HEADER DE NOVO PROTEIN 08-DEC-23 8V9O TITLE IMAGING SCAFFOLD ENGINEERED TO BIND THE THERAPEUTIC PROTEIN TARGET TITLE 2 BARD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRAHEDRAL NANOCAGE CAGE, NON-FUSION COMPONENT; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TETRAHEDRAL NANOCAGE CAGE COMPONENT FUSED TO ANTI-BARD1 COMPND 7 DARPIN; COMPND 8 CHAIN: D, E, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: GOLD; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PSAM; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: GOLD; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS NANOHEDRA, PROTEIN CAGE, TETRAHEDRAL, DARPIN, IMAGING SCAFFOLD, DE KEYWDS 2 NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.P.AGDANOWSKI,R.CASTELLS-GRAELLS,M.R.SAWAYA,T.O.YEATES,M.A.ARBING REVDAT 3 12-JUN-24 8V9O 1 JRNL REVDAT 2 05-JUN-24 8V9O 1 JRNL REVDAT 1 15-MAY-24 8V9O 0 JRNL AUTH M.P.AGDANOWSKI,R.CASTELLS-GRAELLS,M.R.SAWAYA,D.CASCIO, JRNL AUTH 2 T.O.YEATES,M.A.ARBING JRNL TITL X-RAY CRYSTAL STRUCTURE OF A DESIGNED RIGIDIFIED IMAGING JRNL TITL 2 SCAFFOLD IN THE LIGAND-FREE CONFORMATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 80 107 2024 JRNL REFN ESSN 2053-230X JRNL PMID 38767964 JRNL DOI 10.1107/S2053230X2400414X REMARK 2 REMARK 2 RESOLUTION. 3.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9900 - 9.9200 0.99 1335 148 0.1324 0.1916 REMARK 3 2 9.9200 - 8.0400 1.00 1305 145 0.1322 0.1539 REMARK 3 3 8.0400 - 7.0800 1.00 1288 143 0.1580 0.1679 REMARK 3 4 7.0700 - 6.4500 1.00 1290 144 0.1972 0.2247 REMARK 3 5 6.4500 - 6.0000 1.00 1276 142 0.2360 0.2699 REMARK 3 6 6.0000 - 5.6600 1.00 1263 140 0.2360 0.2632 REMARK 3 7 5.6600 - 5.3800 1.00 1286 143 0.2371 0.2813 REMARK 3 8 5.3800 - 5.1500 1.00 1267 141 0.2410 0.2856 REMARK 3 9 5.1500 - 4.9500 1.00 1240 137 0.2358 0.2706 REMARK 3 10 4.9500 - 4.7900 1.00 1273 142 0.2229 0.2576 REMARK 3 11 4.7900 - 4.6400 1.00 1271 141 0.2251 0.2577 REMARK 3 12 4.6400 - 4.5100 1.00 1270 141 0.2341 0.2640 REMARK 3 13 4.5100 - 4.3900 1.00 1241 137 0.2439 0.2787 REMARK 3 14 4.3900 - 4.2800 1.00 1253 140 0.2450 0.2889 REMARK 3 15 4.2800 - 4.1900 1.00 1257 140 0.2492 0.2950 REMARK 3 16 4.1900 - 4.1000 1.00 1249 139 0.2627 0.2695 REMARK 3 17 4.1000 - 4.0200 1.00 1263 140 0.2832 0.3732 REMARK 3 18 4.0200 - 3.9400 1.00 1259 140 0.3003 0.3220 REMARK 3 19 3.9400 - 3.8700 1.00 1229 137 0.3163 0.2877 REMARK 3 20 3.8700 - 3.8100 0.92 1157 126 0.3263 0.3274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.437 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 161.