193 193 TYR TYR A . n A 1 196 ALA 196 194 194 ALA ALA A . n A 1 197 LEU 197 195 195 LEU LEU A . n A 1 198 LEU 198 196 196 LEU LEU A . n A 1 199 ALA 199 197 197 ALA ALA A . n A 1 200 ARG 200 198 198 ARG ARG A . n A 1 201 ASN 201 199 199 ASN ASN A . n A 1 202 LYS 202 200 200 LYS LYS A . n A 1 203 ASN 203 201 201 ASN ASN A . n A 1 204 ASN 204 202 202 ASN ASN A . n A 1 205 ALA 205 203 203 ALA ALA A . n A 1 206 CYS 206 204 204 CYS CYS A . n A 1 207 GLY 207 205 205 GLY GLY A . n A 1 208 ILE 208 206 206 ILE ILE A . n A 1 209 THR 209 207 207 THR THR A . n A 1 210 ASN 210 208 208 ASN ASN A . n A 1 211 MET 211 209 209 MET MET A . n A 1 212 ALA 212 210 210 ALA ALA A . n A 1 213 SER 213 211 211 SER SER A . n A 1 214 PHE 214 212 212 PHE PHE A . n A 1 215 PRO 215 213 213 PRO PRO A . n A 1 216 LYS 216 214 214 LYS LYS A . n A 1 217 MET 217 215 215 MET MET A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 ARG 2 0 ? ? ? B . n B 1 3 VAL 3 1 1 VAL VAL B . n B 1 4 PRO 4 2 2 PRO PRO B . n B 1 5 ASP 5 3 3 ASP ASP B . n B 1 6 SER 6 4 4 SER SER B . n B 1 7 ILE 7 5 5 ILE ILE B . n B 1 8 ASP 8 6 6 ASP ASP B . n B 1 9 TYR 9 7 7 TYR TYR B . n B 1 10 ARG 10 8 8 ARG ARG B . n B 1 11 LYS 11 9 9 LYS LYS B . n B 1 12 LYS 12 10 10 LYS LYS B . n B 1 13 GLY 13 11 11 GLY GLY B . n B 1 14 TYR 14 12 12 TYR TYR B . n B 1 15 VAL 15 13 13 VAL VAL B . n B 1 16 THR 16 14 14 THR THR B . n B 1 17 PRO 17 15 15 PRO PRO B . n B 1 18 VAL 18 16 16 VAL VAL B . n B 1 19 LYS 19 17 17 LYS LYS B . n B 1 20 ASN 20 18 18 ASN ASN B . n B 1 21 GLN 21 19 19 GLN GLN B . n B 1 22 GLY 22 20 20 GLY GLY B . n B 1 23 GLN 23 21 21 GLN GLN B . n B 1 24 CYS 24 22 22 CYS CYS B . n B 1 25 GLY 25 23 23 GLY GLY B . n B 1 26 SER 26 24 24 SER SER B . n B 1 27 CYS 27 25 25 CYS CYS B . n B 1 28 TRP 28 26 26 TRP TRP B . n B 1 29 ALA 29 27 27 ALA ALA B . n B 1 30 PHE 30 28 28 PHE PHE B . n B 1 31 SER 31 29 29 SER SER B . n B 1 32 SER 32 30 30 SER SER B . n B 1 33 ALA 33 31 31 ALA ALA B . n B 1 34 GLY 34 32 32 GLY GLY B . n B 1 35 ALA 35 33 33 ALA ALA B . n B 1 36 LEU 36 34 34 LEU LEU B . n B 1 37 GLU 37 35 35 GLU GLU B . n B 1 38 GLY 38 36 36 GLY GLY B . n B 1 39 GLN 39 37 37 GLN GLN B . n B 1 40 LEU 40 38 38 LEU LEU B . n B 1 41 LYS 41 39 39 LYS LYS B . n B 1 42 LYS 42 40 40 LYS LYS B . n B 1 43 LYS 43 41 41 LYS LYS B . n B 1 44 THR 44 42 42 THR THR B . n B 1 45 GLY 45 43 43 GLY GLY B . n B 1 46 LYS 46 44 44 LYS LYS B . n B 1 47 LEU 47 45 45 LEU LEU B . n B 1 48 LEU 48 46 46 LEU LEU B . n B 1 49 ALA 49 47 47 ALA ALA B . n B 1 50 LEU 50 48 48 LEU LEU B . n B 1 51 SER 51 49 49 SER SER B . n B 1 52 PRO 52 50 50 PRO PRO B . n B 1 53 GLN 53 51 51 GLN GLN B . n B 1 54 ASN 54 52 52 ASN ASN B . n B 1 55 LEU 55 53 53 LEU LEU B . n B 1 56 VAL 56 54 54 VAL VAL B . n B 1 57 ASP 57 55 55 ASP ASP B . n B 1 58 CYS 58 56 56 CYS CYS B . n B 1 59 VAL 59 57 57 VAL VAL B . n B 1 60 THR 60 58 58 THR THR B . n B 1 61 GLU 61 59 59 GLU GLU B . n B 1 62 ASN 62 60 60 ASN ASN B . n B 1 63 TYR 63 61 61 TYR TYR B . n B 1 64 GLY 64 62 62 GLY GLY B . n B 1 65 CYS 65 63 63 CYS CYS B . n B 1 66 GLY 66 64 64 GLY GLY B . n B 1 67 GLY 67 65 65 GLY GLY B . n B 1 68 GLY 68 66 66 GLY GLY B . n B 1 69 TYR 69 67 67 TYR TYR B . n B 1 70 MET 70 68 68 MET MET B . n B 1 71 THR 71 69 69 THR THR B . n B 1 72 THR 72 70 70 THR THR B . n B 1 73 ALA 73 71 71 ALA ALA B . n B 1 74 PHE 74 72 72 PHE PHE B . n B 1 75 GLN 75 73 73 GLN GLN B . n B 1 76 TYR 76 74 74 TYR TYR B . n B 1 77 VAL 77 75 75 VAL VAL B . n B 1 78 GLN 78 76 76 GLN GLN B . n B 1 79 GLN 79 77 77 GLN GLN B . n B 1 80 ASN 80 78 78 ASN ASN B . n B 1 81 GLY 81 79 79 GLY GLY B . n B 1 82 GLY 82 80 80 GLY GLY B . n B 1 83 ILE 83 81 81 ILE ILE B . n B 1 84 ASP 84 82 82 ASP ASP B . n B 1 85 SER 85 83 83 SER SER B . n B 1 86 GLU 86 84 84 GLU GLU B . n B 1 87 ASP 87 85 85 ASP ASP B . n B 1 88 ALA 88 86 86 ALA ALA B . n B 1 89 TYR 89 87 87 TYR TYR B . n B 1 90 PRO 90 88 88 PRO PRO B . n B 1 91 TYR 91 89 89 TYR TYR B . n B 1 92 VAL 92 90 90 VAL VAL B . n B 1 93 GLY 93 91 91 GLY GLY B . n B 1 94 GLN 94 92 92 GLN GLN B . n B 1 95 ASP 95 93 93 ASP ASP B . n B 1 96 GLU 96 94 94 GLU GLU B . n B 1 97 SER 97 95 95 SER SER B . n B 1 98 CYS 98 96 96 CYS CYS B . n B 1 99 MET 99 97 97 MET MET B . n B 1 100 TYR 100 98 98 TYR TYR B . n B 1 101 ASN 101 99 99 ASN ASN B . n B 1 102 ALA 102 100 100 ALA ALA B . n B 1 103 THR 103 101 101 THR THR B . n B 1 104 ALA 104 102 102 ALA ALA B . n B 1 105 LYS 105 103 103 LYS LYS B . n B 1 106 ALA 106 104 104 ALA ALA B . n B 1 107 ALA 107 105 105 ALA ALA B . n B 1 108 LYS 108 106 106 LYS LYS B . n B 1 109 CYS 109 107 107 CYS CYS B . n B 1 110 ARG 110 108 108 ARG ARG B . n B 1 111 GLY 111 109 109 GLY GLY B . n B 1 112 TYR 112 110 110 TYR TYR B . n B 1 113 ARG 113 111 111 ARG ARG B . n B 1 114 GLU 114 112 112 GLU GLU B . n B 1 115 ILE 115 113 113 ILE ILE B . n B 1 116 PRO 116 114 114 PRO PRO B . n B 1 117 VAL 117 115 115 VAL VAL B . n B 1 118 GLY 118 116 116 GLY GLY B . n B 1 119 ASN 119 117 117 ASN ASN B . n B 1 120 GLU 120 118 118 GLU GLU B . n B 1 121 LYS 121 119 119 LYS LYS B . n B 1 122 ALA 122 120 120 ALA ALA B . n B 1 123 LEU 123 121 121 LEU LEU B . n B 1 124 LYS 124 122 122 LYS LYS B . n B 1 125 ARG 125 123 123 ARG ARG B . n B 1 126 ALA 126 124 124 ALA ALA B . n B 1 127 VAL 127 125 125 VAL VAL B . n B 1 128 ALA 128 126 126 ALA ALA B . n B 1 129 ARG 129 127 127 ARG ARG B . n B 1 130 VAL 130 128 128 VAL VAL B . n B 1 131 GLY 131 129 129 GLY GLY B . n B 1 132 PRO 132 130 130 PRO PRO B . n B 1 133 ILE 133 131 131 ILE ILE B . n B 1 134 SER 134 132 132 SER SER B . n B 1 135 VAL 135 133 133 VAL VAL B . n B 1 136 SER 136 134 134 SER SER B . n B 1 137 ILE 137 135 135 ILE ILE B . n B 1 138 ASP 138 136 136 ASP ASP B . n B 1 139 ALA 139 137 137 ALA ALA B . n B 1 140 SER 140 138 138 SER SER B . n B 1 