HEADER IMMUNE SYSTEM 14-DEC-23 8VDD TITLE CRYSTAL STRUCTURE OF PROINSULIN C-PEPTIDE BOUND TO HLA-DQ8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS II HLA-DQ-ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DQA1*03:01 (DQ8-ALPHA CHAIN); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MHC CLASS II HLA-DQ-BETA-1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: DQB1*03:02 (DQ8-BETA CHAIN); COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PROINSULIN C-PEPTIDE (INSC8-22); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DQA1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH10B; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE (BTI-TN-5B1-4); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC-DUAL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HLA-DQB1; SOURCE 16 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: DH10B; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE (BTI-TN-5B1-4); SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC-DUAL; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PZIP3; SOURCE 22 MOL_ID: 3; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: INS; SOURCE 27 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 29 EXPRESSION_SYSTEM_STRAIN: DH10B; SOURCE 30 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE (BTI-TN-5B1-4); SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC-DUAL; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PZIP3 KEYWDS PMHC II COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.M.TRAN,J.J.LIM,T.Y.LOH,I.S.MANNERING,J.ROSSJOHN,H.H.REID REVDAT 4 23-OCT-24 8VDD 1 REMARK REVDAT 3 04-SEP-24 8VDD 1 JRNL REVDAT 2 14-AUG-24 8VDD 1 JRNL REVDAT 1 07-AUG-24 8VDD 0 JRNL AUTH M.T.TRAN,J.J.LIM,T.J.LOH,S.I.MANNERING,J.ROSSJOHN,H.H.REID JRNL TITL A STRUCTURAL BASIS OF T CELL CROSS-REACTIVITY TO NATIVE AND JRNL TITL 2 SPLICED SELF-ANTIGENS PRESENTED BY HLA-DQ8. JRNL REF J.BIOL.CHEM. V. 300 07612 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39074636 JRNL DOI 10.1016/J.JBC.2024.107612 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6400 - 4.7200 1.00 2908 143 0.2194 0.2781 REMARK 3 2 4.7200 - 3.7500 1.00 2778 149 0.1940 0.2387 REMARK 3 3 3.7500 - 3.2800 1.00 2798 132 0.2122 0.2666 REMARK 3 4 3.2800 - 2.9800 1.00 2754 138 0.2357 0.3140 REMARK 3 5 2.9800 - 2.7600 1.00 2773 130 0.2579 0.2893 REMARK 3 6 2.7600 - 2.6000 0.99 2692 167 0.2633 0.3632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.402 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3077 REMARK 3 ANGLE : 0.565 4200 REMARK 3 CHIRALITY : 0.045 465 REMARK 3 PLANARITY : 0.006 545 REMARK 3 DIHEDRAL : 12.928 1094 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9284 -13.0766 25.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.6345 T22: 0.0337 REMARK 3 T33: 0.3413 T12: -0.0395 REMARK 3 T13: 0.0636 T23: -0.0956 REMARK 3 L TENSOR REMARK 3 L11: 3.8589 L22: 0.6151 REMARK 3 L33: 1.3104 L12: 1.1885 REMARK 3 L13: -1.0507 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.0086 S13: 0.6770 REMARK 3 S21: -0.3807 S22: -0.0172 S23: 0.2509 REMARK 3 S31: -0.4918 S32: 0.1077 S33: -0.2762 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0221 -22.6752 25.