HEADER VIRAL PROTEIN 14-DEC-23 8VCC TITLE CRYSTAL STRUCTURE OF H19 INFLUENZA A VIRUS HEMAGGLUTININ FROM A/LESSER TITLE 2 SCAUP/CALIFORNIA/3087/2010 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/LESSER SOURCE 3 SCAUP/CALIFORNIA/3087/2010); SOURCE 4 ORGANISM_TAXID: 1400507; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: EXPI293F KEYWDS HEMAGGLUTININ, INFLUENZA A VIRUS, H19, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,A.K.AGGARWAL REVDAT 3 30-OCT-24 8VCC 1 REMARK REVDAT 2 24-JUL-24 8VCC 1 JRNL REVDAT 1 03-JUL-24 8VCC 0 JRNL AUTH U.KARAKUS,I.MENA,J.KOTTUR,S.S.EL ZAHED,R.SEOANE,S.YILDIZ, JRNL AUTH 2 L.CHEN,M.PLANCARTE,L.LINDSAY,R.HALPIN,T.B.STOCKWELL, JRNL AUTH 3 D.E.WENTWORTH,G.J.BOONS,F.KRAMMER,S.STERTZ,W.BOYCE, JRNL AUTH 4 R.P.DE VRIES,A.K.AGGARWAL,A.GARCIA-SASTRE JRNL TITL H19 INFLUENZA A VIRUS EXHIBITS SPECIES-SPECIFIC MHC CLASS II JRNL TITL 2 RECEPTOR USAGE. JRNL REF CELL HOST MICROBE V. 32 1089 2024 JRNL REFN ESSN 1934-6069 JRNL PMID 38889725 JRNL DOI 10.1016/J.CHOM.2024.05.018 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15_3459: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 2620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9000 - 6.3548 0.99 2908 132 0.1985 0.2071 REMARK 3 2 6.3548 - 5.0458 1.00 2831 139 0.1809 0.2056 REMARK 3 3 5.0458 - 4.4084 1.00 2766 167 0.1396 0.1539 REMARK 3 4 4.4084 - 4.0056 1.00 2801 157 0.1427 0.1489 REMARK 3 5 4.0056 - 3.7186 1.00 2799 127 0.1512 0.1840 REMARK 3 6 3.7186 - 3.4994 1.00 2788 129 0.1670 0.2025 REMARK 3 7 3.4994 - 3.3242 1.00 2794 147 0.1790 0.1986 REMARK 3 8 3.3242 - 3.1796 1.00 2791 124 0.1943 0.2463 REMARK 3 9 3.1796 - 3.0572 1.00 2753 157 0.2027 0.2287 REMARK 3 10 3.0572 - 2.9517 1.00 2780 141 0.2106 0.2878 REMARK 3 11 2.9517 - 2.8594 1.00 2760 126 0.2168 0.2680 REMARK 3 12 2.8594 - 2.7777 1.00 2843 119 0.2312 0.2735 REMARK 3 13 2.7777 - 2.7046 1.00 2741 126 0.2392 0.3045 REMARK 3 14 2.7046 - 2.6386 1.00 2777 134 0.2562 0.3168 REMARK 3 15 2.6386 - 2.5786 1.00 2740 160 0.2603 0.3224 REMARK 3 16 2.5786 - 2.5237 1.00 2787 136 0.2716 0.2886 REMARK 3 17 2.5237 - 2.4733 1.00 2746 143 0.2814 0.3374 REMARK 3 18 2.4733 - 2.4266 1.00 2775 138 0.2843 0.3016 REMARK 3 19 2.4266 - 2.3832 1.00 2772 118 0.2811 0.3094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3994 REMARK 3 ANGLE : 0.959 5400 REMARK 3 CHIRALITY : 0.053 593 REMARK 3 PLANARITY : 0.005 696 REMARK 3 DIHEDRAL : 4.062 3296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 65.-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979338 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 (BUILT REMARK 200 20220110) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55617 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 101.