HEADER VIRAL PROTEIN 11-DEC-23 8VAO TITLE SIMULATION-DRIVEN DESIGN OF PREFUSION STABILIZED SARS-COV-2 SPIKE S2 TITLE 2 ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S2; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293F KEYWDS SARS-COV-2, SPIKE PROTEIN, VIRAL FUSION, VIRAL GLYCOPROTEIN, VIRAL KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.ZHOU,J.S.MCLELLAN REVDAT 3 18-SEP-24 8VAO 1 JRNL REVDAT 2 04-SEP-24 8VAO 1 JRNL REVDAT 1 10-JUL-24 8VAO 0 JRNL AUTH X.NUQUI,L.CASALINO,L.ZHOU,M.SHEHATA,A.WANG,A.L.TSE,A.A.OJHA, JRNL AUTH 2 F.L.KEARNS,M.A.ROSENFELD,E.H.MILLER,C.M.ACREMAN,S.H.AHN, JRNL AUTH 3 K.CHANDRAN,J.S.MCLELLAN,R.E.AMARO JRNL TITL SIMULATION-DRIVEN DESIGN OF STABILIZED SARS-COV-2 SPIKE S2 JRNL TITL 2 IMMUNOGENS. JRNL REF NAT COMMUN V. 15 7370 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39191724 JRNL DOI 10.1038/S41467-024-50976-9 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.800 REMARK 3 NUMBER OF PARTICLES : 249447 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279830. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 SPIKE S2 TRIMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 697 REMARK 465 SER A 698 REMARK 465 LEU A 699 REMARK 465 GLY A 700 REMARK 465 ALA A 701 REMARK 465 GLU A 702 REMARK 465 ASN A 703 REMARK 465 LEU A 1141 REMARK 465 GLN A 1142 REMARK 465 PRO A 1143 REMARK 465 GLU A 1144 REMARK 465 LEU A 1145 REMARK 465 ASP A 1146 REMARK 465 SER A 1147 REMARK 465 PHE A 1148 REMARK 465 LYS A 1149 REMARK 465 GLU A 1150 REMARK 465 GLU A 1151 REMARK 465 LEU A 1152 REMARK 465 ASP A 1153 REMARK 465 LYS A 1154 REMARK 465 TYR A 1155 REMARK 465 PHE A 1156 REMARK 465 LYS A 1157 REMARK 465 ASN A 1158 REMARK 465 HIS A 1159 REMARK 465 THR A 1160 REMARK 465 SER A 1161 REMARK 465 PRO A 1162 REMARK 465 ASP A 1163 REMARK 465 VAL A 1164 REMARK 465 ASP A 1165 REMARK 465 LEU A 1166 REMARK 465 GLY A 1167 REMARK 465 ASP A 1168 REMARK 465 ILE A 1169 REMARK 465 SER A 1170 REMARK 465 GLY A 1171 REMARK 465 ILE A 1172 REMARK 465 ASN A 1173 REMARK 465 ALA A 1174 REMARK 465 SER A 1175 REMARK 465 VAL A 1176 REMARK 465 VAL A 1177 REMARK 465 ASN A 1178 REMARK 465 ILE A 1179 REMARK 465 GLN A 1180 REMARK 465 LYS A 1181 REMARK 465 GLU A 1182 REMARK 465 ILE A 1183 REMARK 465 ASP A 1184 REMARK 465 ARG A 1185 REMARK 465 LEU A 1186 REMARK 465 ASN A 1187 REMARK 465 GLU A 1188 REMARK 465 VAL A 1189 REMARK 465 ALA A 1190 REMARK 465 LYS A 1191 REMARK 465 ASN A 1192 REMARK 465 LEU A 1193 REMARK 465 ASN A 1194 REMARK 465 GLU A 1195 REMARK 465 SER A 1196 REMARK 465 LEU A 1197 REMARK 465 ILE A 1198 REMARK 465 ASP A 1199 REMARK 465 LEU A 1200 REMARK 465 GLN A 1201 REMARK 465 GLU A 1202 REMARK 465 LEU A 1203 REMARK 465 GLY A 1204 REMARK 465 LYS A 1205 REMARK 465 TYR A 1206 REMARK 465 GLU A 1207 REMARK 465 GLN A 1208 REMARK 465 MET B 697 REMARK 465 SER