HEADER RNA 11-DEC-23 8VAW TITLE MAGNESIUM CATALYZED PRIMER EXTENSION PRODUCT WITH 14MER PRIMER AND TITLE 2 MIXED PHOSPHOROTHIOATE ACTIVATED G MONOMER CAVEAT 8VAW COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNESIUM CATALYZED NONENZYMATIC RNA PRIMER EXTENSION COMPND 3 PRODUCT; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS PHOSPHOROTHIOATE, MAGNESIUM, OXOPHILIC METAL ION, NONENZYMATIC PRIMER KEYWDS 2 EXTENSION, RNA EXPDTA X-RAY DIFFRACTION AUTHOR Z.FANG,J.W.SZOSTAK REVDAT 2 01-MAY-24 8VAW 1 JRNL REVDAT 1 17-APR-24 8VAW 0 JRNL AUTH Z.FANG,L.T.PAZIENZA,J.ZHANG,C.P.TAM,J.W.SZOSTAK JRNL TITL CATALYTIC METAL ION-SUBSTRATE COORDINATION DURING JRNL TITL 2 NONENZYMATIC RNA PRIMER EXTENSION. JRNL REF J.AM.CHEM.SOC. V. 146 10632 2024 JRNL REFN ESSN 1520-5126 JRNL PMID 38579124 JRNL DOI 10.1021/JACS.4C00323 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 24841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.654 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 38.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 644 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00100 REMARK 3 B22 (A**2) : 0.00100 REMARK 3 B33 (A**2) : -0.00300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.688 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 774 ; 0.022 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 348 ; 0.028 ; 0.023 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1178 ; 2.926 ; 2.206 REMARK 3 BOND ANGLES OTHERS (DEGREES): 822 ; 3.468 ; 2.340 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 400 ; 0.024 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 128 ; 0.001 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 84 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 43 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 307 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.273 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 774 ; 2.935 ; 1.653 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 774 ; 2.934 ; 1.653 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1178 ; 3.753 ; 2.980 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1179 ; 3.752 ; 2.980 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8VAW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97648 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M SODIUM CHLORIDE, 50 MM TRIS PH REMARK 280 7.5, 0.25 M MAGNESIUM CHLORIDE., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 202 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 341 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 321 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 383 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 322 O HOH B 385 1.99 REMARK 500 O HOH B 385 O HOH B 388 2.03 REMARK 500 C5' DGP B 203 O HOH B 304 2.05 REMARK 500 O HOH B 327 O HOH B 385 