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.3624 T22: 0.1292 REMARK 3 T33: 0.2721 T12: 0.0189 REMARK 3 T13: 0.0121 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 2.9066 L22: 0.9615 REMARK 3 L33: 3.8940 L12: -1.2854 REMARK 3 L13: -1.3187 L23: -0.5594 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: 0.1778 S13: -0.2794 REMARK 3 S21: -0.2100 S22: -0.0198 S23: 0.2611 REMARK 3 S31: 0.0925 S32: -0.6567 S33: 0.3097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5462 -27.6954 19.5026 REMARK 3 T TENSOR REMARK 3 T11: 0.4101 T22: 0.1400 REMARK 3 T33: 0.3319 T12: 0.0113 REMARK 3 T13: 0.1026 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.2619 L22: 4.8434 REMARK 3 L33: 4.7691 L12: -0.9020 REMARK 3 L13: -0.8084 L23: -0.2947 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: 0.1324 S13: -0.3496 REMARK 3 S21: -0.2160 S22: -0.2054 S23: -0.2994 REMARK 3 S31: 0.5177 S32: -0.0833 S33: 0.3391 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6885 -23.3458 37.1848 REMARK 3 T TENSOR REMARK 3 T11: 0.4274 T22: 0.2694 REMARK 3 T33: 0.1696 T12: -0.0501 REMARK 3 T13: 0.0703 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.4818 L22: 4.2651 REMARK 3 L33: 5.2456 L12: -1.1954 REMARK 3 L13: -0.3884 L23: 1.2358 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.4452 S13: -0.0856 REMARK 3 S21: 0.3677 S22: 0.2677 S23: 0.0439 REMARK 3 S31: 0.4795 S32: -0.6513 S33: -0.0606 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6691 -12.3606 28.8444 REMARK 3 T TENSOR REMARK 3 T11: 0.3052 T22: 1.0752 REMARK 3 T33: 0.3795 T12: 0.1062 REMARK 3 T13: 0.0816 T23: 0.1231 REMARK 3 L TENSOR REMARK 3 L11: 1.9929 L22: 1.6933 REMARK 3 L33: 2.9843 L12: 0.3040 REMARK 3 L13: -1.6267 L23: -0.4599 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: 0.2075 S13: 0.3024 REMARK 3 S21: 0.0833 S22: 0.3382 S23: 0.2198 REMARK 3 S31: -0.2951 S32: -1.4069 S33: -0.2492 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8351 -16.2605 -1.7981 REMARK 3 T TENSOR REMARK 3 T11: 0.4279 T22: 1.4081 REMARK 3 T33: 0.4065 T12: -0.1103 REMARK 3 T13: -0.0262 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 2.6400 L22: 1.9689 REMARK 3 L33: 3.3043 L12: 1.0569 REMARK 3 L13: 0.3560 L23: -2.1020 REMARK 3 S TENSOR REMARK 3 S11: 0.1439 S12: 0.1271 S13: 0.1320 REMARK 3 S21: -0.3150 S22: 0.3246 S23: -0.1063 REMARK 3 S31: -0.0852 S32: -0.0988 S33: -0.5131 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3911 -19.1085 10.5683 REMARK 3 T TENSOR REMARK 3 T11: 0.3147 T22: 1.1772 REMARK 3 T33: 0.3094 T12: 0.0460 REMARK 3 T13: -0.0704 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.1774 L22: 0.5241 REMARK 3 L33: 4.0978 L12: -0.2219 REMARK 3 L13: -0.7239 L23: 0.3528 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.2606 S13: -0.1171 REMARK 3 S21: -0.0466 S22: 0.1581 S23: 0.0966 REMARK 3 S31: 0.1332 S32: -0.3610 S33: -0.1555 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0317 -28.3942 3.5048 REMARK 3 T TENSOR REMARK 3 T11: 0.4468 T22: 0.9165 REMARK 3 T33: 0.3798 T12: -0.0617 REMARK 3 T13: 0.0799 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 9.6052 L22: 9.0833 REMARK 3 L33: 3.9904 L12: 2.6525 REMARK 3 L13: 5.0981 L23: 4.6827 REMARK 3 S TENSOR REMARK 3 S11: 0.3002 S12: 0.9839 S13: 0.1661 REMARK 3 S21: -0.0046 S22: -0.7194 S23: 0.7551 REMARK 3 S31: 1.0661 S32: -0.8977 S33: 0.5119 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5020 -14.3524 20.3307 REMARK 3 T TENSOR REMARK 3 T11: 0.4159 T22: 0.3629 REMARK 3 T33: 0.3496 T12: -0.0587 REMARK 3 T13: 0.0030 T23: 0.1227 REMARK 3 L TENSOR