B 698 REMARK 465 LEU B 699 REMARK 465 GLY B 700 REMARK 465 ALA B 701 REMARK 465 GLU B 702 REMARK 465 ASN B 703 REMARK 465 LEU B 1141 REMARK 465 GLN B 1142 REMARK 465 PRO B 1143 REMARK 465 GLU B 1144 REMARK 465 LEU B 1145 REMARK 465 ASP B 1146 REMARK 465 SER B 1147 REMARK 465 PHE B 1148 REMARK 465 LYS B 1149 REMARK 465 GLU B 1150 REMARK 465 GLU B 1151 REMARK 465 LEU B 1152 REMARK 465 ASP B 1153 REMARK 465 LYS B 1154 REMARK 465 TYR B 1155 REMARK 465 PHE B 1156 REMARK 465 LYS B 1157 REMARK 465 ASN B 1158 REMARK 465 HIS B 1159 REMARK 465 THR B 1160 REMARK 465 SER B 1161 REMARK 465 PRO B 1162 REMARK 465 ASP B 1163 REMARK 465 VAL B 1164 REMARK 465 ASP B 1165 REMARK 465 LEU B 1166 REMARK 465 GLY B 1167 REMARK 465 ASP B 1168 REMARK 465 ILE B 1169 REMARK 465 SER B 1170 REMARK 465 GLY B 1171 REMARK 465 ILE B 1172 REMARK 465 ASN B 1173 REMARK 465 ALA B 1174 REMARK 465 SER B 1175 REMARK 465 VAL B 1176 REMARK 465 VAL B 1177 REMARK 465 ASN B 1178 REMARK 465 ILE B 1179 REMARK 465 GLN B 1180 REMARK 465 LYS B 1181 REMARK 465 GLU B 1182 REMARK 465 ILE B 1183 REMARK 465 ASP B 1184 REMARK 465 ARG B 1185 REMARK 465 LEU B 1186 REMARK 465 ASN B 1187 REMARK 465 GLU B 1188 REMARK 465 VAL B 1189 REMARK 465 ALA B 1190 REMARK 465 LYS B 1191 REMARK 465 ASN B 1192 REMARK 465 LEU B 1193 REMARK 465 ASN B 1194 REMARK 465 GLU B 1195 REMARK 465 SER B 1196 REMARK 465 LEU B 1197 REMARK 465 ILE B 1198 REMARK 465 ASP B 1199 REMARK 465 LEU B 1200 REMARK 465 GLN B 1201 REMARK 465 GLU B 1202 REMARK 465 LEU B 1203 REMARK 465 GLY B 1204 REMARK 465 LYS B 1205 REMARK 465 TYR B 1206 REMARK 465 GLU B 1207 REMARK 465 GLN B 1208 REMARK 465 MET C 697 REMARK 465 SER C 698 REMARK 465 LEU C 699 REMARK 465 GLY C 700 REMARK 465 ALA C 701 REMARK 465 GLU C 702 REMARK 465 ASN C 703 REMARK 465 LEU C 1141 REMARK 465 GLN C 1142 REMARK 465 PRO C 1143 REMARK 465 GLU C 1144 REMARK 465 LEU C 1145 REMARK 465 ASP C 1146 REMARK 465 SER C 1147 REMARK 465 PHE C 1148 REMARK 465 LYS C 1149 REMARK 465 GLU C 1150 REMARK 465 GLU C 1151 REMARK 465 LEU C 1152 REMARK 465 ASP C 1153 REMARK 465 LYS C 1154 REMARK 465 TYR C 1155 REMARK 465 PHE C 1156 REMARK 465 LYS C 1157 REMARK 465 ASN C 1158 REMARK 465 HIS C 1159 REMARK 465 THR C 1160 REMARK 465 SER C 1161 REMARK 465 PRO C 1162 REMARK 465 ASP C 1163 REMARK 465 VAL C 1164 REMARK 465 ASP C 1165 REMARK 465 LEU C 1166 REMARK 465 GLY C 1167 REMARK 465 ASP C 1168 REMARK 465 ILE C 1169 REMARK 465 SER C 1170 REMARK 465 GLY C 1171 REMARK 465 ILE C 1172 REMARK 465 ASN C 1173 REMARK 465 ALA C 1174 REMARK 465 SER C 1175 REMARK 465 VAL C 1176 REMARK 465 VAL C 1177 REMARK 465 ASN C 1178 REMARK 465 ILE C 1179 REMARK 465 GLN C 1180 REMARK 465 LYS C 1181 REMARK 465 GLU C 1182 REMARK 465 ILE C 1183 REMARK 465 ASP C 1184 REMARK 465 ARG C 1185 REMARK 465 LEU C 1186 REMARK 465 ASN C 1187 REMARK 465 GLU C 1188 