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 188.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 10783 REMARK 3 ANGLE : 0.607 14558 REMARK 3 CHIRALITY : 0.039 1694 REMARK 3 PLANARITY : 0.003 1877 REMARK 3 DIHEDRAL : 12.525 4009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.7513 32.2335 32.2316 REMARK 3 T TENSOR REMARK 3 T11: 0.0 T22: 0.0 REMARK 3 T33: 0.0 T12: 0.0 REMARK 3 T13: 0.0 T23: 0.0 REMARK 3 L TENSOR REMARK 3 L11: 0.0 L22: 0.0 REMARK 3 L33: 0.0 L12: 0.0 REMARK 3 L13: 0.0 L23: 0.0 REMARK 3 S TENSOR REMARK 3 S11: 0.0 S12: 0.0 S13: 0.0 REMARK 3 S21: 0.0 S22: 0.0 S23: 0.0 REMARK 3 S31: 0.0 S32: 0.0 S33: 0.0 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 14 through 169) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 14 through 169) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and resid 23 through 321) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "E" and resid 23 through 321) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "F" and resid 23 through 321) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000278412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28155 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.810 REMARK 200 RESOLUTION RANGE LOW (A) : 19.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.05100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.14M CALCIUM CHLORIDE , 0.07M SODIUM REMARK 280 ACETATE 4.6 , 14% V/V ISOPROPANOL , 30% V/V GLYCEROL, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 97.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 114.18500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 64.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 114.18500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 64.00500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 114.18500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 64.00500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 97.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.18500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ILE B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 LYS B 6 REMARK 465 VAL B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 THR B 13 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 ILE C 3 REMARK 465 THR C 4 REMARK 465 THR C 5 REMARK 465 LYS C 6 REMARK 465 VAL C 7 REMARK 465 GLY C 8 REMARK 465 ASP C 9 REMARK 465 LYS C 10 REMARK 465 GLY C 11 REMARK 465 SER C 12 REMARK 465 THR C 13 REMARK 465 VAL C 170 REMARK 465 ARG C 171 REMARK 465 SER C 172 REMARK 465 HIS C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 MET D 1 REMARK 465 PHE D 2 REMARK 465 THR D 3 REMARK 465 ARG D 4 REMARK 465 ARG D 5 REMARK 465 GLY D 6 REMARK 465 ASP D 7 REMARK 465 GLN D 8 REMARK 465 GLY D 9 REMARK 465 GLU D 10 REMARK 465 THR D 11 REMARK 465 ASP D 12 REMARK 465 LEU D 13 REMARK 465 ALA D 14 REMARK 465 ASN D 15 REMARK 465 ARG D 16 REMARK 465 ALA D 17 REMARK 465 ARG D 18 REMARK 465 VAL D 19 REMARK 465 GLY D 20 REMARK 465 LYS D 21 REMARK 465 MET E 1 REMARK 465 PHE E 2 REMARK 465 THR E 3 REMARK 465 ARG E 4 REMARK 465 ARG E 5 REMARK 465 GLY E 6 REMARK 465 ASP E 7 REMARK 465 GLN E 8 REMARK 465 GLY E 9 REMARK 465 GLU E 10 REMARK 465 THR E 11 REMARK 465 ASP E 12 REMARK 465 LEU E 13 REMARK 465 ALA E 14 REMARK 465 ASN E 15 REMARK 465 ARG E 16 REMARK 465 ALA E 17 REMARK 465 ARG E 18 REMARK 465 VAL E 19 REMARK 465 GLY E 20 REMARK 465 LYS E 21 REMARK 465 ASP E 22 REMARK 465 ALA E 322 REMARK 465 MET F 1 REMARK 465 PHE F 2 REMARK 465 THR F 3 REMARK 465 ARG F 4 REMARK 465 ARG F 5 REMARK 465 GLY F 6 REMARK 465 ASP F 7 REMARK 465 GLN F 8 REMARK 465 GLY F 9 REMARK 465 GLU F 10 REMARK 465 THR F 11 REMARK 465 ASP F 12 REMARK 465 LEU F 13 REMARK 465 ALA F 14 REMARK 465 ASN F 15 REMARK 465 ARG F 16 REMARK 465 ALA F 17 REMARK 465 ARG F 18 REMARK 465 VAL F 19 REMARK 465 GLY F 20 REMARK 465 LYS F 21 REMARK 465 ALA F 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 296 -169.76 -75.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE2 REMARK 620 2 GLU B 36 OE2 117.7 REMARK 620 3 GLU C 36 OE2 104.1 108.6 REMARK 620 N 1 2 DBREF 8V9O A 1 178 PDB 8V9O 8V9O 1 178 DBREF 8V9O B 1 178 PDB 8V9O 8V9O 1 178 DBREF 8V9O C 1 178 PDB 8V9O 8V9O 1 178 DBREF 8V9O D 1 322 PDB 8V9O 8V9O 1 322 DBREF 8V9O E 1 322 PDB 8V9O 8V9O 1 322 DBREF 8V9O F 1 322 PDB 8V9O 8V9O 1 322 SEQRES 1 A 178 MET ARG ILE THR THR LYS VAL GLY ASP LYS GLY SER THR SEQRES 2 A 178 ARG LEU PHE GLY GLY GLU GLU VAL TRP LYS ASP ASP PRO SEQRES 3 A 178 ILE ILE GLU ALA ASN GLY THR LEU ASP GLU LEU THR SER SEQRES 4 A 178 PHE ILE GLY GLU ALA LYS HIS TYR VAL ASP GLU GLU MET SEQRES 5 A 178 LYS GLY ILE LEU GLU GLU ILE GLN ASN ASP ILE TYR LYS SEQRES 6 A 178 ILE MET GLY GLU ILE GLY SER LYS GLY LYS ILE GLU GLY SEQRES 7 A 178 ILE SER GLU GLU ARG ILE LYS TRP LEU ALA GLY LEU ILE SEQRES 8 A 178 GLU ARG TYR SER GLU MET VAL ASN LYS LEU SER PHE VAL SEQRES 9 A 178 LEU PRO GLY GLY THR LEU GLU SER ALA LYS LEU ASP VAL SEQRES 10 A 178 CYS ARG THR ILE ALA ARG ARG ALA GLU ARG LYS VAL ALA SEQRES 11 A 178 THR VAL LEU ARG GLU PHE GLY ILE GLY THR LEU ALA ALA SEQRES 12 A 178 ILE TYR LEU ALA LEU LEU SER ARG LEU LEU PHE LEU LEU SEQRES 