141 LEU 141 139 139 LEU LEU B . n B 1 142 ALA 142 140 140 ALA ALA B . n B 1 143 SER 143 141 141 SER SER B . n B 1 144 PHE 144 142 142 PHE PHE B . n B 1 145 GLN 145 143 143 GLN GLN B . n B 1 146 PHE 146 144 144 PHE PHE B . n B 1 147 TYR 147 145 145 TYR TYR B . n B 1 148 SER 148 146 146 SER SER B . n B 1 149 ARG 149 147 147 ARG ARG B . n B 1 150 GLY 150 148 148 GLY GLY B . n B 1 151 VAL 151 149 149 VAL VAL B . n B 1 152 TYR 152 150 150 TYR TYR B . n B 1 153 TYR 153 151 151 TYR TYR B . n B 1 154 ASP 154 152 152 ASP ASP B . n B 1 155 GLU 155 153 153 GLU GLU B . n B 1 156 ASN 156 154 154 ASN ASN B . n B 1 157 CYS 157 155 155 CYS CYS B . n B 1 158 ASP 158 156 156 ASP ASP B . n B 1 159 ARG 159 157 157 ARG ARG B . n B 1 160 ASP 160 158 158 ASP ASP B . n B 1 161 ASN 161 159 159 ASN ASN B . n B 1 162 VAL 162 160 160 VAL VAL B . n B 1 163 ASN 163 161 161 ASN ASN B . n B 1 164 HIS 164 162 162 HIS HIS B . n B 1 165 ALA 165 163 163 ALA ALA B . n B 1 166 VAL 166 164 164 VAL VAL B . n B 1 167 LEU 167 165 165 LEU LEU B . n B 1 168 VAL 168 166 166 VAL VAL B . n B 1 169 VAL 169 167 167 VAL VAL B . n B 1 170 GLY 170 168 168 GLY GLY B . n B 1 171 TYR 171 169 169 TYR TYR B . n B 1 172 GLY 172 170 170 GLY GLY B . n B 1 173 THR 173 171 171 THR THR B . n B 1 174 GLN 174 172 172 GLN GLN B . n B 1 175 LYS 175 173 173 LYS LYS B . n B 1 176 GLY 176 174 174 GLY GLY B . n B 1 177 SER 177 175 175 SER SER B . n B 1 178 LYS 178 176 176 LYS LYS B . n B 1 179 HIS 179 177 177 HIS HIS B . n B 1 180 TRP 180 178 178 TRP TRP B . n B 1 181 ILE 181 179 179 ILE ILE B . n B 1 182 ILE 182 180 180 ILE ILE B . n B 1 183 LYS 183 181 181 LYS LYS B . n B 1 184 ASN 184 182 182 ASN ASN B . n B 1 185 SER 185 183 183 SER SER B . n B 1 186 TRP 186 184 184 TRP TRP B . n B 1 187 GLY 187 185 185 GLY GLY B . n B 1 188 GLU 188 186 186 GLU GLU B . n B 1 189 SER 189 187 187 SER SER B . n B 1 190 TRP 190 188 188 TRP TRP B . n B 1 191 GLY 191 189 189 GLY GLY B . n B 1 192 ASN 192 190 190 ASN ASN B . n B 1 193 LYS 193 191 191 LYS LYS B . n B 1 194 GLY 194 192 192 GLY GLY B . n B 1 195 TYR 195 193 193 TYR TYR B . n B 1 196 ALA 196 194 194 ALA ALA B . n B 1 197 LEU 197 195 195 LEU LEU B . n B 1 198 LEU 198 196 196 LEU LEU B . n B 1 199 ALA 199 197 197 ALA ALA B . n B 1 200 ARG 200 198 198 ARG ARG B . n B 1 201 ASN 201 199 199 ASN ASN B . n B 1 202 LYS 202 200 200 LYS LYS B . n B 1 203 ASN 203 201 201 ASN ASN B . n B 1 204 ASN 204 202 202 ASN ASN B . n B 1 205 ALA 205 203 203 ALA ALA B . n B 1 206 CYS 206 204 204 CYS CYS B . n B 1 207 GLY 207 205 205 GLY GLY B . n B 1 208 ILE 208 206 206 ILE ILE B . n B 1 209 THR 209 207 207 THR THR B . n B 1 210 ASN 210 208 208 ASN ASN B . n B 1 211 MET 211 209 209 MET MET B . n B 1 212 ALA 212 210 210 ALA ALA B . n B 1 213 SER 213 211 211 SER SER B . n B 1 214 PHE 214 212 212 PHE PHE B . n B 1 215 PRO 215 213 213 PRO PRO B . n B 1 216 LYS 216 214 214 LYS LYS B . n B 1 217 MET 217 215 215 MET MET B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 NAG 1 C NAG 1 A NAG 401 n C 2 NAG 2 C NAG 2 A NAG 402 n C 2 BMA 3 C BMA 3 A BMA 403 n C 2 MAN 4 C MAN 4 A MAN 404 n C 2 MAN 5 C MAN 5 A MAN 405 n C 2 GAL 6 C GAL 6 A GAL 406 n C 2 MAN 7 C MAN 7 A MAN 420 n C 2 FUC 8 C FUC 8 A FUC 410 n D 3 SGN 1 D SGN 1 D SGN 3 n D 3 IDS 2 D IDS 2 D IDS 4 n D 3 SGN 3 D SGN 3 D SGN 5 n D 3 IDS 4 D IDS 4 D IDS 6 n D 3 SGN 5 D SGN 5 D SGN 7 n D 3 IDS 6 D IDS 6 D IDS 8 n D 3 SGN 7 D SGN 7 D SGN 9 n D 3 IDS 8 D IDS 8 D IDS 10 n D 3 SGN 9 D SGN 9 D SGN 11 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG 1 401 401 NAG NAG B . F 5 EDO 1 402 1 EDO EDO B . G 6 HOH 1 501 2 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 9 ? CG ? A LYS 11 CG 2 1 Y 1 A LYS 9 ? CD ? A LYS 11 CD 3 1 Y 1 A LYS 9 ? CE ? A LYS 11 CE 4 1 Y 1 A LYS 9 ? NZ ? A LYS 11 NZ 5 1 Y 1 A GLN 21 ? CG ? A GLN 23 CG 6 1 Y 1 A GLN 21 ? CD ? A GLN 23 CD 7 1 Y 1 A GLN 21 ? OE1 ? A GLN 23 OE1 8 1 Y 1 A GLN 21 ? NE2 ? A GLN 23 NE2 9 1 Y 1 A LYS 44 ? CE ? A LYS 46 CE 10 1 Y 1 A LYS 44 ? NZ ? A LYS 46 NZ 11 1 Y 1 A LYS 119 ? CG ? A LYS 121 CG 12 1 Y 1 A LYS 119 ? CD ? A LYS 121 CD 13 1 Y 1 A LYS 119 ? CE ? A LYS 121 CE 14 1 Y 1 A LYS 119 ? NZ ? A LYS 121 NZ 15 1 Y 1 A ARG 147 ? CG ? A ARG 149 CG 16 1 Y 1 A ARG 147 ? CD ? A ARG 149 CD 17 1 Y 1 A ARG 147 ? NE ? A ARG 149 NE 18 1 Y 1 A ARG 147 ? CZ ? A ARG 149 CZ 19 1 Y 1 A ARG 147 ? NH1 ? A ARG 149 NH1 20 1 Y 1 A ARG 147 ? NH2 ? A ARG 149 NH2 21 1 Y 1 A LYS 173 ? CG ? A LYS 175 CG 22 1 Y 1 A LYS 173 ? CD ? A LYS 175 CD 23 1 Y 1 A LYS 173 ? CE ? A LYS 175 CE 24 1 Y 1 A LYS 173 ? NZ ? A LYS 175 NZ 25 1 Y 1 A LYS 191 ? CG ? A LYS 193 CG 26 1 Y 1 A LYS 191 ? CD ? A LYS 193 CD 27 1 Y 1 A LYS 191 ? CE ? A LYS 193 CE 28 1 Y 1 A LYS 191 ? NZ ? A LYS 193 NZ 29 1 Y 1 A LYS 200 ? CD ? A LYS 202 CD 30 1 Y 1 A LYS 200 ? CE ? A LYS 202 CE 31 1 Y 1 A LYS 200 ? NZ ? A LYS 202 NZ 32 1 Y 1 B VAL 1 ? CG1 ? B VAL 3 CG1 33 1 Y 1 B VAL 1 ? CG2 ? B VAL 3 CG2 34 1 Y 1 B LYS 44 ? CE ? B LYS 46 CE 35 1 Y 1 B LYS 44 ? NZ ? B LYS 46 NZ 36 1 Y 1 B ARG 108 ? CG ? B ARG 110 CG 37 1 Y 1 B ARG 108 ? CD ? B ARG 110 CD 38 1 Y 1 B ARG 108 ? NE ? B ARG 110 NE 39 1 Y 1 B ARG 108 ? CZ ? B ARG 110 CZ 40 1 Y 1 B ARG 108 ? NH1 ? B ARG 110 NH1 41 1 Y 1 B ARG 108 ? NH2 ? B ARG 110 NH2 42 1 Y 1 B ARG 111 ? CG ? B ARG 113 CG 43 1 Y 1 B ARG 111 ? CD ? B ARG 113 CD 44 1 Y 1 B ARG 111 ? NE ? B ARG 113 NE 45 1 Y 1 B ARG 111 ? CZ ? B ARG 113 CZ 46 1 Y 1 B ARG 111 ? NH1 ? B ARG 113 NH1 47 1 Y 1 B ARG 111 ? NH2 ? B ARG 113 NH2 48 1 Y 1 B LYS 119 ? CG ? B LYS 121 CG 49 1 Y 1 B LYS 119 ? CD ? B LYS 121 CD 50 1 Y 1 B LYS 119 ? CE ? B LYS 121 CE 51 1 Y 1 B LYS 119 ? NZ ? B LYS 121 NZ 52 1 Y 1 B LYS 122 ? CG ? B LYS 124 CG 53 1 Y 1 B LYS 122 ? CD ? B LYS 124 CD 54 1 Y 1 B LYS 122 ? CE ? B LYS 124 CE 55 1 Y 1 B LYS 122 ? NZ ? B LYS 124 NZ 56 1 Y 1 