REMARK 465 VAL C 1189 REMARK 465 ALA C 1190 REMARK 465 LYS C 1191 REMARK 465 ASN C 1192 REMARK 465 LEU C 1193 REMARK 465 ASN C 1194 REMARK 465 GLU C 1195 REMARK 465 SER C 1196 REMARK 465 LEU C 1197 REMARK 465 ILE C 1198 REMARK 465 ASP C 1199 REMARK 465 LEU C 1200 REMARK 465 GLN C 1201 REMARK 465 GLU C 1202 REMARK 465 LEU C 1203 REMARK 465 GLY C 1204 REMARK 465 LYS C 1205 REMARK 465 TYR C 1206 REMARK 465 GLU C 1207 REMARK 465 GLN C 1208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS C 786 OE1 GLN C 787 1.59 REMARK 500 HZ1 LYS A 786 OE1 GLN A 787 1.59 REMARK 500 HZ1 LYS B 786 OE1 GLN B 787 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 745 -17.52 82.37 REMARK 500 LYS A 795 52.15 -93.11 REMARK 500 ASP A 843 -3.87 69.75 REMARK 500 PHE A 855 47.98 -93.05 REMARK 500 PHE A 970 29.74 46.34 REMARK 500 ASP B 745 -17.52 82.40 REMARK 500 LYS B 795 52.12 -93.16 REMARK 500 ASP B 843 -3.86 69.73 REMARK 500 PHE B 855 47.97 -92.97 REMARK 500 PHE B 970 29.76 46.31 REMARK 500 ASP C 745 -17.52 82.44 REMARK 500 LYS C 795 52.14 -93.22 REMARK 500 ASP C 843 -3.85 69.78 REMARK 500 PHE C 855 47.90 -92.97 REMARK 500 PHE C 970 29.83 46.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1107 0.14 SIDE CHAIN REMARK 500 ARG B1107 0.14 SIDE CHAIN REMARK 500 ARG C1107 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43097 RELATED DB: EMDB REMARK 900 SIMULATION-DRIVEN DESIGN OF PREFUSION STABILIZED SARS-COV-2 SPIKE REMARK 900 S2 ANTIGEN DBREF 8VAO A 697 1208 UNP P0DTC2 SPIKE_SARS2 697 1208 DBREF 8VAO B 697 1208 UNP P0DTC2 SPIKE_SARS2 697 1208 DBREF 8VAO C 697 1208 UNP P0DTC2 SPIKE_SARS2 697 1208 SEQADV 8VAO CYS A 704 UNP P0DTC2 SER 704 ENGINEERED MUTATION SEQADV 8VAO CYS A 790 UNP P0DTC2 LYS 790 ENGINEERED MUTATION SEQADV 8VAO PRO A 817 UNP P0DTC2 PHE 817 ENGINEERED MUTATION SEQADV 8VAO PRO A 892 UNP P0DTC2 ALA 892 ENGINEERED MUTATION SEQADV 8VAO PRO A 899 UNP P0DTC2 ALA 899 ENGINEERED MUTATION SEQADV 8VAO PRO A 942 UNP P0DTC2 ALA 942 ENGINEERED MUTATION SEQADV 8VAO GLU A 957 UNP P0DTC2 GLN 957 ENGINEERED MUTATION SEQADV 8VAO PRO A 986 UNP P0DTC2 LYS 986 ENGINEERED MUTATION SEQADV 8VAO PRO A 987 UNP P0DTC2 VAL 987 ENGINEERED MUTATION SEQADV 8VAO TRP A 991 UNP P0DTC2 VAL 991 ENGINEERED MUTATION SEQADV 8VAO TRP A 998 UNP P0DTC2 THR 998 ENGINEERED MUTATION SEQADV 8VAO CYS B 704 UNP P0DTC2 SER 704 ENGINEERED MUTATION SEQADV 8VAO CYS B 790 UNP P0DTC2 LYS 790 ENGINEERED MUTATION SEQADV 8VAO PRO B 817 UNP P0DTC2 PHE 817 ENGINEERED MUTATION SEQADV 8VAO PRO B 892 UNP P0DTC2 ALA 892 ENGINEERED MUTATION SEQADV 8VAO PRO B 899 UNP P0DTC2 ALA 899 ENGINEERED MUTATION SEQADV 8VAO PRO B 942 UNP P0DTC2 ALA 942 ENGINEERED MUTATION SEQADV 8VAO GLU B 957 UNP P0DTC2 GLN 957 ENGINEERED MUTATION SEQADV 8VAO PRO B 986 UNP P0DTC2 LYS 986 ENGINEERED MUTATION SEQADV 8VAO PRO B 987 UNP P0DTC2 VAL 987 ENGINEERED