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.0, 15% PEG 20000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 101.63100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 101.63100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 101.63100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 101.63100 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 101.63100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 101.63100 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 101.63100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 101.63100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 101.63100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 101.63100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 101.63100 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 101.63100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 101.63100 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 101.63100 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 101.63100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 101.63100 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 101.63100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 101.63100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 101.63100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 101.63100 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 101.63100 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 101.63100 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 101.63100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 101.63100 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 101.63100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 101.63100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 TRP A -12 REMARK 465 LYS A -11 REMARK 465 LEU A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 ALA A -7 REMARK 465 VAL A -6 REMARK 465 THR A -5 REMARK 465 PHE A -4 REMARK 465 LEU A -3 REMARK 465 VAL A -2 REMARK 465 ILE A -1 REMARK 465 SER A 0 REMARK 465 LYS A 1 REMARK 465 PRO A 2 REMARK 465 CYS A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 326 REMARK 465 GLY A 327 REMARK 465 LEU A 328 REMARK 465 GLU A 490 REMARK 465 SER A 491 REMARK 465 LYS A 492 REMARK 465 LEU A 493 REMARK 465 GLU A 494 REMARK 465 ARG A 495 REMARK 465 LEU A 496 REMARK 465 ARG A 497 REMARK 465 ILE A 498 REMARK 465 ASN A 499 REMARK 465 GLY A 500 REMARK 465 ILE A 501 REMARK 465 LYS A 502 REMARK 465 LEU A 503 REMARK 465 GLU A 504 REMARK 465 SER A 505 REMARK 465 ASN A 506 REMARK 465 THR A 507 REMARK 465 VAL A 508 REMARK 465 TYR A 509 REMARK 465 LYS A 510 REMARK 465 ILE A 511 REMARK 465 SER A 512 REMARK 465 GLY A 513 REMARK 465 ARG A 514 REMARK 465 LEU A 515 REMARK 465 VAL A 516 REMARK 465 PRO A 517 REMARK 465 ARG A 518 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 47 SG CYS A 273 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 115 103.69 -172.18 REMARK 500 SER A 141 -155.98 -121.56 REMARK 500 LYS A 191 -61.82 66.07 REMARK 500 LYS A 219 46.20 39.13 REMARK 500 ASN A 235 -5.72 78.31 REMARK 500 TRP A 250 -60.51 -126.71 REMARK 500 ASN A 272 79.83 -109.34 REMARK 500 ALA A 331 -164.32 53.31 REMARK 500 VAL A 344 -56.51 -120.45 REMARK 500 ASP A 458 82.96 -67.98 REMARK 500 ASN A 461 36.29 -92.