B ARG 123 ? CG ? B ARG 125 CG 57 1 Y 1 B ARG 123 ? CD ? B ARG 125 CD 58 1 Y 1 B ARG 123 ? NE ? B ARG 125 NE 59 1 Y 1 B ARG 123 ? CZ ? B ARG 125 CZ 60 1 Y 1 B ARG 123 ? NH1 ? B ARG 125 NH1 61 1 Y 1 B ARG 123 ? NH2 ? B ARG 125 NH2 62 1 Y 1 B ARG 127 ? CG ? B ARG 129 CG 63 1 Y 1 B ARG 127 ? CD ? B ARG 129 CD 64 1 Y 1 B ARG 127 ? NE ? B ARG 129 NE 65 1 Y 1 B ARG 127 ? CZ ? B ARG 129 CZ 66 1 Y 1 B ARG 127 ? NH1 ? B ARG 129 NH1 67 1 Y 1 B ARG 127 ? NH2 ? B ARG 129 NH2 68 1 Y 1 B PHE 142 ? CG ? B PHE 144 CG 69 1 Y 1 B PHE 142 ? CD1 ? B PHE 144 CD1 70 1 Y 1 B PHE 142 ? CD2 ? B PHE 144 CD2 71 1 Y 1 B PHE 142 ? CE1 ? B PHE 144 CE1 72 1 Y 1 B PHE 142 ? CE2 ? B PHE 144 CE2 73 1 Y 1 B PHE 142 ? CZ ? B PHE 144 CZ 74 1 Y 1 B ARG 147 ? CG ? B ARG 149 CG 75 1 Y 1 B ARG 147 ? CD ? B ARG 149 CD 76 1 Y 1 B ARG 147 ? NE ? B ARG 149 NE 77 1 Y 1 B ARG 147 ? CZ ? B ARG 149 CZ 78 1 Y 1 B ARG 147 ? NH1 ? B ARG 149 NH1 79 1 Y 1 B ARG 147 ? NH2 ? B ARG 149 NH2 80 1 Y 1 B TYR 151 ? CG ? B TYR 153 CG 81 1 Y 1 B TYR 151 ? CD1 ? B TYR 153 CD1 82 1 Y 1 B TYR 151 ? CD2 ? B TYR 153 CD2 83 1 Y 1 B TYR 151 ? CE1 ? B TYR 153 CE1 84 1 Y 1 B TYR 151 ? CE2 ? B TYR 153 CE2 85 1 Y 1 B TYR 151 ? CZ ? B TYR 153 CZ 86 1 Y 1 B TYR 151 ? OH ? B TYR 153 OH 87 1 Y 1 B GLU 153 ? CG ? B GLU 155 CG 88 1 Y 1 B GLU 153 ? CD ? B GLU 155 CD 89 1 Y 1 B GLU 153 ? OE1 ? B GLU 155 OE1 90 1 Y 1 B GLU 153 ? OE2 ? B GLU 155 OE2 91 1 Y 1 B ASN 154 ? CG ? B ASN 156 CG 92 1 Y 1 B ASN 154 ? OD1 ? B ASN 156 OD1 93 1 Y 1 B ASN 154 ? ND2 ? B ASN 156 ND2 94 1 Y 1 B ARG 157 ? CD ? B ARG 159 CD 95 1 Y 1 B ARG 157 ? NE ? B ARG 159 NE 96 1 Y 1 B ARG 157 ? CZ ? B ARG 159 CZ 97 1 Y 1 B ARG 157 ? NH1 ? B ARG 159 NH1 98 1 Y 1 B ARG 157 ? NH2 ? B ARG 159 NH2 99 1 Y 1 B ASP 158 ? CG ? B ASP 160 CG 100 1 Y 1 B ASP 158 ? OD1 ? B ASP 160 OD1 101 1 Y 1 B ASP 158 ? OD2 ? B ASP 160 OD2 102 1 Y 1 B ASN 159 ? CG ? B ASN 161 CG 103 1 Y 1 B ASN 159 ? OD1 ? B ASN 161 OD1 104 1 Y 1 B ASN 159 ? ND2 ? B ASN 161 ND2 105 1 Y 1 B LYS 173 ? CG ? B LYS 175 CG 106 1 Y 1 B LYS 173 ? CD ? B LYS 175 CD 107 1 Y 1 B LYS 173 ? CE ? B LYS 175 CE 108 1 Y 1 B LYS 173 ? NZ ? B LYS 175 NZ 109 1 Y 1 B LYS 176 ? CG ? B LYS 178 CG 110 1 Y 1 B LYS 176 ? CD ? B LYS 178 CD 111 1 Y 1 B LYS 176 ? CE ? B LYS 178 CE 112 1 Y 1 B LYS 176 ? NZ ? B LYS 178 NZ 113 1 Y 1 B LYS 191 ? CD ? B LYS 193 CD 114 1 Y 1 B LYS 191 ? CE ? B LYS 193 CE 115 1 Y 1 B LYS 191 ? NZ ? B LYS 193 NZ 116 1 Y 1 B LYS 200 ? CG ? B LYS 202 CG 117 1 Y 1 B LYS 200 ? CD ? B LYS 202 CD 118 1 Y 1 B LYS 200 ? CE ? B LYS 202 CE 119 1 Y 1 B LYS 200 ? NZ ? B LYS 202 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8V58 _cell.details ? _cell.formula_units_Z ? _cell.length_a 111.892 _cell.length_a_esd ? _cell.length_b 111.892 _cell.length_b_esd ? _cell.length_c 116.653 _cell.length_c_esd ? _cell.volume 1460474.523 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8V58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8V58 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.86 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 68.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1M sodium acetate, 0.2M lithium sulfate, 31.5% PEG 8K ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-11-06 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 92.46 _reflns.entry_id 8V58 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.1 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13901 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.099 _reflns.pdbx_Rpim_I_all 0.036 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.98 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.092 _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.15 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 675 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.030 _reflns_shell.pdbx_Rpim_I_all 0.361 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.875 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.963 _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 113.75 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8V58 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.10 _refine.ls_d_res_low 19.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13647 _refine.ls_number_reflns_R_free 686 _refine.ls_number_reflns_R_work 12961 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.02 _refine.ls_percent_reflns_R_free 5.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2386 _refine.ls_R_factor_R_free 0.2926 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2359 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.4323 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4078 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 19.87 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 3422 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 3169 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 252 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0087 ? 3487 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.2979 ? 4757 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0758 ? 560 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0082 ? 589 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.6191 ? 1276 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.10 3.34 . . 130 2499 97.15 . . . . 0.3029 . . . . . . . . . . . 0.3343 'X-RAY DIFFRACTION' 3.34 3.67 . . 136 2557 98.43 . . . . 0.2480 . . . . . . . . . . . 0.3155 'X-RAY DIFFRACTION' 3.67 4.20 . . 138 2586 98.95 . . . . 0.2281 . . . . . . . . . . . 0.2909 'X-RAY DIFFRACTION' 4.20 5.27 . . 138 2630 99.21 . . . . 0.2196 . . . . . . . . . . . 0.2483 'X-RAY DIFFRACTION' 5.27 19.87 . . 144 2689 96.46 . . . . 0.2331 . . . . . . . . . . . 