MUTATION SEQADV 8VAO TRP B 991 UNP P0DTC2 VAL 991 ENGINEERED MUTATION SEQADV 8VAO TRP B 998 UNP P0DTC2 THR 998 ENGINEERED MUTATION SEQADV 8VAO CYS C 704 UNP P0DTC2 SER 704 ENGINEERED MUTATION SEQADV 8VAO CYS C 790 UNP P0DTC2 LYS 790 ENGINEERED MUTATION SEQADV 8VAO PRO C 817 UNP P0DTC2 PHE 817 ENGINEERED MUTATION SEQADV 8VAO PRO C 892 UNP P0DTC2 ALA 892 ENGINEERED MUTATION SEQADV 8VAO PRO C 899 UNP P0DTC2 ALA 899 ENGINEERED MUTATION SEQADV 8VAO PRO C 942 UNP P0DTC2 ALA 942 ENGINEERED MUTATION SEQADV 8VAO GLU C 957 UNP P0DTC2 GLN 957 ENGINEERED MUTATION SEQADV 8VAO PRO C 986 UNP P0DTC2 LYS 986 ENGINEERED MUTATION SEQADV 8VAO PRO C 987 UNP P0DTC2 VAL 987 ENGINEERED MUTATION SEQADV 8VAO TRP C 991 UNP P0DTC2 VAL 991 ENGINEERED MUTATION SEQADV 8VAO TRP C 998 UNP P0DTC2 THR 998 ENGINEERED MUTATION SEQRES 1 A 512 MET SER LEU GLY ALA GLU ASN CYS VAL ALA TYR SER ASN SEQRES 2 A 512 ASN SER ILE ALA ILE PRO THR ASN PHE THR ILE SER VAL SEQRES 3 A 512 THR THR GLU ILE LEU PRO VAL SER MET THR LYS THR SER SEQRES 4 A 512 VAL ASP CYS THR MET TYR ILE CYS GLY ASP SER THR GLU SEQRES 5 A 512 CYS SER ASN LEU LEU LEU GLN TYR GLY SER PHE CYS THR SEQRES 6 A 512 GLN LEU ASN ARG ALA LEU THR GLY ILE ALA VAL GLU GLN SEQRES 7 A 512 ASP LYS ASN THR GLN GLU VAL PHE ALA GLN VAL LYS GLN SEQRES 8 A 512 ILE TYR CYS THR PRO PRO ILE LYS ASP PHE GLY GLY PHE SEQRES 9 A 512 ASN PHE SER GLN ILE LEU PRO ASP PRO SER LYS PRO SER SEQRES 10 A 512 LYS ARG SER PRO ILE GLU ASP LEU LEU PHE ASN LYS VAL SEQRES 11 A 512 THR LEU ALA ASP ALA GLY PHE ILE LYS GLN TYR GLY ASP SEQRES 12 A 512 CYS LEU GLY ASP ILE ALA ALA ARG ASP LEU ILE CYS ALA SEQRES 13 A 512 GLN LYS PHE ASN GLY LEU THR VAL LEU PRO PRO LEU LEU SEQRES 14 A 512 THR ASP GLU MET ILE ALA GLN TYR THR SER ALA LEU LEU SEQRES 15 A 512 ALA GLY THR ILE THR SER GLY TRP THR PHE GLY ALA GLY SEQRES 16 A 512 PRO ALA LEU GLN ILE PRO PHE PRO MET GLN MET ALA TYR SEQRES 17 A 512 ARG PHE ASN GLY ILE GLY VAL THR GLN ASN VAL LEU TYR SEQRES 18 A 512 GLU ASN GLN LYS LEU ILE ALA ASN GLN PHE ASN SER ALA SEQRES 19 A 512 ILE GLY LYS ILE GLN ASP SER LEU SER SER THR PRO SER SEQRES 20 A 512 ALA LEU GLY LYS LEU GLN ASP VAL VAL ASN GLN ASN ALA SEQRES 21 A 512 GLU ALA LEU ASN THR LEU VAL LYS GLN LEU SER SER ASN SEQRES 22 A 512 PHE GLY ALA ILE SER SER VAL LEU ASN ASP ILE LEU SER SEQRES 23 A 512 ARG LEU ASP PRO PRO GLU ALA GLU TRP GLN ILE ASP ARG SEQRES 24 A 512 LEU ILE TRP GLY ARG LEU GLN SER LEU GLN THR TYR VAL SEQRES 25 A 512 THR GLN GLN LEU ILE ARG ALA ALA GLU ILE ARG ALA SER SEQRES 26 A 512 ALA ASN LEU ALA ALA THR LYS MET SER GLU CYS VAL LEU SEQRES 27 A 512 GLY GLN SER LYS ARG VAL ASP PHE CYS GLY LYS GLY TYR SEQRES 28 A 512 HIS LEU MET SER PHE PRO GLN SER ALA PRO HIS GLY VAL SEQRES 29 A 512 VAL PHE LEU HIS VAL THR TYR VAL PRO ALA GLN GLU LYS SEQRES 30 A 512 ASN PHE THR THR ALA PRO ALA