2.11 REMARK 500 O HOH B 307 O HOH B 387 2.12 REMARK 500 O HOH A 363 O HOH B 378 2.18 REMARK 500 O HOH B 329 O HOH B 387 2.19 REMARK 500 O HOH A 320 O HOH A 366 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 11 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U A 7 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DGP A 203 REMARK 610 DGP B 203 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G46 A 15 O3' REMARK 620 2 G46 A 15 O2' 67.6 REMARK 620 3 G46 A 15 O3' 0.0 67.6 REMARK 620 4 G46 A 15 O2' 67.6 0.0 67.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 311 O REMARK 620 2 HOH A 337 O 93.0 REMARK 620 3 HOH A 345 O 92.2 88.3 REMARK 620 4 HOH B 336 O 86.7 89.1 177.1 REMARK 620 5 HOH B 342 O 87.7 177.0 88.8 93.8 REMARK 620 6 HOH B 379 O 174.3 90.8 92.1 89.2 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 343 O REMARK 620 2 HOH A 347 O 94.0 REMARK 620 3 HOH A 364 O 90.2 87.7 REMARK 620 4 HOH B 313 O 87.2 88.5 175.2 REMARK 620 5 HOH B 346 O 177.9 87.5 91.3 91.4 REMARK 620 6 HOH B 348 O 87.9 177.8 91.1 92.8 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G46 B 15 O3' REMARK 620 2 G46 B 15 O2' 68.4 REMARK 620 3 G46 B 15 O3' 0.0 68.4 REMARK 620 4 G46 B 15 O2' 68.4 0.0 68.4 REMARK 620 N 1 2 3 DBREF 8VAW A 1 15 PDB 8VAW 8VAW 1 15 DBREF 8VAW B 1 15 PDB 8VAW 8VAW 1 15 SEQRES 1 A 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 15 G G46 SEQRES 1 B 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 B 15 G G46 HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET G46 A 15 23 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET G46 B 15 23 HET MG A 201 1 HET MG A 202 1 HET DGP A 203 22 HET MG B 201 1 HET MG B 202 1 HET DGP B 203 22 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM G46 GUANOSINE-5'-MONOTHIOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DGP 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE HETSYN G46 5'-O-THIOPHOSPHONOGUANOSINE FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 1 LCG 2(C11 H14 N5 O8 P) FORMUL 1 G46 2(C10 H14 N5 O7 P S) FORMUL 3 MG 4(MG 2+) FORMUL 5 DGP 2(C10 H14 N5 O7 P) FORMUL 9 HOH *165(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.61 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.59 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.62 LINK O3' LCG A 4 P A A 5 1555 1555 1.58 LINK O3' G A 14 P G46 A 15 1555 1555 1.64 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.66 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.66 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.65 LINK O3' LCG B 4 P A B 5 1555 1555 1.58 LINK O3' G B 14 P G46 B 15 1555 1555 1.62 LINK O3' G46 A 15 MG MG A 202 1555 1555 2.30 LINK O2' G46 A 15 MG MG A 202 1555 1555 2.27 LINK O3' G46 A 15 MG MG A 202 1555 2665 2.30 LINK O2' G46 A 15 MG MG A 202 1555 2665 2.27 LINK MG MG A 201 O HOH A 311 1555 1555 