13 A 178 ALA ARG VAL ILE GLU ILE GLU LYS ASN LYS LEU LYS GLU SEQRES 14 A 178 VAL ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 178 MET ARG ILE THR THR LYS VAL GLY ASP LYS GLY SER THR SEQRES 2 B 178 ARG LEU PHE GLY GLY GLU GLU VAL TRP LYS ASP ASP PRO SEQRES 3 B 178 ILE ILE GLU ALA ASN GLY THR LEU ASP GLU LEU THR SER SEQRES 4 B 178 PHE ILE GLY GLU ALA LYS HIS TYR VAL ASP GLU GLU MET SEQRES 5 B 178 LYS GLY ILE LEU GLU GLU ILE GLN ASN ASP ILE TYR LYS SEQRES 6 B 178 ILE MET GLY GLU ILE GLY SER LYS GLY LYS ILE GLU GLY SEQRES 7 B 178 ILE SER GLU GLU ARG ILE LYS TRP LEU ALA GLY LEU ILE SEQRES 8 B 178 GLU ARG TYR SER GLU MET VAL ASN LYS LEU SER PHE VAL SEQRES 9 B 178 LEU PRO GLY GLY THR LEU GLU SER ALA LYS LEU ASP VAL SEQRES 10 B 178 CYS ARG THR ILE ALA ARG ARG ALA GLU ARG LYS VAL ALA SEQRES 11 B 178 THR VAL LEU ARG GLU PHE GLY ILE GLY THR LEU ALA ALA SEQRES 12 B 178 ILE TYR LEU ALA LEU LEU SER ARG LEU LEU PHE LEU LEU SEQRES 13 B 178 ALA ARG VAL ILE GLU ILE GLU LYS ASN LYS LEU LYS GLU SEQRES 14 B 178 VAL ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 178 MET ARG ILE THR THR LYS VAL GLY ASP LYS GLY SER THR SEQRES 2 C 178 ARG LEU PHE GLY GLY GLU GLU VAL TRP LYS ASP ASP PRO SEQRES 3 C 178 ILE ILE GLU ALA ASN GLY THR LEU ASP GLU LEU THR SER SEQRES 4 C 178 PHE ILE GLY GLU ALA LYS HIS TYR VAL ASP GLU GLU MET SEQRES 5 C 178 LYS GLY ILE LEU GLU GLU ILE GLN ASN ASP ILE TYR LYS SEQRES 6 C 178 ILE MET GLY GLU ILE GLY SER LYS GLY LYS ILE GLU GLY SEQRES 7 C 178 ILE SER GLU GLU ARG ILE LYS TRP LEU ALA GLY LEU ILE SEQRES 8 C 178 GLU ARG TYR SER GLU MET VAL ASN LYS LEU SER PHE VAL SEQRES 9 C 178 LEU PRO GLY GLY THR LEU GLU SER ALA LYS LEU ASP VAL SEQRES 10 C 178 CYS ARG THR ILE ALA ARG ARG ALA GLU ARG LYS VAL ALA SEQRES 11 C 178 THR VAL LEU ARG GLU PHE GLY ILE GLY THR LEU ALA ALA SEQRES 12 C 178 ILE TYR LEU ALA LEU LEU SER ARG LEU LEU PHE LEU LEU SEQRES 13 C 178 ALA ARG VAL ILE GLU ILE GLU LYS ASN LYS LEU LYS GLU SEQRES 14 C 178 VAL ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 322 MET PHE THR ARG ARG GLY ASP GLN GLY GLU THR ASP LEU SEQRES 2 D 322 ALA ASN ARG ALA ARG VAL GLY LYS ASP SER PRO VAL VAL SEQRES 3 D 322 GLU VAL GLN GLY THR ILE ASP GLU LEU ASN SER PHE ILE SEQRES 4 D 322 GLY TYR ALA LEU VAL LEU SER ARG TRP ASP ASP ILE ARG SEQRES 5 D 322 ASN ASP LEU PHE ARG ILE GLN ASN ASP LEU PHE VAL LEU SEQRES 6 D 322 GLY GLU ASP VAL SER THR GLY GLY LYS GLY ARG THR VAL SEQRES 7 D 322 THR MET ASP MET ILE ILE TYR LEU ILE LYS ARG SER VAL SEQRES 8 D 322 GLU MET LYS ALA GLU ILE GLY LYS ILE GLU LEU PHE VAL SEQRES 9 D 322 VAL