ILE CYS HIS ASP GLY LYS SEQRES 31 A 512 ALA HIS PHE PRO ARG GLU GLY VAL PHE VAL SER ASN GLY SEQRES 32 A 512 THR HIS TRP PHE VAL THR GLN ARG ASN PHE TYR GLU PRO SEQRES 33 A 512 GLN ILE ILE THR THR ASP ASN THR PHE VAL SER GLY ASN SEQRES 34 A 512 CYS ASP VAL VAL ILE GLY ILE VAL ASN ASN THR VAL TYR SEQRES 35 A 512 ASP PRO LEU GLN PRO GLU LEU ASP SER PHE LYS GLU GLU SEQRES 36 A 512 LEU ASP LYS TYR PHE LYS ASN HIS THR SER PRO ASP VAL SEQRES 37 A 512 ASP LEU GLY ASP ILE SER GLY ILE ASN ALA SER VAL VAL SEQRES 38 A 512 ASN ILE GLN LYS GLU ILE ASP ARG LEU ASN GLU VAL ALA SEQRES 39 A 512 LYS ASN LEU ASN GLU SER LEU ILE ASP LEU GLN GLU LEU SEQRES 40 A 512 GLY LYS TYR GLU GLN SEQRES 1 B 512 MET SER LEU GLY ALA GLU ASN CYS VAL ALA TYR SER ASN SEQRES 2 B 512 ASN SER ILE ALA ILE PRO THR ASN PHE THR ILE SER VAL SEQRES 3 B 512 THR THR GLU ILE LEU PRO VAL SER MET THR LYS THR SER SEQRES 4 B 512 VAL ASP CYS THR MET TYR ILE CYS GLY ASP SER THR GLU SEQRES 5 B 512 CYS SER ASN LEU LEU LEU GLN TYR GLY SER PHE CYS THR SEQRES 6 B 512 GLN LEU ASN ARG ALA LEU THR GLY ILE ALA VAL GLU GLN SEQRES 7 B 512 ASP LYS ASN THR GLN GLU VAL PHE ALA GLN VAL LYS GLN SEQRES 8 B 512 ILE TYR CYS THR PRO PRO ILE LYS ASP PHE GLY GLY PHE SEQRES 9 B 512 ASN PHE SER GLN ILE LEU PRO ASP PRO SER LYS PRO SER SEQRES 10 B 512 LYS ARG SER PRO ILE GLU ASP LEU LEU PHE ASN LYS VAL SEQRES 11 B 512 THR LEU ALA ASP ALA GLY PHE ILE LYS GLN TYR GLY ASP SEQRES 12 B 512 CYS LEU GLY ASP ILE ALA ALA ARG ASP LEU ILE CYS ALA SEQRES 13 B 512 GLN LYS PHE ASN GLY LEU THR VAL LEU PRO PRO LEU LEU SEQRES 14 B 512 THR ASP GLU MET ILE ALA GLN TYR THR SER ALA LEU LEU SEQRES 15 B 512 ALA GLY THR ILE THR SER GLY TRP THR PHE GLY ALA GLY SEQRES 16 B 512 PRO ALA LEU GLN ILE PRO PHE PRO MET GLN MET ALA TYR SEQRES 17 B 512 ARG PHE ASN GLY ILE GLY VAL THR GLN ASN VAL LEU TYR SEQRES 18 B 512 GLU ASN GLN LYS LEU ILE ALA ASN GLN PHE ASN SER ALA SEQRES 19 B 512 ILE GLY LYS ILE GLN ASP SER LEU SER SER THR PRO SER SEQRES 20 B 512 ALA LEU GLY LYS LEU GLN ASP VAL VAL ASN GLN ASN ALA SEQRES 21 B 512 GLU ALA LEU ASN THR LEU VAL LYS GLN LEU SER SER ASN SEQRES 22 B 512 PHE GLY ALA ILE SER SER VAL LEU ASN ASP ILE LEU SER SEQRES 23 B 512 ARG LEU ASP PRO PRO GLU ALA GLU TRP GLN ILE ASP ARG SEQRES 24 B 512 LEU ILE TRP GLY ARG LEU GLN SER LEU GLN THR TYR VAL SEQRES 25 B 512 THR GLN GLN LEU ILE ARG ALA ALA GLU ILE ARG ALA SER SEQRES 26 B 512 ALA ASN LEU ALA ALA THR LYS MET SER GLU CYS VAL LEU SEQRES 27 B 512 GLY GLN SER LYS ARG VAL ASP PHE CYS GLY LYS GLY TYR SEQRES 28 B 512 HIS LEU MET SER PHE PRO GLN SER ALA PRO HIS GLY VAL SEQRES 29 B 512 VAL PHE LEU HIS VAL THR TYR VAL PRO ALA GLN GLU LYS SEQRES 30 B 512 ASN PHE THR THR ALA PRO ALA ILE CYS HIS ASP GLY LYS SEQRES 31 B 512 ALA HIS PHE PRO ARG GLU GLY VAL PHE VAL SER ASN GLY SEQRES 32 B 512 THR HIS TRP PHE VAL THR GLN