0.3053 # _struct.entry_id 8V58 _struct.title 'Complex of murine cathepsin K with bound heparan sulfate 12mer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8V58 _struct_keywords.text 'complex, heparan sulfate, protease, collagenase, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_MOUSE _struct_ref.pdbx_db_accession P55097 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQN GGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRD NVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFPKM ; _struct_ref.pdbx_align_begin 113 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8V58 A 1 ? 217 ? P55097 113 ? 329 ? -1 215 2 1 8V58 B 1 ? 217 ? P55097 113 ? 329 ? -1 215 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 'dimeric, unknown dimer interface' _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 26 ? GLY A 45 ? SER A 24 GLY A 43 1 ? 20 HELX_P HELX_P2 AA2 SER A 51 ? VAL A 59 ? SER A 49 VAL A 57 1 ? 9 HELX_P HELX_P3 AA3 TYR A 63 ? GLY A 67 ? TYR A 61 GLY A 65 5 ? 5 HELX_P HELX_P4 AA4 TYR A 69 ? ASN A 80 ? TYR A 67 ASN A 78 1 ? 12 HELX_P HELX_P5 AA5 ASN A 119 ? VAL A 130 ? ASN A 117 VAL A 128 1 ? 12 HELX_P HELX_P6 AA6 LEU A 141 ? PHE A 146 ? LEU A 139 PHE A 144 1 ? 6 HELX_P HELX_P7 AA7 ASN A 204 ? ILE A 208 ? ASN A 202 ILE A 206 5 ? 5 HELX_P HELX_P8 AA8 SER B 26 ? THR B 44 ? SER B 24 THR B 42 1 ? 19 HELX_P HELX_P9 AA9 SER B 51 ? VAL B 59 ? SER B 49 VAL B 57 1 ? 9 HELX_P HELX_P10 AB1 TYR B 63 ? GLY B 67 ? TYR B 61 GLY B 65 5 ? 5 HELX_P HELX_P11 AB2 TYR B 69 ? GLY B 81 ? TYR B 67 GLY B 79 1 ? 13 HELX_P HELX_P12 AB3 ASN B 119 ? VAL B 130 ? ASN B 117 VAL B 128 1 ? 12 HELX_P HELX_P13 AB4 LEU B 141 ? PHE B 146 ? LEU B 139 PHE B 144 1 ? 6 HELX_P HELX_P14 AB5 ASN B 204 ? ILE B 208 ? ASN B 202 ILE B 206 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 65 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf2 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 56 A CYS 96 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf3 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 206 SG ? ? A CYS 155 A CYS 204 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf4 disulf ? ? B CYS 24 SG ? ? ? 1_555 B CYS 65 SG ? ? B CYS 22 B CYS 63 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf5 disulf ? ? B CYS 58 SG ? ? ? 1_555 B CYS 98 SG ? ? B CYS 56 B CYS 96 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf6 disulf ? ? B CYS 157 SG ? ? ? 1_555 B CYS 206 SG ? ? B CYS 155 B CYS 204 1_555 ? ? ? ? ? ? ? 2.035 ? ? covale1 covale one ? A ASN 101 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 99 C NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale2 covale one ? B ASN 101 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 99 B NAG 401 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale4 covale both ? C NAG . O6 ? ? ? 1_555 C FUC . C1 ? ? C NAG 1 C FUC 8 1_555 ? ? ? ? ? ? ? 1.454 ? ? covale5 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale6 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale7 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 7 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale8 covale both ? C MAN . O4 ? ? ? 1_555 C MAN . C1 ? ? C MAN 4 C MAN 5 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale9 covale both ? C MAN . O4 ? ? ? 1_555 C GAL . C1 ? ? C MAN 5 C GAL 6 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale10 covale both ? D SGN . O4 ? ? ? 1_555 D IDS . C1 ? ? D SGN 1 D IDS 2 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale11 covale both ? D IDS . O4 ? ? ? 1_555 D SGN . C1 ? ? D IDS 2 D SGN 3 1_555 ? ? ? ? ? ? ? 1.454 ? ? covale12 covale both ? D SGN . O4 ? ? ? 1_555 D IDS . C1 ? ? D SGN 3 D IDS 4 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale13 covale both ? D IDS . O4 ? ? ? 1_555 D SGN . C1 ? ? D IDS 4 D SGN 5 1_555 ? ? ? ? ? ? ? 1.467 ? ? covale14 covale both ? D SGN . O4 ? ? ? 1_555 D IDS . C1 ? ? D SGN 5 D IDS 6 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale15 covale both ? D IDS . O4 ? ? ? 1_555 D SGN . C1 ? ? D IDS 6 D SGN 7 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale16 covale both ? D SGN . O4 ? ? ? 1_555 D IDS . C1 ? ? D SGN 7 D IDS 8 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale17 covale both ? D IDS . O4 ? ? ? 1_555 D SGN . C1 ? ? D IDS 8 D SGN 9 1_555 ? ? ? ? ? ? ? 1.442 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN A 101 ? NAG C 1 ? 1_555 ASN A 99 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG E . ? ASN B 101 ? NAG B 401 ? 1_555 ASN B 99 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 24 ? CYS A 65 ? CYS A 22 ? 1_555 CYS A 63 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 58 ? CYS A 98 ? CYS A 56 ? 1_555 CYS A 96 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 157 ? CYS A 206 ? CYS A 155 ? 1_555 CYS A 204 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 24 ? CYS B 65 ? CYS B 22 ? 1_555 CYS B 63 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS B 58 ? CYS B 98 ? CYS B 56 ? 1_555 CYS B 96 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS B 157 ? CYS B 206 ? CYS B 155 ? 1_555 CYS B 204 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 3 ? AA6 ? 5 ? AA7 ? 