PRO GLY GLY SER VAL GLU SER ALA SER LEU HIS MET SEQRES 10 D 322 ALA ARG ALA VAL SER ARG ARG LEU GLU ARG ARG ILE LYS SEQRES 11 D 322 ALA ALA SER GLU LEU THR GLU ILE ASN ALA ASN VAL LEU SEQRES 12 D 322 LEU TYR ALA ASN MET LEU SER ASN ILE LEU PHE MET HIS SEQRES 13 D 322 ALA LEU ILE SER ASN LYS ARG LYS GLU GLU LEU ASP LYS SEQRES 14 D 322 LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN ASP ASP GLU SEQRES 15 D 322 VAL ALA ALA LEU LEU ALA LYS GLY ALA ASP VAL ASN ALA SEQRES 16 D 322 SER ASP TYR LYS GLY THR THR PRO LEU HIS VAL ALA ALA SEQRES 17 D 322 TRP ASN GLY HIS LEU GLU ILE VAL ASP VAL LEU LEU ALA SEQRES 18 D 322 ARG GLY ALA ASP ILE ASN ALA SER ASP SER TYR GLY ASP SEQRES 19 D 322 THR PRO LEU HIS LEU ALA ALA ASN TYR GLY HIS LEU GLU SEQRES 20 D 322 ILE VAL ASP LEU LEU LEU ARG TRP GLY ALA ASP VAL ASN SEQRES 21 D 322 ALA SER ASP SER SER GLY LYS THR PRO LEU HIS LEU ALA SEQRES 22 D 322 ALA GLN ASP GLY HIS LEU GLU ILE VAL ASP VAL LEU LEU SEQRES 23 D 322 ALA HIS GLY ALA ASP VAL ASN ALA GLN ASP LYS PHE GLY SEQRES 24 D 322 LYS THR PRO PHE ASP LEU ALA ILE ASP ASN GLY ASN GLU SEQRES 25 D 322 ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA SEQRES 1 E 322 MET PHE THR ARG ARG GLY ASP GLN GLY GLU THR ASP LEU SEQRES 2 E 322 ALA ASN ARG ALA ARG VAL GLY LYS ASP SER PRO VAL VAL SEQRES 3 E 322 GLU VAL GLN GLY THR ILE ASP GLU LEU ASN SER PHE ILE SEQRES 4 E 322 GLY TYR ALA LEU VAL LEU SER ARG TRP ASP ASP ILE ARG SEQRES 5 E 322 ASN ASP LEU PHE ARG ILE GLN ASN ASP LEU PHE VAL LEU SEQRES 6 E 322 GLY GLU ASP VAL SER THR GLY GLY LYS GLY ARG THR VAL SEQRES 7 E 322 THR MET ASP MET ILE ILE TYR LEU ILE LYS ARG SER VAL SEQRES 8 E 322 GLU MET LYS ALA GLU ILE GLY LYS ILE GLU LEU PHE VAL SEQRES 9 E 322 VAL PRO GLY GLY SER VAL GLU SER ALA SER LEU HIS MET SEQRES 10 E 322 ALA ARG ALA VAL SER ARG ARG LEU GLU ARG ARG ILE LYS SEQRES 11 E 322 ALA ALA SER GLU LEU THR GLU ILE ASN ALA ASN VAL LEU SEQRES 12 E 322 LEU TYR ALA ASN MET LEU SER ASN ILE LEU PHE MET HIS SEQRES 13 E 322 ALA LEU ILE SER ASN LYS ARG LYS GLU GLU LEU ASP LYS SEQRES 14 E 322 LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN ASP ASP GLU SEQRES 15 E 322 VAL ALA ALA LEU LEU ALA LYS GLY ALA ASP VAL ASN ALA SEQRES 16 E 322 SER ASP TYR LYS GLY THR THR PRO LEU HIS VAL ALA ALA SEQRES 17 E 322 TRP ASN GLY HIS LEU GLU ILE VAL ASP VAL LEU LEU ALA SEQRES 18 E 322 ARG GLY ALA ASP ILE ASN ALA SER ASP SER TYR GLY ASP SEQRES 19 E 322 THR PRO LEU HIS LEU ALA ALA ASN TYR GLY HIS LEU GLU SEQRES 20 E 322 ILE VAL ASP LEU LEU LEU ARG TRP GLY ALA ASP VAL ASN SEQRES 21 E 322 ALA SER ASP SER SER