ARG ASN PHE TYR GLU PRO SEQRES 33 B 512 GLN ILE ILE THR THR ASP ASN THR PHE VAL SER GLY ASN SEQRES 34 B 512 CYS ASP VAL VAL ILE GLY ILE VAL ASN ASN THR VAL TYR SEQRES 35 B 512 ASP PRO LEU GLN PRO GLU LEU ASP SER PHE LYS GLU GLU SEQRES 36 B 512 LEU ASP LYS TYR PHE LYS ASN HIS THR SER PRO ASP VAL SEQRES 37 B 512 ASP LEU GLY ASP ILE SER GLY ILE ASN ALA SER VAL VAL SEQRES 38 B 512 ASN ILE GLN LYS GLU ILE ASP ARG LEU ASN GLU VAL ALA SEQRES 39 B 512 LYS ASN LEU ASN GLU SER LEU ILE ASP LEU GLN GLU LEU SEQRES 40 B 512 GLY LYS TYR GLU GLN SEQRES 1 C 512 MET SER LEU GLY ALA GLU ASN CYS VAL ALA TYR SER ASN SEQRES 2 C 512 ASN SER ILE ALA ILE PRO THR ASN PHE THR ILE SER VAL SEQRES 3 C 512 THR THR GLU ILE LEU PRO VAL SER MET THR LYS THR SER SEQRES 4 C 512 VAL ASP CYS THR MET TYR ILE CYS GLY ASP SER THR GLU SEQRES 5 C 512 CYS SER ASN LEU LEU LEU GLN TYR GLY SER PHE CYS THR SEQRES 6 C 512 GLN LEU ASN ARG ALA LEU THR GLY ILE ALA VAL GLU GLN SEQRES 7 C 512 ASP LYS ASN THR GLN GLU VAL PHE ALA GLN VAL LYS GLN SEQRES 8 C 512 ILE TYR CYS THR PRO PRO ILE LYS ASP PHE GLY GLY PHE SEQRES 9 C 512 ASN PHE SER GLN ILE LEU PRO ASP PRO SER LYS PRO SER SEQRES 10 C 512 LYS ARG SER PRO ILE GLU ASP LEU LEU PHE ASN LYS VAL SEQRES 11 C 512 THR LEU ALA ASP ALA GLY PHE ILE LYS GLN TYR GLY ASP SEQRES 12 C 512 CYS LEU GLY ASP ILE ALA ALA ARG ASP LEU ILE CYS ALA SEQRES 13 C 512 GLN LYS PHE ASN GLY LEU THR VAL LEU PRO PRO LEU LEU SEQRES 14 C 512 THR ASP GLU MET ILE ALA GLN TYR THR SER ALA LEU LEU SEQRES 15 C 512 ALA GLY THR ILE THR SER GLY TRP THR PHE GLY ALA GLY SEQRES 16 C 512 PRO ALA LEU GLN ILE PRO PHE PRO MET GLN MET ALA TYR SEQRES 17 C 512 ARG PHE ASN GLY ILE GLY VAL THR GLN ASN VAL LEU TYR SEQRES 18 C 512 GLU ASN GLN LYS LEU ILE ALA ASN GLN PHE ASN SER ALA SEQRES 19 C 512 ILE GLY LYS ILE GLN ASP SER LEU SER SER THR PRO SER SEQRES 20 C 512 ALA LEU GLY LYS LEU GLN ASP VAL VAL ASN GLN ASN ALA SEQRES 21 C 512 GLU ALA LEU ASN THR LEU VAL LYS GLN LEU SER SER ASN SEQRES 22 C 512 PHE GLY ALA ILE SER SER VAL LEU ASN ASP ILE LEU SER SEQRES 23 C 512 ARG LEU ASP PRO PRO GLU ALA GLU TRP GLN ILE ASP ARG SEQRES 24 C 512 LEU ILE TRP GLY ARG LEU GLN SER LEU GLN THR TYR VAL SEQRES 25 C 512 THR GLN GLN LEU ILE ARG ALA ALA GLU ILE ARG ALA SER SEQRES 26 C 512 ALA ASN LEU ALA ALA THR LYS MET SER GLU CYS VAL LEU SEQRES 27 C 512 GLY GLN SER LYS ARG VAL ASP PHE CYS GLY LYS GLY TYR SEQRES 28 C 512 HIS LEU MET SER PHE PRO GLN SER ALA PRO HIS GLY VAL SEQRES 29 C 512 VAL PHE LEU HIS VAL THR TYR VAL PRO ALA GLN GLU LYS SEQRES 30 C 512 ASN PHE THR THR ALA PRO ALA ILE CYS HIS ASP GLY LYS SEQRES 31 C 512 ALA HIS PHE PRO ARG GLU GLY VAL PHE VAL SER ASN GLY SEQRES 32 C 512 THR HIS TRP PHE VAL THR GLN ARG ASN PHE TYR GLU PRO SEQRES 33 C 512 GLN ILE ILE THR THR ASP ASN THR PHE VAL SER GLY ASN SEQRES 34 C 512 CYS ASP VAL VAL ILE GLY ILE