2 ? AA8 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 7 ? ASP A 8 ? ILE A 5 ASP A 6 AA1 2 HIS A 164 ? GLN A 174 ? HIS A 162 GLN A 172 AA1 3 ILE A 133 ? ILE A 137 ? ILE A 131 ILE A 135 AA2 1 ILE A 7 ? ASP A 8 ? ILE A 5 ASP A 6 AA2 2 HIS A 164 ? GLN A 174 ? HIS A 162 GLN A 172 AA2 3 SER A 177 ? LYS A 183 ? SER A 175 LYS A 181 AA2 4 TYR A 195 ? ALA A 199 ? TYR A 193 ALA A 197 AA2 5 VAL A 151 ? TYR A 152 ? VAL A 149 TYR A 150 AA3 1 ILE A 83 ? ASP A 84 ? ILE A 81 ASP A 82 AA3 2 LYS A 105 ? ALA A 107 ? LYS A 103 ALA A 105 AA4 1 GLY A 111 ? GLU A 114 ? GLY A 109 GLU A 112 AA4 2 SER A 213 ? LYS A 216 ? SER A 211 LYS A 214 AA5 1 ILE B 7 ? ASP B 8 ? ILE B 5 ASP B 6 AA5 2 HIS B 164 ? GLN B 174 ? HIS B 162 GLN B 172 AA5 3 ILE B 133 ? ILE B 137 ? ILE B 131 ILE B 135 AA6 1 ILE B 7 ? ASP B 8 ? ILE B 5 ASP B 6 AA6 2 HIS B 164 ? GLN B 174 ? HIS B 162 GLN B 172 AA6 3 SER B 177 ? LYS B 183 ? SER B 175 LYS B 181 AA6 4 TYR B 195 ? ALA B 199 ? TYR B 193 ALA B 197 AA6 5 VAL B 151 ? TYR B 152 ? VAL B 149 TYR B 150 AA7 1 ILE B 83 ? ASP B 84 ? ILE B 81 ASP B 82 AA7 2 LYS B 105 ? ALA B 107 ? LYS B 103 ALA B 105 AA8 1 GLY B 111 ? GLU B 114 ? GLY B 109 GLU B 112 AA8 2 SER B 213 ? LYS B 216 ? SER B 211 LYS B 214 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 7 ? N ILE A 5 O TYR A 171 ? O TYR A 169 AA1 2 3 O VAL A 168 ? O VAL A 166 N ILE A 133 ? N ILE A 131 AA2 1 2 N ILE A 7 ? N ILE A 5 O TYR A 171 ? O TYR A 169 AA2 2 3 N VAL A 169 ? N VAL A 167 O ILE A 181 ? O ILE A 179 AA2 3 4 N TRP A 180 ? N TRP A 178 O LEU A 198 ? O LEU A 196 AA2 4 5 O LEU A 197 ? O LEU A 195 N TYR A 152 ? N TYR A 150 AA3 1 2 N ILE A 83 ? N ILE A 81 O ALA A 106 ? O ALA A 104 AA4 1 2 N GLY A 111 ? N GLY A 109 O LYS A 216 ? O LYS A 214 AA5 1 2 N ILE B 7 ? N ILE B 5 O TYR B 171 ? O TYR B 169 AA5 2 3 O VAL B 168 ? O VAL B 166 N ILE B 133 ? N ILE B 131 AA6 1 2 N ILE B 7 ? N ILE B 5 O TYR B 171 ? O TYR B 169 AA6 2 3 N GLY B 172 ? N GLY B 170 O HIS B 179 ? O HIS B 177 AA6 3 4 N TRP B 180 ? N TRP B 178 O LEU B 198 ? O LEU B 196 AA6 4 5 O LEU B 197 ? O LEU B 195 N TYR B 152 ? N TYR B 150 AA7 1 2 N ILE B 83 ? N ILE B 81 O ALA B 106 ? O ALA B 104 AA8 1 2 N GLY B 111 ? N GLY B 109 O LYS B 216 ? O LYS B 214 # _pdbx_entry_details.entry_id 8V58 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;The conformation of the 12mer oligosaccharide represents the best fit of the heparan sulfate oligosaccharide to the electron density. Difference density suggests alternate conformations likely also exist. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 57 ? ? -69.26 88.08 2 1 CYS A 96 ? ? -64.82 99.67 3 1 LYS A 103 ? ? -35.92 121.58 4 1 SER A 146 ? ? -136.18 -37.68 5 1 TYR A 151 ? ? -160.18 115.36 6 1 MET A 209 ? ? -154.68 73.74 7 1 THR B 42 ? ? -115.85 -160.57 8 1 VAL B 57 ? ? -69.43 88.79 9 1 CYS B 96 ? ? -63.70 99.93 10 1 LYS B 103 ? ? -34.89 122.83 11 1 SER B 146 ? ? -136.07 -36.86 12 1 MET B 209 ? ? -153.57 72.43 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z+1/4 3 y,-x,z+3/4 4 x,-y,-z+1/2 5 -x,y,-z 6 -x,-y,z+1/2 7 y,x,-z+3/4 8 -y,-x,-z+1/4 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 23.119 -11.005 -0.281 1.00304746017 1.1588545494 1.03031143586 0.118505681606 0.0251961691096 -0.181378249612 1.81463664148 2.21339408401 4.38836356704 0.81218023484 0.625311234632 0.735539072883 0.125724921084 0.208129576449 -4.89812465961e-09 0.190666029261 -0.0689733093069 -0.280909477346 -0.148815656606 -0.456104831016 0.170379072208 'X-RAY DIFFRACTION' 2 ? refined 23.136 -45.669 -13.212 1.54979188262 1.17674848261 1.53458622577 0.144504856401 -0.239168700701 -0.363946583595 0.356210824176 4.12292345475 3.29206484709 -0.329050446363 1.0097690827 1.27397593638 0.376405428817 -0.197117328037 -1.46590280181e-1 0.00895248060833 -0.597059855929 -0.37894377302 -0.0900475021605 0.946256844055 -0.0229226142225 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 215 '( CHAIN A AND RESID 1:215 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 B 215 '( CHAIN B AND ( RESID 1:215 OR RESID 401:401 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 2 B 401 B 401 '( CHAIN B AND ( RESID 1:215 OR RESID 401:401 ) )' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A ARG 0 ? A ARG 2 3 1 Y 1 B GLY -1 ? B GLY 1 4 1 Y 1 B ARG 0 ? B ARG 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 EDO C1 C N N 112 EDO O1 O N N 113 EDO C2 C N N 114 EDO O2 O N N 115 EDO H11 H N N 116 EDO H12 H N N 117 EDO HO1 H N N 118 EDO H21 H N N 119 EDO H22 H N N 120 EDO HO2 H N N 121 FUC C1 C N R 122 FUC C2 C N S 123 FUC C3 C N R 124 FUC C4 C N S 125 FUC C5 C N S 126 FUC C6 C N N 127 FUC O1 O N N 128 FUC O2 O N N 129 FUC O3 O N N 130 FUC O4 O N N 131 FUC O5 O N N 132 FUC H1 H N N 133 FUC H2 H N N 134 FUC H3 H N N 135 FUC H4 H N N 136 FUC H5 H N N 137 FUC H61 H N N 138 FUC H62 H N N 139 FUC H63 H N N 140 FUC HO1 H N N 141 FUC HO2 H N N 142 FUC HO3 H N N 143 FUC HO4 H N N 144 GAL C1 C N R 145 GAL C2 C N R 146 GAL C3 C N S 147 GAL C4 C N R 148 GAL C5 C N R 149 GAL C6 C N N 150 GAL O1 O N N 151 GAL O2 O N N 152 GAL O3 O N N 153 GAL O4 O N N 154 GAL O5 O N N 155 GAL O6 O N N 156 GAL H1 H N N 157 GAL H2 H N N 158 GAL H3 H N N 159 GAL H4 H N N 160 GAL H5 H N N 161 GAL H61 H N N 162 GAL H62 H N N 163 GAL HO1 H N N 164 GAL HO2 H N N 165 GAL HO3 H N N 166 GAL HO4 H N N 167 GAL HO6 H N N 168 GLN N N N N 169 GLN CA C N S 170 GLN C C N N 171 GLN O O N N 172 GLN CB C N N 173 GLN CG C N N 174 GLN CD C N N 175 GLN OE1 O N N 176 GLN NE2 N N N 177 GLN OXT O N N 178 GLN H H N N 179 GLN H2 H N N 180 GLN HA H N N 181 GLN HB2 H N N 182 GLN HB3 H N N 183 GLN HG2 H N N 184 GLN HG3 H N N 185 GLN HE21 H N N 186 GLN HE22 H N N 187 GLN HXT H N N 188 GLU N N N N 189 GLU CA C N S 190 GLU C C N N 191 GLU O O N N 192 GLU CB C N N 193 GLU CG C N N 194 GLU CD C N N 195 GLU OE1 O N N 196 GLU OE2 O N N 197 GLU OXT O N N 198 GLU H H N N 199 GLU H2 H N N 200 GLU HA H N N 201 GLU HB2 H N N 202 GLU HB3 H N N 203 GLU HG2 H N N 204 GLU HG3 H N N 205 GLU HE2 H N N 206 GLU HXT H N N 207 GLY N N N N 208 GLY CA C N N 209 GLY C C N N 210 GLY O O N N 211 GLY OXT O N N 212 GLY H H N N 213 GLY H2 H N N 214 GLY HA2 H N N 215 GLY HA3 H N N 216 GLY HXT H N N 217 HIS N N N N 218 HIS CA C N S 219 HIS C C N N 220 HIS O O N N 221 HIS CB C N N 222 HIS CG C Y N 223 HIS ND1 N Y N 224 HIS CD2 C Y N 225 HIS CE1 C Y N 226 HIS NE2 N Y N 227 HIS OXT O N N 228 HIS H H N N 229 HIS H2 H N N 230 HIS HA H N N 231 HIS HB2 H N N 232 HIS HB3 H N N 233 HIS HD1 H N