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 2 REMARK 610 NAG C 2 REMARK 610 NAG A 601 REMARK 610 NAG A 602 DBREF 8VCC A -13 518 PDB 8VCC 8VCC -13 518 SEQRES 1 A 531 MET TRP LYS LEU ALA LEU ALA VAL THR PHE LEU VAL ILE SEQRES 2 A 531 SER LYS PRO CYS LYS ALA ASP LYS ILE CYS ILE GLY TYR SEQRES 3 A 531 GLN SER THR ASN SER THR ASP THR VAL ASN THR LEU ILE SEQRES 4 A 531 GLU ASN ASP VAL PRO VAL THR GLN SER LYS GLU LEU LEU SEQRES 5 A 531 HIS GLN GLU HIS ASN GLY LEU LEU CYS SER THR ASN ARG SEQRES 6 A 531 GLY SER PRO MET GLU LEU ASP LYS CYS LYS ILE GLU GLY SEQRES 7 A 531 ILE VAL PHE GLY ASN PRO GLU CYS ASP LEU LEU LEU GLY SEQRES 8 A 531 GLY ARG ASP TRP SER TYR ILE ILE GLU ARG ASP THR ALA SEQRES 9 A 531 LYS GLU GLY ILE CYS TYR PRO GLY SER ILE GLU ASN ILE SEQRES 10 A 531 GLU GLU LEU ARG VAL LEU PHE SER SER SER SER SER TYR SEQRES 11 A 531 LYS ARG ILE VAL MET PHE PRO ASP PHE ALA TRP ASN VAL SEQRES 12 A 531 THR TYR THR THR THR SER PRO ALA CYS SER ASN SER PHE SEQRES 13 A 531 TYR ARG ASN MET ARG TRP LEU THR LYS LYS SER ASP ASN SEQRES 14 A 531 PHE PRO THR GLN GLU ALA GLN PHE LYS ASN ARG GLU SER SEQRES 15 A 531 ASP PRO ILE LEU PHE MET TRP ALA ILE HIS TYR PRO SER SEQRES 16 A 531 SER GLN SER GLU GLN GLU TYR LEU TYR LYS ASN LEU ASP SEQRES 17 A 531 THR THR SER SER VAL SER THR GLU ASP LEU HIS ARG ASN SEQRES 18 A 531 PHE LYS SER ALA PHE GLY SER ASN VAL ALA ILE LYS GLY SEQRES 19 A 531 ILE GLN GLY ARG MET THR TYR SER TRP GLY ILE LEU LYS SEQRES 20 A 531 PRO ASN GLN THR LEU LYS ILE ARG THR ASN GLY ASN MET SEQRES 21 A 531 ILE VAL PRO TRP TYR GLY HIS ILE LEU ARG GLY GLU SER SEQRES 22 A 531 HIS GLY ARG ILE LEU ARG SER ASP THR PRO LEU GLY ASN SEQRES 23 A 531 CYS LEU VAL GLU CYS GLN THR GLU ARG GLY GLY PHE ASN SEQRES 24 A 531 ALA SER LEU PRO PHE GLN ASN ILE SER LYS TYR ALA PHE SEQRES 25 A 531 GLY ASN CYS PRO LYS TYR VAL LYS THR ASN SER LEU LYS SEQRES 26 A 531 LEU ALA LEU GLY MET ARG ASN VAL PRO ILE LYS GLU THR SEQRES 27 A 531 ARG GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY SEQRES 28 A 531 GLY TRP PRO GLY LEU VAL ALA GLY TRP TYR GLY PHE GLN SEQRES 29 A 531 HIS TYR ASN SER GLU GLY THR GLY MET ALA ALA ASP LEU SEQRES 30 A 531 THR SER THR GLN LYS ALA ILE ASP LYS ILE THR SER LYS SEQRES 31 A 531 VAL ASN ASN ILE ILE ASP LYS MET ASN LYS GLN TYR GLU SEQRES 32 A 531 ILE ILE GLY HIS GLU PHE SER GLU ILE GLU THR ARG ILE SEQRES 33 A 531 ASN MET ILE ASN ASP LYS ILE ASP ASP GLN ILE GLN ASP SEQRES 34 A 531 ILE TRP ALA TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU SEQRES 35 A 531 ASN GLN LYS THR LEU ASP GLU HIS ASP SER ASN VAL ARG SEQRES 36 A 531 ASN LEU TYR GLU ARG VAL LYS ARG SER LEU GLY GLU ASN SEQRES 37 A 531 ALA ILE ASP GLU GLY ASN GLY CYS PHE GLU LEU LEU HIS SEQRES 38 A 531 LYS CYS ASP ASN THR CYS MET ASP THR ILE LYS ASN