REMARK 3 L11: 3.2612 L22: 8.0848 REMARK 3 L33: 2.3656 L12: -1.2842 REMARK 3 L13: -0.0182 L23: 4.2399 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.6159 S13: 0.4885 REMARK 3 S21: 0.7772 S22: -0.3354 S23: -0.0708 REMARK 3 S31: 0.4143 S32: -0.2107 S33: 0.3788 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0591 -22.4607 0.9453 REMARK 3 T TENSOR REMARK 3 T11: 0.6103 T22: 1.5102 REMARK 3 T33: 0.3602 T12: -0.0971 REMARK 3 T13: -0.1195 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 0.1201 L22: 2.1341 REMARK 3 L33: 0.0486 L12: -0.0372 REMARK 3 L13: 0.0694 L23: -0.1608 REMARK 3 S TENSOR REMARK 3 S11: 0.1888 S12: 0.1630 S13: -0.0307 REMARK 3 S21: -0.6859 S22: -0.3394 S23: 0.4548 REMARK 3 S31: 0.0834 S32: -1.1944 S33: -0.0740 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8133 -15.9456 7.1281 REMARK 3 T TENSOR REMARK 3 T11: 0.4847 T22: 1.9974 REMARK 3 T33: 0.5932 T12: 0.0456 REMARK 3 T13: 0.0469 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 0.1190 L22: 0.7716 REMARK 3 L33: 3.4936 L12: 0.0310 REMARK 3 L13: 0.0896 L23: 0.8960 REMARK 3 S TENSOR REMARK 3 S11: 0.2358 S12: 0.3089 S13: 0.3339 REMARK 3 S21: -0.1178 S22: -0.2427 S23: 0.1855 REMARK 3 S31: -0.3247 S32: -0.4588 S33: -0.0854 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2761 -12.7322 32.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.3797 T22: 0.0317 REMARK 3 T33: 0.2532 T12: 0.0278 REMARK 3 T13: 0.0257 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.9510 L22: 0.6527 REMARK 3 L33: 3.5151 L12: -0.3842 REMARK 3 L13: -0.7713 L23: 0.8492 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -0.0659 S13: 0.2050 REMARK 3 S21: 0.0937 S22: 0.0885 S23: -0.0602 REMARK 3 S31: -0.1766 S32: 0.1898 S33: -0.0405 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6019 -4.0346 -4.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.3305 T22: 0.3452 REMARK 3 T33: 0.2585 T12: 0.0077 REMARK 3 T13: 0.0033 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 3.1627 L22: 6.0648 REMARK 3 L33: 7.2341 L12: 0.5627 REMARK 3 L13: -1.0608 L23: -2.5189 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.5159 S13: 0.3863 REMARK 3 S21: -0.3335 S22: 0.1130 S23: 0.4947 REMARK 3 S31: -0.3183 S32: -0.5204 S33: -0.1038 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID -2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7825 -22.0778 35.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.5313 T22: 0.1380 REMARK 3 T33: 0.2129 T12: 0.0265 REMARK 3 T13: 0.0177 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 9.6163 L22: 5.5550 REMARK 3 L33: 8.0337 L12: -0.6972 REMARK 3 L13: -6.1124 L23: 0.5978 REMARK 3 S TENSOR REMARK 3 S11: -0.4497 S12: 0.4396 S13: -0.3699 REMARK 3 S21: 0.4598 S22: 0.1019 S23: -0.1171 REMARK 3 S31: 0.4759 S32: -0.2501 S33: 0.4406 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95374 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K NA TARTRATE, 14% W/V PEG REMARK 280 20,000 WITH SEEDING AND ADDITIVE C8 SILVER BULLET, PH 8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.41650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.34900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.41650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.34900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -1 REMARK 465 SER A 183 REMARK 465 ARG B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 SER