N 234 HIS HD2 H N N 235 HIS HE1 H N N 236 HIS HE2 H N N 237 HIS HXT H N N 238 HOH O O N N 239 HOH H1 H N N 240 HOH H2 H N N 241 IDS C1 C N R 242 IDS C2 C N R 243 IDS C3 C N S 244 IDS C4 C N S 245 IDS C5 C N R 246 IDS C6 C N N 247 IDS O1 O N N 248 IDS O2 O N N 249 IDS O3 O N N 250 IDS O4 O N N 251 IDS O5 O N N 252 IDS O6A O N N 253 IDS O6B O N N 254 IDS S S N N 255 IDS O1S O N N 256 IDS O2S O N N 257 IDS O3S O N N 258 IDS H1 H N N 259 IDS H2 H N N 260 IDS H3 H N N 261 IDS H4 H N N 262 IDS H5 H N N 263 IDS HO1 H N N 264 IDS HO3 H N N 265 IDS HO4 H N N 266 IDS HO6B H N N 267 IDS HOS3 H N N 268 ILE N N N N 269 ILE CA C N S 270 ILE C C N N 271 ILE O O N N 272 ILE CB C N S 273 ILE CG1 C N N 274 ILE CG2 C N N 275 ILE CD1 C N N 276 ILE OXT O N N 277 ILE H H N N 278 ILE H2 H N N 279 ILE HA H N N 280 ILE HB H N N 281 ILE HG12 H N N 282 ILE HG13 H N N 283 ILE HG21 H N N 284 ILE HG22 H N N 285 ILE HG23 H N N 286 ILE HD11 H N N 287 ILE HD12 H N N 288 ILE HD13 H N N 289 ILE HXT H N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 MAN C1 C N S 338 MAN C2 C N S 339 MAN C3 C N S 340 MAN C4 C N S 341 MAN C5 C N R 342 MAN C6 C N N 343 MAN O1 O N N 344 MAN O2 O N N 345 MAN O3 O N N 346 MAN O4 O N N 347 MAN O5 O N N 348 MAN O6 O N N 349 MAN H1 H N N 350 MAN H2 H N N 351 MAN H3 H N N 352 MAN H4 H N N 353 MAN H5 H N N 354 MAN H61 H N N 355 MAN H62 H N N 356 MAN HO1 H N N 357 MAN HO2 H N N 358 MAN HO3 H N N 359 MAN HO4 H N N 360 MAN HO6 H N N 361 MET N N N N 362 MET CA C N S 363 MET C C N N 364 MET O O N N 365 MET CB C N N 366 MET CG C N N 367 MET SD S N N 368 MET CE C N N 369 MET OXT O N N 370 MET H H N N 371 MET H2 H N N 372 MET HA H N N 373 MET HB2 H N N 374 MET HB3 H N N 375 MET HG2 H N N 376 MET HG3 H N N 377 MET HE1 H N N 378 MET HE2 H N N 379 MET HE3 H N N 380 MET HXT H N N 381 NAG C1 C N R 382 NAG C2 C N R 383 NAG C3 C N R 384 NAG C4 C N S 385 NAG C5 C N R 386 NAG C6 C N N 387 NAG C7 C N N 388 NAG C8 C N N 389 NAG N2 N N N 390 NAG O1 O N N 391 NAG O3 O N N 392 NAG O4 O N N 393 NAG O5 O N N 394 NAG O6 O N N 395 NAG O7 O N N 396 NAG H1 H N N 397 NAG H2 H N N 398 NAG H3 H N N 399 NAG H4 H N N 400 NAG H5 H N N 401 NAG H61 H N N 402 NAG H62 H N N 403 NAG H81 H N N 404 NAG H82 H N N 405 NAG H83 H N N 406 NAG HN2 H N N 407 NAG HO1 H N N 408 NAG HO3 H N N 409 NAG HO4 H N N 410 NAG HO6 H N N 411 PHE N N N N 412 PHE CA C N S 413 PHE C C N N 414 PHE O O N N 415 PHE CB C N N 416 PHE CG C Y N 417 PHE CD1 C Y N 418 PHE CD2 C Y N 419 PHE CE1 C Y N 420 PHE CE2 C Y N 421 PHE CZ C Y N 422 PHE OXT O N N 423 PHE H H N N 424 PHE H2 H N N 425 PHE HA H N N 426 PHE HB2 H N N 427 PHE HB3 H N N 428 PHE HD1 H N N 429 PHE HD2 H N N 430 PHE HE1 H N N 431 PHE HE2 H N N 432 PHE HZ H N N 433 PHE HXT H N N 434 PRO N N N N 435 PRO CA C N S 436 PRO C C N N 437 PRO O O N N 438 PRO CB C N N 439 PRO CG C N N 440 PRO CD C N N 441 PRO OXT O N N 442 PRO H H N N 443 PRO HA H N N 444 PRO HB2 H N N 445 PRO HB3 H N N 446 PRO HG2 H N N 447 PRO HG3 H N N 448 PRO HD2 H N N 449 PRO HD3 H N N 450 PRO HXT H N N 451 SER N N N N 452 SER CA C N S 453 SER C C N N 454 SER O O N N 455 SER CB C N N 456 SER OG O N N 457 SER OXT O N N 458 SER H H N N 459 SER H2 H N N 460 SER HA H N N 461 SER HB2 H N N 462 SER HB3 H N N 463 SER HG H N N 464 SER HXT H N N 465 SGN C1 C N S 466 SGN C2 C N R 467 SGN C3 C N R 468 SGN C4 C N S 469 SGN C5 C N R 470 SGN C6 C N N 471 SGN N2 N N N 472 SGN O1 O N N 473 SGN O3 O N N 474 SGN O4 O N N 475 SGN O5 O N N 476 SGN O6 O N N 477 SGN S1 S N N 478 SGN O1S O N N 479 SGN O2S O N N 480 SGN O3S O N N 481 SGN S2 S N N 482 SGN O4S O N N 483 SGN O5S O N N 484 SGN O6S O N N 485 SGN H1 H N N 486 SGN H2 H N N 487 SGN H3 H N N 488 SGN H4 H N N 489 SGN H5 H N N 490 SGN H61 H N N 491 SGN H62 H N N 492 SGN HN21 H N N 493 SGN HO1 H N N 494 SGN HO3 H N N 495 SGN HO4 H N N 496 SGN HOS3 H N N 497 SGN HOS6 H N N 498 THR N N N N 499 THR CA C N S 500 THR C C N N 501 THR O O N N 502 THR CB C N R 503 THR OG1 O N N 504 THR CG2 C N N 505 THR OXT O N N 506 THR H H N N 507 THR H2 H N N 508 THR HA H N N 509 THR HB H N N 510 THR HG1 H N N 511 THR HG21 H N N 512 THR HG22 H N N 513 THR HG23 H N N 514 THR HXT H N N 515 TRP N N N N 516 TRP CA C N S 517 TRP C C N N 518 TRP O O N N 519 TRP CB C N N 520 TRP CG C Y N 521 TRP CD1 C Y N 522 TRP CD2 C Y N 523 TRP NE1 N Y N 524 TRP CE2 C Y N 525 TRP CE3 C Y N 526 TRP CZ2 C Y N 527 TRP CZ3 C Y N 528 TRP CH2 C Y N 529 TRP OXT O N N 530 TRP H H N N 531 TRP H2 H N N 532 TRP HA H N N 533 TRP HB2 H N N 534 TRP HB3 H N N 535 TRP HD1 H N N 536 TRP HE1 H N N 537 TRP HE3 H N N 538 TRP HZ2 H N N 539 TRP HZ3 H N N 540 TRP HH2 H N N 541 TRP HXT H N N 542 TYR N N N N 543 TYR CA C N S 544 TYR C C N N 545 TYR O O N N 546 TYR CB C N N 547 TYR CG C Y N 548 TYR CD1 C Y N 549 TYR CD2 C Y N 550 TYR CE1 C Y N 551 TYR CE2 C Y N 552 TYR CZ C Y N 553 TYR OH O N N 554 TYR OXT O N N 555 TYR H H N N 556 TYR H2 H N N 557 TYR HA H N N 558 TYR HB2 H N N 559 TYR HB3 H N N 560 TYR HD1 H N N 561 TYR HD2 H N N 562 TYR HE1 H N N 563 TYR HE2 H N N 564 TYR HH H N N 565 TYR HXT H N N 566 VAL N N N N 567 VAL CA C N S 568 VAL C C N N 569 VAL O O N N 570 VAL CB C N N 571 VAL CG1 C N N 572 VAL CG2 C N N 573 VAL OXT O N N 574 VAL H H N N 575 VAL H2 H N N 576 VAL HA H N N 577 VAL HB H N N 578 VAL HG11 H N N 579 VAL HG12 H N N 580 VAL HG13 H N N 581 VAL HG21 H N N 582 VAL HG22 H N N 583 VAL HG23 H N N 584 VAL HXT H N N 585 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 EDO C1 O1 sing N N 107 EDO C1 C2 sing N N 108 EDO C1 H11 sing N N 109 EDO C1 H12 sing N N 110 EDO O1 HO1 sing N N 111 EDO C2 O2 sing N N 112 EDO C2 H21 sing N N 113 EDO C2 H22 sing N N 114 EDO O2 HO2 sing N N 115 FUC C1 C2 sing N N 116 FUC C1 O1 sing N N 117 FUC C1 O5 sing N N 118 FUC C1 H1 sing N N 119 FUC C2 C3 sing N N 120 FUC C2 O2 sing N N 121 