VAL ASN ASN THR VAL TYR SEQRES 35 C 512 ASP PRO LEU GLN PRO GLU LEU ASP SER PHE LYS GLU GLU SEQRES 36 C 512 LEU ASP LYS TYR PHE LYS ASN HIS THR SER PRO ASP VAL SEQRES 37 C 512 ASP LEU GLY ASP ILE SER GLY ILE ASN ALA SER VAL VAL SEQRES 38 C 512 ASN ILE GLN LYS GLU ILE ASP ARG LEU ASN GLU VAL ALA SEQRES 39 C 512 LYS ASN LEU ASN GLU SER LEU ILE ASP LEU GLN GLU LEU SEQRES 40 C 512 GLY LYS TYR GLU GLN HET NAG A1301 28 HET NAG A1302 28 HET NAG A1303 28 HET NAG B1301 28 HET NAG B1302 28 HET NAG B1303 28 HET NAG C1301 28 HET NAG C1302 28 HET NAG C1303 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 9(C8 H15 N O6) HELIX 1 AA1 ASP A 737 ILE A 742 1 6 HELIX 2 AA2 THR A 747 LEU A 754 1 8 HELIX 3 AA3 GLN A 755 GLY A 757 5 3 HELIX 4 AA4 SER A 758 ALA A 783 1 26 HELIX 5 AA5 ASN A 801 ILE A 805 5 5 HELIX 6 AA6 SER A 816 VAL A 826 1 11 HELIX 7 AA7 GLY A 832 GLY A 842 1 11 HELIX 8 AA8 ARG A 847 PHE A 855 1 9 HELIX 9 AA9 THR A 866 GLY A 885 1 20 HELIX 10 AB1 TRP A 886 ALA A 890 5 5 HELIX 11 AB2 PRO A 897 GLY A 908 1 12 HELIX 12 AB3 THR A 912 ASN A 919 1 8 HELIX 13 AB4 ASN A 919 THR A 941 1 23 HELIX 14 AB5 LEU A 945 GLN A 965 1 21 HELIX 15 AB6 LEU A 966 SER A 968 5 3 HELIX 16 AB7 VAL A 976 LEU A 984 1 9 HELIX 17 AB8 ASP A 985 VAL A 1033 1 49 HELIX 18 AB9 THR A 1116 ASP A 1118 5 3 HELIX 19 AC1 ASP B 737 ILE B 742 1 6 HELIX 20 AC2 THR B 747 LEU B 754 1 8 HELIX 21 AC3 GLN B 755 GLY B 757 5 3 HELIX 22 AC4 SER B 758 ALA B 783 1 26 HELIX 23 AC5 ASN B 801 ILE B 805 5 5 HELIX 24 AC6 SER B 816 VAL B 826 1 11 HELIX 25 AC7 GLY B 832 GLY B 842 1 11 HELIX 26 AC8 ARG B 847 PHE B 855 1 9 HELIX 27 AC9 THR B 866 GLY B 885 1 20 HELIX 28 AD1 TRP B 886 ALA B 890 5 5 HELIX 29 AD2 PRO B 897 GLY B 908 1 12 HELIX 30 AD3 THR B 912 ASN B 919 1 8 HELIX 31 AD4 ASN B 919 THR B 941 1 23 HELIX 32 AD5 LEU B 945 GLN B 965 1 21 HELIX 33 AD6 LEU B 966 SER B 968 5 3 HELIX 34 AD7 VAL B 976 LEU B 984 1 9 HELIX 35 AD8 ASP B 985 VAL B 1033 1 49 HELIX 36 AD9 THR B 1116 ASP B 1118 5 3 HELIX 37 AE1 ASP C 737 ILE C 742 1 6 HELIX 38 AE2 THR C 747 LEU C 754 1 8 HELIX 39 AE3 GLN C 755 GLY C 757 5 3 HELIX 40 AE4 SER C 758 ALA C 783 1 26 HELIX 41 AE5 ASN C 801 ILE C 805 5 5 HELIX 42 AE6 SER C 816 VAL C 826 1 11 HELIX 43 AE7 GLY C 832 GLY C 842 1 11 HELIX 44 AE8 ARG C 847 PHE C 855 1 9 HELIX 45 AE9 THR C 866 GLY C 885 1 20 HELIX 46 AF1 TRP C 886 ALA C 890 5 5 HELIX 47 AF2 PRO C 897 GLY C 908 1 12 HELIX 48 AF3 THR C 912 ASN C 919 1 8 HELIX 49 AF4 ASN C 919 THR C 941 1 23 HELIX 50 AF5 LEU C 945 GLN C 965 1 21 HELIX 51 AF6 LEU C 966 SER C 968 5 3 HELIX 52 AF7 VAL C 976 LEU C 984 1 9 HELIX 53 AF8 ASP C 985 VAL C 1033 1 49 HELIX 54 AF9 THR C 1116 ASP C 1118 5 3 SHEET 1 AA1 3 SER A 711 PRO A 728 0 SHEET 2 AA1 3 GLY A1059 THR A1076 -1 O PHE A1075 N ILE A 712 SHEET 3 AA1 3 TYR A1047 ALA A1056 -1 N MET A1050 O VAL A1065 SHEET 1 AA2 2 