GLY LYS THR PRO LEU HIS LEU ALA SEQRES 22 E 322 ALA GLN ASP GLY HIS LEU GLU ILE VAL ASP VAL LEU LEU SEQRES 23 E 322 ALA HIS GLY ALA ASP VAL ASN ALA GLN ASP LYS PHE GLY SEQRES 24 E 322 LYS THR PRO PHE ASP LEU ALA ILE ASP ASN GLY ASN GLU SEQRES 25 E 322 ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA SEQRES 1 F 322 MET PHE THR ARG ARG GLY ASP GLN GLY GLU THR ASP LEU SEQRES 2 F 322 ALA ASN ARG ALA ARG VAL GLY LYS ASP SER PRO VAL VAL SEQRES 3 F 322 GLU VAL GLN GLY THR ILE ASP GLU LEU ASN SER PHE ILE SEQRES 4 F 322 GLY TYR ALA LEU VAL LEU SER ARG TRP ASP ASP ILE ARG SEQRES 5 F 322 ASN ASP LEU PHE ARG ILE GLN ASN ASP LEU PHE VAL LEU SEQRES 6 F 322 GLY GLU ASP VAL SER THR GLY GLY LYS GLY ARG THR VAL SEQRES 7 F 322 THR MET ASP MET ILE ILE TYR LEU ILE LYS ARG SER VAL SEQRES 8 F 322 GLU MET LYS ALA GLU ILE GLY LYS ILE GLU LEU PHE VAL SEQRES 9 F 322 VAL PRO GLY GLY SER VAL GLU SER ALA SER LEU HIS MET SEQRES 10 F 322 ALA ARG ALA VAL SER ARG ARG LEU GLU ARG ARG ILE LYS SEQRES 11 F 322 ALA ALA SER GLU LEU THR GLU ILE ASN ALA ASN VAL LEU SEQRES 12 F 322 LEU TYR ALA ASN MET LEU SER ASN ILE LEU PHE MET HIS SEQRES 13 F 322 ALA LEU ILE SER ASN LYS ARG LYS GLU GLU LEU ASP LYS SEQRES 14 F 322 LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN ASP ASP GLU SEQRES 15 F 322 VAL ALA ALA LEU LEU ALA LYS GLY ALA ASP VAL ASN ALA SEQRES 16 F 322 SER ASP TYR LYS GLY THR THR PRO LEU HIS VAL ALA ALA SEQRES 17 F 322 TRP ASN GLY HIS LEU GLU ILE VAL ASP VAL LEU LEU ALA SEQRES 18 F 322 ARG GLY ALA ASP ILE ASN ALA SER ASP SER TYR GLY ASP SEQRES 19 F 322 THR PRO LEU HIS LEU ALA ALA ASN TYR GLY HIS LEU GLU SEQRES 20 F 322 ILE VAL ASP LEU LEU LEU ARG TRP GLY ALA ASP VAL ASN SEQRES 21 F 322 ALA SER ASP SER SER GLY LYS THR PRO LEU HIS LEU ALA SEQRES 22 F 322 ALA GLN ASP GLY HIS LEU GLU ILE VAL ASP VAL LEU LEU SEQRES 23 F 322 ALA HIS GLY ALA ASP VAL ASN ALA GLN ASP LYS PHE GLY SEQRES 24 F 322 LYS THR PRO PHE ASP LEU ALA ILE ASP ASN GLY ASN GLU SEQRES 25 F 322 ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA HET CA A 401 1 HETNAM CA CALCIUM ION FORMUL 7 CA CA 2+ HELIX 1 AA1 ASP A 25 LYS A 45 1 21 HELIX 2 AA2 ASP A 49 SER A 72 1 24 HELIX 3 AA3 SER A 80 VAL A 98 1 19 HELIX 4 AA4 THR A 109 GLY A 137 1 29 HELIX 5 AA5 GLY A 139 SER A 172 1 34 HELIX 6 AA6 ASP B 25 LYS B 45 1 21 HELIX 7 AA7 ASP B 49 SER B 72 1 24 HELIX 8 AA8 SER B 80 VAL B 98 1 19 HELIX 9 AA9 THR B 109 GLY B 137 1 29 HELIX 10 AB1 GLY B 139 SER B 172 1 34 HELIX 11 AB2 ASP C 25 LYS C 45 1 21 HELIX 12 AB3 ASP C 49 SER C 72 1 24 HELIX 13 AB4 SER C 80 VAL C 98 1 19 HELIX 14 AB5 THR