FUC C2 H2 sing N N 122 FUC C3 C4 sing N N 123 FUC C3 O3 sing N N 124 FUC C3 H3 sing N N 125 FUC C4 C5 sing N N 126 FUC C4 O4 sing N N 127 FUC C4 H4 sing N N 128 FUC C5 C6 sing N N 129 FUC C5 O5 sing N N 130 FUC C5 H5 sing N N 131 FUC C6 H61 sing N N 132 FUC C6 H62 sing N N 133 FUC C6 H63 sing N N 134 FUC O1 HO1 sing N N 135 FUC O2 HO2 sing N N 136 FUC O3 HO3 sing N N 137 FUC O4 HO4 sing N N 138 GAL C1 C2 sing N N 139 GAL C1 O1 sing N N 140 GAL C1 O5 sing N N 141 GAL C1 H1 sing N N 142 GAL C2 C3 sing N N 143 GAL C2 O2 sing N N 144 GAL C2 H2 sing N N 145 GAL C3 C4 sing N N 146 GAL C3 O3 sing N N 147 GAL C3 H3 sing N N 148 GAL C4 C5 sing N N 149 GAL C4 O4 sing N N 150 GAL C4 H4 sing N N 151 GAL C5 C6 sing N N 152 GAL C5 O5 sing N N 153 GAL C5 H5 sing N N 154 GAL C6 O6 sing N N 155 GAL C6 H61 sing N N 156 GAL C6 H62 sing N N 157 GAL O1 HO1 sing N N 158 GAL O2 HO2 sing N N 159 GAL O3 HO3 sing N N 160 GAL O4 HO4 sing N N 161 GAL O6 HO6 sing N N 162 GLN N CA sing N N 163 GLN N H sing N N 164 GLN N H2 sing N N 165 GLN CA C sing N N 166 GLN CA CB sing N N 167 GLN CA HA sing N N 168 GLN C O doub N N 169 GLN C OXT sing N N 170 GLN CB CG sing N N 171 GLN CB HB2 sing N N 172 GLN CB HB3 sing N N 173 GLN CG CD sing N N 174 GLN CG HG2 sing N N 175 GLN CG HG3 sing N N 176 GLN CD OE1 doub N N 177 GLN CD NE2 sing N N 178 GLN NE2 HE21 sing N N 179 GLN NE2 HE22 sing N N 180 GLN OXT HXT sing N N 181 GLU N CA sing N N 182 GLU N H sing N N 183 GLU N H2 sing N N 184 GLU CA C sing N N 185 GLU CA CB sing N N 186 GLU CA HA sing N N 187 GLU C O doub N N 188 GLU C OXT sing N N 189 GLU CB CG sing N N 190 GLU CB HB2 sing N N 191 GLU CB HB3 sing N N 192 GLU CG CD sing N N 193 GLU CG HG2 sing N N 194 GLU CG HG3 sing N N 195 GLU CD OE1 doub N N 196 GLU CD OE2 sing N N 197 GLU OE2 HE2 sing N N 198 GLU OXT HXT sing N N 199 GLY N CA sing N N 200 GLY N H sing N N 201 GLY N H2 sing N N 202 GLY CA C sing N N 203 GLY CA HA2 sing N N 204 GLY CA HA3 sing N N 205 GLY C O doub N N 206 GLY C OXT sing N N 207 GLY OXT HXT sing N N 208 HIS N CA sing N N 209 HIS N H sing N N 210 HIS N H2 sing N N 211 HIS CA C sing N N 212 HIS CA CB sing N N 213 HIS CA HA sing N N 214 HIS C O doub N N 215 HIS C OXT sing N N 216 HIS CB CG sing N N 217 HIS CB HB2 sing N N 218 HIS CB HB3 sing N N 219 HIS CG ND1 sing Y N 220 HIS CG CD2 doub Y N 221 HIS ND1 CE1 doub Y N 222 HIS ND1 HD1 sing N N 223 HIS CD2 NE2 sing Y N 224 HIS CD2 HD2 sing N N 225 HIS CE1 NE2 sing Y N 226 HIS CE1 HE1 sing N N 227 HIS NE2 HE2 sing N N 228 HIS OXT HXT sing N N 229 HOH O H1 sing N N 230 HOH O H2 sing N N 231 IDS C1 C2 sing N N 232 IDS C1 O1 sing N N 233 IDS C1 O5 sing N N 234 IDS C1 H1 sing N N 235 IDS C2 C3 sing N N 236 IDS C2 O2 sing N N 237 IDS C2 H2 sing N N 238 IDS C3 C4 sing N N 239 IDS C3 O3 sing N N 240 IDS C3 H3 sing N N 241 IDS C4 C5 sing N N 242 IDS C4 O4 sing N N 243 IDS C4 H4 sing N N 244 IDS C5 C6 sing N N 245 IDS C5 O5 sing N N 246 IDS C5 H5 sing N N 247 IDS C6 O6A doub N N 248 IDS C6 O6B sing N N 249 IDS O1 HO1 sing N N 250 IDS O2 S sing N N 251 IDS O3 HO3 sing N N 252 IDS O4 HO4 sing N N 253 IDS O6B HO6B sing N N 254 IDS S O1S doub N N 255 IDS S O2S doub N N 256 IDS S O3S sing N N 257 IDS O3S HOS3 sing N N 258 ILE N CA sing N N 259 ILE N H sing N N 260 ILE N H2 sing N N 261 ILE CA C sing N N 262 ILE CA CB sing N N 263 ILE CA HA sing N N 264 ILE C O doub N N 265 ILE C OXT sing N N 266 ILE CB CG1 sing N N 267 ILE CB CG2 sing N N 268 ILE CB HB sing N N 269 ILE CG1 CD1 sing N N 270 ILE CG1 HG12 sing N N 271 ILE CG1 HG13 sing N N 272 ILE CG2 HG21 sing N N 273 ILE CG2 HG22 sing N N 274 ILE CG2 HG23 sing N N 275 ILE CD1 HD11 sing N N 276 ILE CD1 HD12 sing N N 277 ILE CD1 HD13 sing N N 278 ILE OXT HXT sing N N 279 LEU N CA sing N N 280 LEU N H sing N N 281 LEU N H2 sing N N 282 LEU CA C sing N N 283 LEU CA CB sing N N 284 LEU CA HA sing N N 285 LEU C O doub N N 286 LEU C OXT sing N N 287 LEU CB CG sing N N 288 LEU CB HB2 sing N N 289 LEU CB HB3 sing N N 290 LEU CG CD1 sing N N 291 LEU CG CD2 sing N N 292 LEU CG HG sing N N 293 LEU CD1 HD11 sing N N 294 LEU CD1 HD12 sing N N 295 LEU CD1 HD13 sing N N 296 LEU CD2 HD21 sing N N 297 LEU CD2 HD22 sing N N 298 LEU CD2 HD23 sing N N 299 LEU OXT HXT sing N N 300 LYS N CA sing N N 301 LYS N H sing N N 302 LYS N H2 sing N N 303 LYS CA C sing N N 304 LYS CA CB sing N N 305 LYS CA HA sing N N 306 LYS C O doub N N 307 LYS C OXT sing N N 308 LYS CB CG sing N N 309 LYS CB HB2 sing N N 310 LYS CB HB3 sing N N 311 LYS CG CD sing N N 312 LYS CG HG2 sing N N 313 LYS CG HG3 sing N N 314 LYS CD CE sing N N 315 LYS CD HD2 sing N N 316 LYS CD HD3 sing N N 317 LYS CE NZ sing N N 318 LYS CE HE2 sing N N 319 LYS CE HE3 sing N N 320 LYS NZ HZ1 sing N N 321 LYS NZ HZ2 sing N N 322 LYS NZ HZ3 sing N N 323 LYS OXT HXT sing N N 324 MAN C1 C2 sing N N 325 MAN C1 O1 sing N N 326 MAN C1 O5 sing N N 327 MAN C1 H1 sing N N 328 MAN C2 C3 sing N N 329 MAN C2 O2 sing N N 330 MAN C2 H2 sing N N 331 MAN C3 C4 sing N N 332 MAN C3 O3 sing N N 333 MAN C3 H3 sing N N 334 MAN C4 C5 sing N N 335 MAN C4 O4 sing N N 336 MAN C4 H4 sing N N 337 MAN C5 C6 sing N N 338 MAN C5 O5 sing N N 339 MAN C5 H5 sing N N 340 MAN C6 O6 sing N N 341 MAN C6 H61 sing N N 342 MAN C6 H62 sing N N 343 MAN O1 HO1 sing N N 344 MAN O2 HO2 sing N N 345 MAN O3 HO3 sing N N 346 MAN O4 HO4 sing N N 347 MAN O6 HO6 sing N N 348 MET N CA sing N N 349 MET N H sing N N 350 MET N H2 sing N N 351 MET CA C sing N N 352 MET CA CB sing N N 353 MET CA HA sing N N 354 MET C O doub N N 355 MET C OXT sing N N 356 MET CB CG sing N N 357 MET CB HB2 sing N N 358 MET CB HB3 sing N N 359 MET CG SD sing N N 360 MET CG HG2 sing N N 361 MET CG HG3 sing N N 362 MET SD CE sing N N 363 MET CE HE1 sing N N 364 MET CE HE2 sing N N 365 MET CE HE3 sing N N 366 MET OXT HXT sing N N 