GLY SEQRES 39 A 531 THR TYR SER LYS TYR GLN TYR SER GLU SER LYS LEU GLU SEQRES 40 A 531 ARG LEU ARG ILE ASN GLY ILE LYS LEU GLU SER ASN THR SEQRES 41 A 531 VAL TYR LYS ILE SER GLY ARG LEU VAL PRO ARG HET NAG B 1 14 HET NAG B 2 13 HET NAG C 1 14 HET NAG C 2 13 HET NAG A 601 14 HET NAG A 602 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 6 HOH *231(H2 O) HELIX 1 AA1 LYS A 61 GLY A 68 1 8 HELIX 2 AA2 ASN A 102 SER A 111 1 10 HELIX 3 AA3 PRO A 123 TRP A 127 5 5 HELIX 4 AA4 SER A 135 SER A 139 5 5 HELIX 5 AA5 SER A 182 LYS A 191 1 10 HELIX 6 AA6 GLY A 334 GLY A 338 5 5 HELIX 7 AA7 ASP A 363 LYS A 384 1 22 HELIX 8 AA8 GLU A 400 GLY A 453 1 54 HELIX 9 AA9 ASP A 471 ASN A 480 1 10 SHEET 1 AA1 5 GLY A 357 ALA A 362 0 SHEET 2 AA1 5 TYR A 348 ASN A 354 -1 N PHE A 350 O ALA A 361 SHEET 3 AA1 5 LYS A 7 TYR A 12 -1 N CYS A 9 O GLN A 351 SHEET 4 AA1 5 CYS A 463 LEU A 466 -1 O PHE A 464 N ILE A 8 SHEET 5 AA1 5 ALA A 456 ASP A 458 -1 N ILE A 457 O GLU A 465 SHEET 1 AA2 2 THR A 20 VAL A 21 0 SHEET 2 AA2 2 VAL A 29 PRO A 30 -1 O VAL A 29 N VAL A 21 SHEET 1 AA3 2 SER A 34 GLU A 36 0 SHEET 2 AA3 2 LYS A 311 ALA A 313 -1 O LEU A 312 N LYS A 35 SHEET 1 AA4 3 LEU A 38 HIS A 39 0 SHEET 2 AA4 3 PHE A 290 GLN A 291 1 O PHE A 290 N HIS A 39 SHEET 3 AA4 3 LYS A 303 TYR A 304 1 O LYS A 303 N GLN A 291 SHEET 1 AA5 2 LEU A 46 SER A 48 0 SHEET 2 AA5 2 LEU A 270 LEU A 274 1 O CYS A 273 N SER A 48 SHEET 1 AA6 3 PRO A 54 LEU A 57 0 SHEET 2 AA6 3 TYR A 83 GLU A 86 1 O ILE A 85 N MET A 55 SHEET 3 AA6 3 ILE A 263 ARG A 265 1 O LEU A 264 N GLU A 86 SHEET 1 AA7 5 GLY A 98 ILE A 100 0 SHEET 2 AA7 5 ARG A 224 LEU A 232 1 O TYR A 227 N SER A 99 SHEET 3 AA7 5 ILE A 171 TYR A 179 -1 N TYR A 179 O ARG A 224 SHEET 4 AA7 5 TYR A 251 ILE A 254 -1 O HIS A 253 N LEU A 172 SHEET 5 AA7 5 LYS A 117 VAL A 120 -1 N LYS A 117 O ILE A 254 SHEET 1 AA8 5 GLY A 98 ILE A 100 0 SHEET 2 AA8 5 ARG A 224 LEU A 232 1 O TYR A 227 N SER A 99 SHEET 3 AA8 5 ILE A 171 TYR A 179 -1 N TYR A 179 O ARG A 224 SHEET 4 AA8 5 MET A 246 PRO A 249 -1 O ILE A 247 N ALA A 176 SHEET 5 AA8 5 MET A 146 TRP A 148 -1 N ARG A 147 O VAL A 248 SHEET 1 AA9 4 GLN A 159 LYS A 164 0 SHEET 2 AA9 4 THR A 237 THR A 242 -1 O LEU A 238 N PHE A 163 SHEET 3 AA9 4 THR A 196 SER A 200 -1 N SER A 198 O ARG A 241 SHEET 4 AA9 4 HIS A 205 LYS A 209 -1 O PHE A 208 N SER A 197 SHEET 1 AB1 3 GLY A 282 PHE A 284 0 SHEET 2 AB1 3 CYS A 277 THR A 279 -1 N CYS A 277 O PHE A 284 SHEET 3 AB1 3 PHE A 298 GLY A 299 -1 O PHE A 298 N GLN A 278 SSBOND 1 CYS A 9 CYS A 463 1555 1555 2.06 SSBOND 2 CYS A 60 CYS A 72 1555 1555 2.04 SSBOND 3 CYS A 95 CYS A 138 1555 1555 2.11 SSBOND 4 CYS A 277 CYS A 301 1555 1555 2.07 SSBOND 5 CYS A 470 CYS A 474 1555 1555 2.07 LINK ND2 ASN A 285 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 292 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 CRYST1 203.262 203.262 203.262 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004920 0.00000