2.08 LINK MG MG A 201 O HOH A 337 1555 1555 2.07 LINK MG MG A 201 O HOH A 345 1555 1555 2.08 LINK MG MG A 201 O HOH B 336 1555 1555 2.08 LINK MG MG A 201 O HOH B 342 1555 1555 2.10 LINK MG MG A 201 O HOH B 379 1555 1555 2.03 LINK O HOH A 343 MG MG B 201 1555 1555 2.10 LINK O HOH A 347 MG MG B 201 1555 1555 2.09 LINK O HOH A 364 MG MG B 201 1555 1555 2.04 LINK O3' G46 B 15 MG MG B 202 1555 1555 2.44 LINK O2' G46 B 15 MG MG B 202 1555 1555 2.37 LINK O3' G46 B 15 MG MG B 202 1555 2665 2.44 LINK O2' G46 B 15 MG MG B 202 1555 2665 2.37 LINK MG MG B 201 O HOH B 313 1555 1555 2.07 LINK MG MG B 201 O HOH B 346 1555 1555 2.10 LINK MG MG B 201 O HOH B 348 1555 1555 2.09 CRYST1 43.570 43.570 84.342 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022952 0.013251 0.000000 0.00000 SCALE2 0.000000 0.026502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011856 0.00000 HETATM 1 O5' LCC A 1 13.748 11.969 3.212 1.00 30.57 O0 HETATM 2 C5' LCC A 1 14.902 12.796 3.222 1.00 30.99 C0 HETATM 3 C4' LCC A 1 14.358 14.195 3.056 1.00 30.04 C0 HETATM 4 O4' LCC A 1 13.457 14.337 1.958 1.00 27.89 O0 HETATM 5 C1' LCC A 1 12.803 15.689 2.136 1.00 24.06 C0 HETATM 6 N1 LCC A 1 11.342 15.578 2.010 1.00 20.03 N0 HETATM 7 C6 LCC A 1 10.754 14.334 2.016 1.00 20.12 C0 HETATM 8 C5 LCC A 1 9.404 14.228 1.875 1.00 23.36 C0 HETATM 9 C5M LCC A 1 8.812 12.962 1.894 1.00 25.55 C0 HETATM 10 C4 LCC A 1 8.697 15.380 1.751 1.00 21.26 C0 HETATM 11 N4 LCC A 1 7.409 15.299 1.627 1.00 24.19 N0 HETATM 12 N3 LCC A 1 9.283 16.598 1.770 1.00 19.08 N0 HETATM 13 C2 LCC A 1 10.579 16.696 1.890 1.00 21.08 C0 HETATM 14 O2 LCC A 1 11.099 17.811 1.912 1.00 22.62 O0 HETATM 15 C3' LCC A 1 13.459 14.664 4.154 1.00 27.23 C0 HETATM 16 C2' LCC A 1 13.368 16.010 3.492 1.00 27.61 C0 HETATM 17 O2' LCC A 1 14.735 16.449 3.281 1.00 33.27 O0 HETATM 18 O3' LCC A 1 14.161 14.607 5.429 1.00 26.92 O0 HETATM 19 C6' LCC A 1 15.488 15.215 2.979 1.00 29.52 C0 HETATM 20 O5' LCC A 2 12.732 16.005 6.903 1.00 16.57 O0 HETATM 21 C5' LCC A 2 13.427 17.222 6.978 1.00 15.31 C0 HETATM 22 C4' LCC A 2 12.339 18.276 6.698 1.00 15.21 C0 HETATM 23 O4' LCC A 2 11.708 18.019 5.396 1.00 16.27 O0 HETATM 24 C1' LCC A 2 10.457 18.687 5.422 1.00 14.40 C0 HETATM 25 N1 LCC A 2 9.355 17.716 5.251 1.00 14.16 N0 HETATM 26 C6 LCC A 2 9.597 16.351 5.394 1.00 14.46 C0 HETATM 27 C5 LCC A 2 8.571 15.475 5.214 1.00 13.99 C0 HETATM 28 C5M LCC A 2 8.720 14.064 5.377 1.00 17.33 C0 HETATM 29 C4 LCC A 2 7.332 16.004 4.865 1.00 14.65 C0 HETATM 30 N4 LCC A 2 6.311 15.176 4.729 1.00 15.70 N0 HETATM 31 N3 LCC A 2 7.083 17.301 4.754 1.00 13.45 N0 HETATM 32 C2 LCC A 2 8.120 18.179 4.984 1.00 13.37 C0 HETATM 33 O2 LCC A 2 8.000 19.431 4.895 1.00 14.64 O0 HETATM 34 C3' LCC A 2 11.111 18.258 7.625 1.00 13.80 C0 HETATM 35 C2' LCC A 2 10.500 19.313 6.836 1.00 13.78 C0 HETATM 36 O2' LCC A 2 11.493 20.387 