367 NAG C1 C2 sing N N 368 NAG C1 O1 sing N N 369 NAG C1 O5 sing N N 370 NAG C1 H1 sing N N 371 NAG C2 C3 sing N N 372 NAG C2 N2 sing N N 373 NAG C2 H2 sing N N 374 NAG C3 C4 sing N N 375 NAG C3 O3 sing N N 376 NAG C3 H3 sing N N 377 NAG C4 C5 sing N N 378 NAG C4 O4 sing N N 379 NAG C4 H4 sing N N 380 NAG C5 C6 sing N N 381 NAG C5 O5 sing N N 382 NAG C5 H5 sing N N 383 NAG C6 O6 sing N N 384 NAG C6 H61 sing N N 385 NAG C6 H62 sing N N 386 NAG C7 C8 sing N N 387 NAG C7 N2 sing N N 388 NAG C7 O7 doub N N 389 NAG C8 H81 sing N N 390 NAG C8 H82 sing N N 391 NAG C8 H83 sing N N 392 NAG N2 HN2 sing N N 393 NAG O1 HO1 sing N N 394 NAG O3 HO3 sing N N 395 NAG O4 HO4 sing N N 396 NAG O6 HO6 sing N N 397 PHE N CA sing N N 398 PHE N H sing N N 399 PHE N H2 sing N N 400 PHE CA C sing N N 401 PHE CA CB sing N N 402 PHE CA HA sing N N 403 PHE C O doub N N 404 PHE C OXT sing N N 405 PHE CB CG sing N N 406 PHE CB HB2 sing N N 407 PHE CB HB3 sing N N 408 PHE CG CD1 doub Y N 409 PHE CG CD2 sing Y N 410 PHE CD1 CE1 sing Y N 411 PHE CD1 HD1 sing N N 412 PHE CD2 CE2 doub Y N 413 PHE CD2 HD2 sing N N 414 PHE CE1 CZ doub Y N 415 PHE CE1 HE1 sing N N 416 PHE CE2 CZ sing Y N 417 PHE CE2 HE2 sing N N 418 PHE CZ HZ sing N N 419 PHE OXT HXT sing N N 420 PRO N CA sing N N 421 PRO N CD sing N N 422 PRO N H sing N N 423 PRO CA C sing N N 424 PRO CA CB sing N N 425 PRO CA HA sing N N 426 PRO C O doub N N 427 PRO C OXT sing N N 428 PRO CB CG sing N N 429 PRO CB HB2 sing N N 430 PRO CB HB3 sing N N 431 PRO CG CD sing N N 432 PRO CG HG2 sing N N 433 PRO CG HG3 sing N N 434 PRO CD HD2 sing N N 435 PRO CD HD3 sing N N 436 PRO OXT HXT sing N N 437 SER N CA sing N N 438 SER N H sing N N 439 SER N H2 sing N N 440 SER CA C sing N N 441 SER CA CB sing N N 442 SER CA HA sing N N 443 SER C O doub N N 444 SER C OXT sing N N 445 SER CB OG sing N N 446 SER CB HB2 sing N N 447 SER CB HB3 sing N N 448 SER OG HG sing N N 449 SER OXT HXT sing N N 450 SGN C1 C2 sing N N 451 SGN C1 O1 sing N N 452 SGN C1 O5 sing N N 453 SGN C1 H1 sing N N 454 SGN C2 C3 sing N N 455 SGN C2 N2 sing N N 456 SGN C2 H2 sing N N 457 SGN C3 C4 sing N N 458 SGN C3 O3 sing N N 459 SGN C3 H3 sing N N 460 SGN C4 C5 sing N N 461 SGN C4 O4 sing N N 462 SGN C4 H4 sing N N 463 SGN C5 C6 sing N N 464 SGN C5 O5 sing N N 465 SGN C5 H5 sing N N 466 SGN C6 O6 sing N N 467 SGN C6 H61 sing N N 468 SGN C6 H62 sing N N 469 SGN N2 S1 sing N N 470 SGN N2 HN21 sing N N 471 SGN O1 HO1 sing N N 472 SGN O3 HO3 sing N N 473 SGN O4 HO4 sing N N 474 SGN O6 S2 sing N N 475 SGN S1 O1S doub N N 476 SGN S1 O2S doub N N 477 SGN S1 O3S sing N N 478 SGN O3S HOS3 sing N N 479 SGN S2 O4S doub N N 480 SGN S2 O5S doub N N 481 SGN S2 O6S sing N N 482 SGN O6S HOS6 sing N N 483 THR N CA sing N N 484 THR N H sing N N 485 THR N H2 sing N N 486 THR CA C sing N N 487 THR CA CB sing N N 488 THR CA HA sing N N 489 THR C O doub N N 490 THR C OXT sing N N 491 THR CB OG1 sing N N 492 THR CB CG2 sing N N 493 THR CB HB sing N N 494 THR OG1 HG1 sing N N 495 THR CG2 HG21 sing N N 496 THR CG2 HG22 sing N N 497 THR CG2 HG23 sing N N 498 THR OXT HXT sing N N 499 TRP N CA sing N N 500 TRP N H sing N N 501 TRP N H2 sing N N 502 TRP CA C sing N N 503 TRP CA CB sing N N 504 TRP CA HA sing N N 505 TRP C O doub N N 506 TRP C OXT sing N N 507 TRP CB CG sing N N 508 TRP CB HB2 sing N N 509 TRP CB HB3 sing N N 510 TRP CG CD1 doub Y N 511 TRP CG CD2 sing Y N 512 TRP CD1 NE1 sing Y N 513 TRP CD1 HD1 sing N N 514 TRP CD2 CE2 doub Y N 515 TRP CD2 CE3 sing Y N 516 TRP NE1 CE2 sing Y N 517 TRP NE1 HE1 sing N N 518 TRP CE2 CZ2 sing Y N 519 TRP CE3 CZ3 doub Y N 520 TRP CE3 HE3 sing N N 521 TRP CZ2 CH2 doub Y N 522 TRP CZ2 HZ2 sing N N 523 TRP CZ3 CH2 sing Y N 524 TRP CZ3 HZ3 sing N N 525 TRP CH2 HH2 sing N N 526 TRP OXT HXT sing N N 527 TYR N CA sing N N 528 TYR N H sing N N 529 TYR N H2 sing N N 530 TYR CA C sing N N 531 TYR CA CB sing N N 532 TYR CA HA sing N N 533 TYR C O doub N N 534 TYR C OXT sing N N 535 TYR CB CG sing N N 536 TYR CB HB2 sing N N 537 TYR CB HB3 sing N N 538 TYR CG CD1 doub Y N 539 TYR CG CD2 sing Y N 540 TYR CD1 CE1 sing Y N 541 TYR CD1 HD1 sing N N 542 TYR CD2 CE2 doub Y N 543 TYR CD2 HD2 sing N N 544 TYR CE1 CZ doub Y N 545 TYR CE1 HE1 sing N N 546 TYR CE2 CZ sing Y N 547 TYR CE2 HE2 sing N N 548 TYR CZ OH sing N N 549 TYR OH HH sing N N 550 TYR OXT HXT sing N N 551 VAL N CA sing N N 552 VAL N H sing N N 553 VAL N H2 sing N N 554 VAL CA C sing N N 555 VAL CA CB sing N N 556 VAL CA HA sing N N 557 VAL C O doub N N 558 VAL C OXT sing N N 559 VAL CB CG1 sing N N 560 VAL CB CG2 sing N N 561 VAL CB HB sing N N 562 VAL CG1 HG11 sing N N 563 VAL CG1 HG12 sing N N 564 VAL CG1 HG13 sing N N 565 VAL CG2 HG21 sing N N 566 VAL CG2 HG22 sing N N 567 VAL CG2 HG23 sing N N 568 VAL OXT HXT sing N N 569 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)' 'United States' ZIC-ES102645 1 'National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR)' 'United States' R01DE031273 2 'National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)' 'United States' R01AR070179 3 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n 2 GAL 6 n 2 MAN 7 n 2 FUC 8 n 3 SGN 1 n 3 IDS 2 n 3 SGN 3 n 3 IDS 4 n 3 SGN 5 n 3 IDS 6 n 3 SGN 7 n 3 IDS 8 n 3 SGN 9 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3c9e _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 41 2 2' _space_group.name_Hall 'P 4w 2c' _space_group.IT_number 91 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 8V58 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008937 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008937 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008572 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.99627 ? ? ? 14.84254 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_