B 104 REMARK 465 ARG B 105 REMARK 465 THR B 106 REMARK 465 GLU B 107 REMARK 465 ALA B 108 REMARK 465 LEU B 109 REMARK 465 ASN B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 ASN B 113 REMARK 465 GLN B 191 REMARK 465 SER B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 98 CG1 CG2 REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 SER A 124 OG REMARK 470 ASN A 125 CG OD1 ND2 REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 128 OG REMARK 470 VAL A 129 CG1 CG2 REMARK 470 THR A 130 OG1 CG2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 VAL A 166 CG1 CG2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LEU B 114 CG CD1 CD2 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 MET B 163 CG SD CE REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 GLN C 12 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 19 95.91 -3.27 REMARK 500 SER A 124 -83.88 -74.45 REMARK 500 ASP A 159 50.45 -100.13 REMARK 500 ASN B 33 -109.45 55.08 REMARK 500 PRO B 52 0.13 -61.69 REMARK 500 VAL B 78 -64.14 -108.77 REMARK 500 THR B 89 -72.32 -137.00 REMARK 500 PRO B 124 -159.07 -76.01 REMARK 500 ASN B 134 -112.79 54.40 REMARK 500 THR B 140 -86.79 -108.37 REMARK 500 GLU B 162 34.29 -89.01 REMARK 500 THR B 164 58.70 -144.16 REMARK 500 SER C 10 72.84 -116.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 226 DISTANCE = 5.94 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8VCX RELATED DB: PDB REMARK 900 THE 8VCX CONTAINS THE SAMPLE ANTIGEN AND MHC REMARK 900 RELATED ID: 8VCY RELATED DB: PDB REMARK 900 RELATED ID: 8VD0 RELATED DB: PDB REMARK 900 RELATED ID: 8VD2 RELATED DB: PDB DBREF 8VDD A -1 182 UNP Q30069 Q30069_HUMAN 1 184 DBREF 8VDD B 1 192 UNP O19707 O19707_HUMAN 1 192 DBREF 8VDD C -2 12 UNP P01308 INS_HUMAN 64 78 SEQADV 8VDD CYS A 73 UNP Q30069 ILE 75 ENGINEERED MUTATION SEQADV 8VDD SER A 183 UNP Q30069 EXPRESSION TAG SEQADV 8VDD GLU C 9 UNP P01308 GLY 75 ENGINEERED MUTATION SEQADV 8VDD CYS C 11 UNP P01308 LEU 77 ENGINEERED MUTATION SEQRES 1 A 185 GLU ASP ILE VAL ALA ASP HIS VAL ALA SER TYR GLY VAL SEQRES 2 A 185 ASN LEU TYR GLN SER TYR GLY PRO SER GLY GLN TYR SER SEQRES 3 A 185 HIS GLU PHE ASP GLY ASP GLU GLU PHE TYR VAL ASP LEU SEQRES 4 A 185 GLU ARG LYS GLU THR VAL TRP GLN LEU PRO LEU PHE ARG SEQRES 5 A 185 ARG PHE ARG ARG PHE ASP PRO GLN PHE ALA LEU THR ASN SEQRES 6 A 185 ILE ALA VAL LEU LYS HIS ASN LEU ASN CYS VAL ILE LYS SEQRES 7 A 185 ARG SER ASN SER THR ALA ALA THR ASN GLU VAL PRO GLU SEQRES 8 A 185 VAL THR VAL PHE SER LYS SER PRO VAL THR LEU GLY GLN SEQRES 9 A 185 PRO ASN THR LEU ILE CYS LEU VAL ASP ASN ILE PHE PRO SEQRES 10 A 185 PRO VAL VAL ASN ILE THR TRP LEU SER ASN GLY HIS SER SEQRES 11 A 185 VAL THR GLU GLY VAL SER GLU THR SER PHE LEU SER LYS SEQRES 12 A 185 SER ASP HIS SER PHE PHE LYS ILE SER TYR LEU THR PHE SEQRES 13 A 185 LEU PRO SER ALA ASP GLU ILE TYR ASP CYS LYS VAL GLU SEQRES 14 A 185 HIS TRP GLY LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU SEQRES 15 A 185 PRO GLU SER SEQRES 1 B 192 ARG ASP SER PRO GLU ASP PHE VAL TYR GLN PHE LYS GLY SEQRES 2 B 192 MET CYS TYR PHE THR ASN GLY THR GLU ARG VAL ARG LEU SEQRES 3 B 192 VAL THR ARG TYR ILE TYR ASN ARG GLU GLU TYR ALA ARG SEQRES 4 B 192 PHE ASP SER ASP VAL GLY VAL TYR ARG ALA VAL THR PRO SEQRES 5 B 192 LEU GLY PRO PRO ALA ALA GLU TYR TRP ASN SER GLN LYS SEQRES 6 B 192 GLU VAL LEU GLU ARG THR ARG ALA GLU