THR A 734 VAL A 736 0 SHEET 2 AA2 2 LEU A 858 VAL A 860 -1 O THR A 859 N SER A 735 SHEET 1 AA3 4 THR A1120 VAL A1122 0 SHEET 2 AA3 4 LYS A1086 PRO A1090 -1 N PHE A1089 O PHE A1121 SHEET 3 AA3 4 ILE A1081 HIS A1083 -1 N ILE A1081 O HIS A1088 SHEET 4 AA3 4 VAL A1133 ASN A1134 1 O VAL A1133 N CYS A1082 SHEET 1 AA4 2 VAL A1094 ASN A1098 0 SHEET 2 AA4 2 HIS A1101 THR A1105 -1 O PHE A1103 N VAL A1096 SHEET 1 AA5 3 SER B 711 PRO B 728 0 SHEET 2 AA5 3 GLY B1059 THR B1076 -1 O PHE B1075 N ILE B 712 SHEET 3 AA5 3 TYR B1047 ALA B1056 -1 N MET B1050 O VAL B1065 SHEET 1 AA6 2 THR B 734 VAL B 736 0 SHEET 2 AA6 2 LEU B 858 VAL B 860 -1 O THR B 859 N SER B 735 SHEET 1 AA7 4 THR B1120 VAL B1122 0 SHEET 2 AA7 4 LYS B1086 PRO B1090 -1 N PHE B1089 O PHE B1121 SHEET 3 AA7 4 ILE B1081 HIS B1083 -1 N ILE B1081 O HIS B1088 SHEET 4 AA7 4 VAL B1133 ASN B1134 1 O VAL B1133 N CYS B1082 SHEET 1 AA8 2 VAL B1094 ASN B1098 0 SHEET 2 AA8 2 HIS B1101 THR B1105 -1 O PHE B1103 N VAL B1096 SHEET 1 AA9 3 SER C 711 PRO C 728 0 SHEET 2 AA9 3 GLY C1059 THR C1076 -1 O PHE C1075 N ILE C 712 SHEET 3 AA9 3 TYR C1047 ALA C1056 -1 N MET C1050 O VAL C1065 SHEET 1 AB1 2 THR C 734 VAL C 736 0 SHEET 2 AB1 2 LEU C 858 VAL C 860 -1 O THR C 859 N SER C 735 SHEET 1 AB2 4 THR C1120 VAL C1122 0 SHEET 2 AB2 4 LYS C1086 PRO C1090 -1 N PHE C1089 O PHE C1121 SHEET 3 AB2 4 ILE C1081 HIS C1083 -1 N ILE C1081 O HIS C1088 SHEET 4 AB2 4 VAL C1133 ASN C1134 1 O VAL C1133 N CYS C1082 SHEET 1 AB3 2 VAL C1094 ASN C1098 0 SHEET 2 AB3 2 HIS C1101 THR C1105 -1 O PHE C1103 N VAL C1096 SSBOND 1 CYS A 704 CYS B 790 1555 1555 2.04 SSBOND 2 CYS A 738 CYS A 760 1555 1555 2.03 SSBOND 3 CYS A 743 CYS A 749 1555 1555 2.03 SSBOND 4 CYS A 790 CYS C 704 1555 1555 1.96 SSBOND 5 CYS A 840 CYS A 851 1555 1555 2.03 SSBOND 6 CYS A 1032 CYS A 1043 1555 1555 2.03 SSBOND 7 CYS A 1082 CYS A 1126 1555 1555 2.03 SSBOND 8 CYS B 704 CYS C 790 1555 1555 2.10 SSBOND 9 CYS B 738 CYS B 760 1555 1555 2.03 SSBOND 10 CYS B 743 CYS B 749 1555 1555 2.03 SSBOND 11 CYS B 840 CYS B 851 1555 1555 2.03 SSBOND 12 CYS B 1032 CYS B 1043 1555 1555 2.03 SSBOND 13 CYS B 1082 CYS B 1126 1555 1555 2.03 SSBOND 14 CYS C 738 CYS C 760 1555 1555 2.03 SSBOND 15 CYS C 743 CYS C 749 1555 1555 2.03 SSBOND 16 CYS C 840 CYS C 851 1555 1555 2.03 SSBOND 17 CYS C 1032 CYS C 1043 1555 1555 2.03 SSBOND 18 CYS C 1082 CYS C 1126 1555 1555 2.03 LINK ND2 ASN A 717 C1 NAG A1301 1555 1555 1.44 LINK ND2 ASN A 801 C1 NAG A1302 1555 1555 1.44 LINK ND2 ASN A1098 C1 NAG A1303 1555 1555 1.44 LINK ND2 ASN B 717 C1 NAG B1301 1555 1555 1.44 LINK ND2 ASN B 801 C1 NAG B1302 1555 1555 1.44 LINK ND2 ASN B1098 C1 NAG B1303 1555 1555 1.44 LINK ND2 ASN C 717 C1 NAG C1301 1555 1555 1.44 LINK ND2 ASN C 801 C1 NAG C1302 1555 1555 1.44 LINK ND2 ASN C1098 C1 NAG C1303 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000