6.728 1.00 15.37 O0 HETATM 37 O3' LCC A 2 11.532 18.653 8.929 1.00 14.62 O0 HETATM 38 C6' LCC A 2 12.840 19.729 6.810 1.00 15.96 C0 HETATM 39 P LCC A 2 13.490 14.572 6.897 1.00 20.90 P0 HETATM 40 O1P LCC A 2 12.408 13.599 6.992 1.00 23.97 O0 HETATM 41 OXT LCC A 2 14.556 14.575 7.882 1.00 22.40 O0 HETATM 42 O5' LCC A 3 9.376 19.446 9.971 1.00 11.95 O0 HETATM 43 C5' LCC A 3 9.665 20.871 9.927 1.00 11.82 C0 HETATM 44 C4' LCC A 3 8.276 21.516 9.591 1.00 11.58 C0 HETATM 45 O4' LCC A 3 7.819 21.003 8.289 1.00 11.43 O0 HETATM 46 C1' LCC A 3 6.390 21.201 8.307 1.00 11.39 C0 HETATM 47 N1 LCC A 3 5.763 19.822 8.135 1.00 10.84 N0 HETATM 48 C6 LCC A 3 6.524 18.664 8.296 1.00 12.33 C0 HETATM 49 C5 LCC A 3 6.005 17.425 8.115 1.00 11.35 C0 HETATM 50 C5M LCC A 3 6.768 16.235 8.295 1.00 13.04 C0 HETATM 51 C4 LCC A 3 4.626 17.417 7.707 1.00 12.02 C0 HETATM 52 N4 LCC A 3 4.003 16.278 7.453 1.00 11.64 N0 HETATM 53 N3 LCC A 3 3.882 18.554 7.574 1.00 11.08 N0 HETATM 54 C2 LCC A 3 4.433 19.753 7.801 1.00 11.32 C0 HETATM 55 O2 LCC A 3 3.788 20.812 7.730 1.00 12.06 O0 HETATM 56 C3' LCC A 3 7.129 21.111 10.471 1.00 10.73 C0 HETATM 57 C2' LCC A 3 6.119 21.899 9.603 1.00 10.93 C0 HETATM 58 O2' LCC A 3 6.725 23.191 9.506 1.00 11.46 O0 HETATM 59 O3' LCC A 3 7.284 21.690 11.759 1.00 11.87 O0 HETATM 60 C6' LCC A 3 8.201 23.018 9.566 1.00 11.35 C0 HETATM 61 P LCC A 3 10.585 18.426 10.188 1.00 14.01 P0 HETATM 62 O1P LCC A 3 9.953 17.093 10.111 1.00 14.95 O0 HETATM 63 OXT LCC A 3 11.354 18.766 11.390 1.00 15.39 O0 HETATM 64 P LCG A 4 6.728 20.974 13.096 1.00 10.59 P0 HETATM 65 OP1 LCG A 4 7.290 21.786 14.218 1.00 11.59 O0 HETATM 66 O5' LCG A 4 5.193 21.208 12.981 1.00 10.93 O0 HETATM 67 C5' LCG A 4 4.608 22.516 12.986 1.00 10.46 C0 HETATM 68 C3' LCG A 4 2.367 21.427 13.491 1.00 10.57 C0 HETATM 69 C6' LCG A 4 2.308 23.646 12.769 1.00 11.26 C0 HETATM 70 N9 LCG A 4 1.778 19.897 11.069 1.00 11.52 N0 HETATM 71 C8 LCG A 4 2.922 19.136 11.077 1.00 11.05 C0 HETATM 72 C4 LCG A 4 0.795 19.012 10.618 1.00 10.06 C0 HETATM 73 N7 LCG A 4 2.757 17.893 10.690 1.00 11.02 N0 HETATM 74 C5 LCG A 4 1.392 17.793 10.409 1.00 11.54 C0 HETATM 75 C6 LCG A 4 0.572 16.754 9.984 1.00 10.72 C0 HETATM 76 C2' LCG A 4 1.135 21.645 12.728 1.00 11.23 C0 HETATM 77 O6 LCG A 4 0.958 15.609 9.677 1.00 12.46 O0 HETATM 78 C4' LCG A 4 3.111 22.409 12.662 1.00 11.02 C0 HETATM 79 C1' LCG A 4 1.624 21.283 11.348 1.00 11.76 C0 HETATM 80 C2 LCG A 4 -1.279 18.325 10.090 1.00 10.89 C0 HETATM 81 N1 LCG A 4 -0.734 17.100 9.867 1.00 11.04 N0 HETATM 82 O4' LCG A 4 2.999 21.820 11.351 1.00 11.14 O0 HETATM 83 OP2 LCG A 4 7.005 19.514 13.020 1.00 11.74 O0 HETATM 84 N2 LCG A 4 -2.616 18.466 9.964 1.00 11.78 N0 HETATM 85 N3 LCG A 4 -0.524 19.317 10.533 1.00 11.63 N0 HETATM 86 O2' LCG A 4 0.923 23.051 12.705 1.00 12.01 O0 HETATM 87 O3' LCG A 4 2.268 21.924 14.865 1.00 11.05 O0