LEU ASP THR VAL SEQRES 7 B 192 CYS ARG HIS ASN TYR GLN LEU GLU LEU ARG THR THR LEU SEQRES 8 B 192 GLN ARG ARG VAL GLU PRO THR VAL THR ILE SER PRO SER SEQRES 9 B 192 ARG THR GLU ALA LEU ASN HIS HIS ASN LEU LEU VAL CYS SEQRES 10 B 192 SER VAL THR ASP PHE TYR PRO ALA GLN ILE LYS VAL ARG SEQRES 11 B 192 TRP PHE ARG ASN ASP GLN GLU GLU THR THR GLY VAL VAL SEQRES 12 B 192 SER THR PRO LEU ILE ARG ASN GLY ASP TRP THR PHE GLN SEQRES 13 B 192 ILE LEU VAL MET LEU GLU MET THR PRO GLN ARG GLY ASP SEQRES 14 B 192 VAL TYR THR CYS HIS VAL GLU HIS PRO SER LEU GLN ASN SEQRES 15 B 192 PRO ILE ILE VAL GLU TRP ARG ALA GLN SER SEQRES 1 C 15 GLY GLN VAL GLU LEU GLY GLY GLY PRO GLY ALA GLU SER SEQRES 2 C 15 CYS GLN HET NAG A 201 14 HET GOL C 201 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG C8 H15 N O6 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *52(H2 O) HELIX 1 AA1 LEU A 46 ARG A 53 1 8 HELIX 2 AA2 ASP A 56 SER A 78 1 23 HELIX 3 AA3 GLY B 54 GLN B 64 1 11 HELIX 4 AA4 GLN B 64 ALA B 73 1 10 HELIX 5 AA5 ALA B 73 VAL B 78 1 6 HELIX 6 AA6 VAL B 78 ARG B 88 1 11 HELIX 7 AA7 THR B 89 ARG B 93 5 5 SHEET 1 AA1 8 GLU A 41 TRP A 44 0 SHEET 2 AA1 8 ASP A 30 ASP A 36 -1 N TYR A 34 O VAL A 43 SHEET 3 AA1 8 SER A 20 PHE A 27 -1 N HIS A 25 O GLU A 32 SHEET 4 AA1 8 HIS A 5 GLN A 15 -1 N SER A 8 O GLU A 26 SHEET 5 AA1 8 VAL B 8 THR B 18 -1 O PHE B 11 N ASN A 12 SHEET 6 AA1 8 ARG B 23 TYR B 32 -1 O ARG B 25 N TYR B 16 SHEET 7 AA1 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 AA1 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 AA2 4 GLU A 89 SER A 94 0 SHEET 2 AA2 4 ASN A 104 ILE A 113 -1 O ASP A 111 N GLU A 89 SHEET 3 AA2 4 PHE A 146 PHE A 154 -1 O PHE A 146 N ILE A 113 SHEET 4 AA2 4 VAL A 133 GLU A 135 -1 N SER A 134 O TYR A 151 SHEET 1 AA3 4 GLU A 89 SER A 94 0 SHEET 2 AA3 4 ASN A 104 ILE A 113 -1 O ASP A 111 N GLU A 89 SHEET 3 AA3 4 PHE A 146 PHE A 154 -1 O PHE A 146 N ILE A 113 SHEET 4 AA3 4 LEU A 139 SER A 140 -1 N LEU A 139 O PHE A 147 SHEET 1 AA4 4 SER A 128 VAL A 129 0 SHEET 2 AA4 4 ASN A 119 LEU A 123 -1 N TRP A 122 O VAL A 129 SHEET 3 AA4 4 TYR A 162 GLU A 167 -1 O LYS A 165 N THR A 121 SHEET 4 AA4 4 LEU A 175 TRP A 179 -1 O LYS A 177 N CYS A 164 SHEET 1 AA5 4 THR B 98 SER B 102 0 SHEET 2 AA5 4 LEU B 115 PHE B 122 -1 O THR B 120 N THR B 98 SHEET 3 AA5 4 PHE B 155 LEU B 161 -1 O PHE B 155 N PHE B 122 SHEET 4 AA5 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 AA6 4 THR B 98 SER B 102 0 SHEET 2 AA6 4 LEU B 115 PHE B 122 -1 O THR B 120 N THR B 98 SHEET 3 AA6 4 PHE B 155 LEU B 161 -1 O PHE B 155 N PHE B 122 SHEET 4 AA6 4 ILE B 148 ARG B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 AA7 4 GLN B 136 GLU B 138 0 SHEET 2 AA7 4 LYS B 128 ARG B 133 -1 N TRP B 131 O GLU B 138 SHEET 3 AA7 4 TYR B 171 GLU B 176 -1 O HIS B 174 N ARG B 130 SHEET 4 AA7 4 ILE B 184 TRP B 188 -1 O VAL B 186 N CYS B 173 SSBOND 1 CYS A 73 CYS C 11 1555 1555 2.03 SSBOND 2 CYS A 108 CYS A 164 1555 1555 2.04 SSBOND 3 CYS B 15 CYS B 79 1555 1555 2.03 SSBOND 4 CYS B 117 CYS B 173 1555 1555 2.04 LINK ND2 ASN A 119 C1 NAG A 201 1555 1555 1.44 CISPEP 1 PHE A 114 PRO A 115 0 2.00 CISPEP 2 TYR B 123 PRO B 124 0 4.77 CRYST1 158.833 40.698 92.604 90.00 109.52 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006296 0.000000 0.002232 0.00000 SCALE2 0.000000 0.024571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011457 0.00000