C 109 GLY C 137 1 29 HELIX 15 AB6 GLY C 139 GLU C 169 1 31 HELIX 16 AB7 SER D 23 SER D 46 1 24 HELIX 17 AB8 TRP D 48 GLY D 72 1 25 HELIX 18 AB9 THR D 79 GLY D 98 1 20 HELIX 19 AC1 SER D 109 GLU D 134 1 26 HELIX 20 AC2 ASN D 139 GLY D 178 1 40 HELIX 21 AC3 GLN D 179 LYS D 189 1 11 HELIX 22 AC4 THR D 202 GLY D 211 1 10 HELIX 23 AC5 HIS D 212 GLY D 223 1 12 HELIX 24 AC6 THR D 235 TYR D 243 1 9 HELIX 25 AC7 HIS D 245 TRP D 255 1 11 HELIX 26 AC8 THR D 268 ASP D 276 1 9 HELIX 27 AC9 HIS D 278 HIS D 288 1 11 HELIX 28 AD1 THR D 301 ASN D 309 1 9 HELIX 29 AD2 ASN D 311 LYS D 320 1 10 HELIX 30 AD3 PRO E 24 SER E 46 1 23 HELIX 31 AD4 TRP E 48 GLY E 72 1 25 HELIX 32 AD5 THR E 79 GLY E 98 1 20 HELIX 33 AD6 SER E 109 GLU E 134 1 26 HELIX 34 AD7 ASN E 139 GLY E 178 1 40 HELIX 35 AD8 GLN E 179 LYS E 189 1 11 HELIX 36 AD9 THR E 202 GLY E 211 1 10 HELIX 37 AE1 HIS E 212 GLY E 223 1 12 HELIX 38 AE2 THR E 235 TYR E 243 1 9 HELIX 39 AE3 HIS E 245 TRP E 255 1 11 HELIX 40 AE4 THR E 268 ASP E 276 1 9 HELIX 41 AE5 HIS E 278 HIS E 288 1 11 HELIX 42 AE6 THR E 301 ASN E 309 1 9 HELIX 43 AE7 ASN E 311 ALA E 321 1 11 HELIX 44 AE8 SER F 23 SER F 46 1 24 HELIX 45 AE9 TRP F 48 GLY F 72 1 25 HELIX 46 AF1 THR F 79 GLY F 98 1 20 HELIX 47 AF2 SER F 109 GLU F 134 1 26 HELIX 48 AF3 ASN F 139 GLY F 178 1 40 HELIX 49 AF4 GLN F 179 LYS F 189 1 11 HELIX 50 AF5 THR F 202 GLY F 211 1 10 HELIX 51 AF6 HIS F 212 GLY F 223 1 12 HELIX 52 AF7 THR F 235 TYR F 243 1 9 HELIX 53 AF8 HIS F 245 TRP F 255 1 11 HELIX 54 AF9 THR F 268 ASP F 276 1 9 HELIX 55 AG1 HIS F 278 HIS F 288 1 11 HELIX 56 AG2 THR F 301 ASN F 309 1 9 HELIX 57 AG3 ASN F 311 LYS F 320 1 10 LINK OE2 GLU A 36 CA CA A 401 1555 1555 2.85 LINK CA CA A 401 OE2 GLU B 36 1555 1555 2.83 LINK CA CA A 401 OE2 GLU C 36 1555 1555 3.00 CRYST1 128.010 195.570 228.370 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007812 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005113 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004379 0.00000 MTRIX1 1 -0.018498 -0.999812 -0.005837 -0.13956 1 MTRIX2 1 -0.000107 -0.005836 0.999983 0.51789 1 MTRIX3 1 -0.999829 0.018498 0.000001 -0.78041 1 MTRIX1 2 0.012734 0.008090 -0.999886 -0.25106 1 MTRIX2 2 -0.999880 0.008952 -0.012661 0.10047 1 MTRIX3 2 0.008849 0.999927 0.008203 -0.41217 1 MTRIX1 3 -0.017708 0.999691 -0.017471 1.27580 1 MTRIX2 3 -0.041161 0.016730 0.999012 1.31403 1 MTRIX3 3 0.998996 0.018410 0.040852 -1.51660 1 MTRIX1 4 -0.011336 -0.017576 0.999781 0.73471 1 MTRIX2 4 0.999928 -0.004071 0.011266 -0.14406 1 MTRIX3 4 0.003872 0.999837 0.017621 -0.48027 1