data_8VE1 # _entry.id 8VE1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VE1 pdb_00008ve1 10.2210/pdb8ve1/pdb WWPDB D_1000279377 ? ? EMDB EMD-43161 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-06-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VE1 _pdbx_database_status.recvd_initial_deposition_date 2023-12-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Human transthyretin covalently modified with A2-derived stilbene in the canonical conformation' _pdbx_database_related.db_id EMD-43161 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email glander@scripps.edu _pdbx_contact_author.name_first Gabriel _pdbx_contact_author.name_last Lander _pdbx_contact_author.name_mi C _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4921-1135 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Basanta, B.' 1 0000-0003-1118-5269 'Nugroho, K.' 2 0000-0003-1361-993X 'Yan, N.' 3 0000-0003-4978-550X 'Kline, G.M.' 4 0000-0002-6960-1299 'Tsai, F.J.' 5 0000-0002-3425-8697 'Wu, M.' 6 0000-0002-2248-9383 'Kelly, J.W.' 7 ? 'Lander, G.C.' 8 0000-0003-4921-1135 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The conformational landscape of human transthyretin revealed by cryo-EM' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Basanta, B.' 1 0000-0003-1118-5269 primary 'Nugroho, K.' 2 0000-0003-1361-993X primary 'Yan, N.' 3 0000-0003-4978-550X primary 'Kline, G.M.' 4 0000-0002-6960-1299 primary 'Powers, E.T.' 5 0000-0001-8185-8487 primary 'Tsai, F.J.' 6 0000-0002-3425-8697 primary 'Wu, M.' 7 0000-0002-2248-9383 primary 'Hansel-Harris, A.' 8 0000-0001-7064-1119 primary 'Chen, J.' 9 ? primary 'Forli, S.' 10 0000-0002-5964-7111 primary 'Kelly, J.W.' 11 ? primary 'Lander, G.C.' 12 0000-0003-4921-1135 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transthyretin 13908.557 4 ? ? ? ? 2 non-polymer man '3-(dimethylamino)-5-[(E)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzoic acid' 311.375 2 ? ? ? ? 3 water nat water 18.015 27 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ATTR,Prealbumin,TBPA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYW KALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;MGPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYW KALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-(dimethylamino)-5-[(E)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzoic acid' 1WZ 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 PRO n 1 4 THR n 1 5 GLY n 1 6 THR n 1 7 GLY n 1 8 GLU n 1 9 SER n 1 10 LYS n 1 11 CYS n 1 12 PRO n 1 13 LEU n 1 14 MET n 1 15 VAL n 1 16 LYS n 1 17 VAL n 1 18 LEU n 1 19 ASP n 1 20 ALA n 1 21 VAL n 1 22 ARG n 1 23 GLY n 1 24 SER n 1 25 PRO n 1 26 ALA n 1 27 ILE n 1 28 ASN n 1 29 VAL n 1 30 ALA n 1 31 VAL n 1 32 HIS n 1 33 VAL n 1 34 PHE n 1 35 ARG n 1 36 LYS n 1 37 ALA n 1 38 ALA n 1 39 ASP n 1 40 ASP n 1 41 THR n 1 42 TRP n 1 43 GLU n 1 44 PRO n 1 45 PHE n 1 46 ALA n 1 47 SER n 1 48 GLY n 1 49 LYS n 1 50 THR n 1 51 SER n 1 52 GLU n 1 53 SER n 1 54 GLY n 1 55 GLU n 1 56 LEU n 1 57 HIS n 1 58 GLY n 1 59 LEU n 1 60 THR n 1 61 THR n 1 62 GLU n 1 63 GLU n 1 64 GLU n 1 65 PHE n 1 66 VAL n 1 67 GLU n 1 68 GLY n 1 69 ILE n 1 70 TYR n 1 71 LYS n 1 72 VAL n 1 73 GLU n 1 74 ILE n 1 75 ASP n 1 76 THR n 1 77 LYS n 1 78 SER n 1 79 TYR n 1 80 TRP n 1 81 LYS n 1 82 ALA n 1 83 LEU n 1 84 GLY n 1 85 ILE n 1 86 SER n 1 87 PRO n 1 88 PHE n 1 89 HIS n 1 90 GLU n 1 91 HIS n 1 92 ALA n 1 93 GLU n 1 94 VAL n 1 95 VAL n 1 96 PHE n 1 97 THR n 1 98 ALA n 1 99 ASN n 1 100 ASP n 1 101 SER n 1 102 GLY n 1 103 PRO n 1 104 ARG n 1 105 ARG n 1 106 TYR n 1 107 THR n 1 108 ILE n 1 109 ALA n 1 110 ALA n 1 111 LEU n 1 112 LEU n 1 113 SER n 1 114 PRO n 1 115 TYR n 1 116 SER n 1 117 TYR n 1 118 SER n 1 119 THR n 1 120 THR n 1 121 ALA n 1 122 VAL n 1 123 VAL n 1 124 THR n 1 125 ASN n 1 126 PRO n 1 127 LYS n 1 128 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 128 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TTR, PALB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1WZ non-polymer . '3-(dimethylamino)-5-[(E)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzoic acid' '(E)-3-(dimethylamino)-5-(4-hydroxy-3,5-dimethylstyryl)benzoic acid' 'C19 H21 N O3' 311.375 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 GLY 2 1 ? ? ? A . n A 1 3 PRO 3 2 ? ? ? A . n A 1 4 THR 4 3 ? ? ? A . n A 1 5 GLY 5 4 ? ? ? A . n A 1 6 THR 6 5 ? ? ? A . n A 1 7 GLY 7 6 ? ? ? A . n A 1 8 GLU 8 7 ? ? ? A . n A 1 9 SER 9 8 ? ? ? A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 CYS 11 10 10 CYS CYS A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 MET 14 13 13 MET MET A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 PRO 25 24 24 PRO PRO A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 ASN 28 27 27 ASN ASN A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 ASP 40 39 39 ASP ASP A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 TRP 42 41 41 TRP TRP A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 PHE 45 44 44 PHE PHE A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 GLU 52 51 51 GLU GLU A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 HIS 57 56 56 HIS HIS A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 LEU 59 58 58 LEU LEU A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 ILE 74 73 73 ILE ILE A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 LYS 77 76 76 LYS LYS A . n A 1 78 SER 78 77 77 SER SER A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 TRP 80 79 79 TRP TRP A . n A 1 81 LYS 81 80 80 LYS LYS A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 PRO 87 86 86 PRO PRO A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 HIS 89 88 88 HIS HIS A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 PHE 96 95 95 PHE PHE A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 PRO 103 102 102 PRO PRO A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 ARG 105 104 104 ARG ARG A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 ALA 110 109 109 ALA ALA A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 SER 113 112 112 SER SER A . n A 1 114 PRO 114 113 113 PRO PRO A . n A 1 115 TYR 115 114 114 TYR TYR A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 TYR 117 116 116 TYR TYR A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 VAL 122 121 121 VAL VAL A . n A 1 123 VAL 123 122 122 VAL VAL A . n A 1 124 THR 124 123 123 THR THR A . n A 1 125 ASN 125 124 124 ASN ASN A . n A 1 126 PRO 126 125 125 PRO PRO A . n A 1 127 LYS 127 126 ? ? ? A . n A 1 128 GLU 128 127 ? ? ? A . n B 1 1 MET 1 0 ? ? ? B . n B 1 2 GLY 2 1 ? ? ? B . n B 1 3 PRO 3 2 ? ? ? B . n B 1 4 THR 4 3 ? ? ? B . n B 1 5 GLY 5 4 ? ? ? B . n B 1 6 THR 6 5 ? ? ? B . n B 1 7 GLY 7 6 ? ? ? B . n B 1 8 GLU 8 7 ? ? ? B . n B 1 9 SER 9 8 ? ? ? B . n B 1 10 LYS 10 9 ? ? ? B . n B 1 11 CYS 11 10 10 CYS CYS B . n B 1 12 PRO 12 11 11 PRO PRO B . n B 1 13 LEU 13 12 12 LEU LEU B . n B 1 14 MET 14 13 13 MET MET B . n B 1 15 VAL 15 14 14 VAL VAL B . n B 1 16 LYS 16 15 15 LYS A2K B . n B 1 17 VAL 17 16 16 VAL VAL B . n B 1 18 LEU 18 17 17 LEU LEU B . n B 1 19 ASP 19 18 18 ASP ASP B . n B 1 20 ALA 20 19 19 ALA ALA B . n B 1 21 VAL 21 20 20 VAL VAL B . n B 1 22 ARG 22 21 21 ARG ARG B . n B 1 23 GLY 23 22 22 GLY GLY B . n B 1 24 SER 24 23 23 SER SER B . n B 1 25 PRO 25 24 24 PRO PRO B . n B 1 26 ALA 26 25 25 ALA ALA B . n B 1 27 ILE 27 26 26 ILE ILE B . n B 1 28 ASN 28 27 27 ASN ASN B . n B 1 29 VAL 29 28 28 VAL VAL B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 VAL 31 30 30 VAL VAL B . n B 1 32 HIS 32 31 31 HIS HIS B . n B 1 33 VAL 33 32 32 VAL VAL B . n B 1 34 PHE 34 33 33 PHE PHE B . n B 1 35 ARG 35 34 34 ARG ARG B . n B 1 36 LYS 36 35 35 LYS LYS B . n B 1 37 ALA 37 36 36 ALA ALA B . n B 1 38 ALA 38 37 37 ALA ALA B . n B 1 39 ASP 39 38 38 ASP ASP B . n B 1 40 ASP 40 39 39 ASP ASP B . n B 1 41 THR 41 40 40 THR THR B . n B 1 42 TRP 42 41 41 TRP TRP B . n B 1 43 GLU 43 42 42 GLU GLU B . n B 1 44 PRO 44 43 43 PRO PRO B . n B 1 45 PHE 45 44 44 PHE PHE B . n B 1 46 ALA 46 45 45 ALA ALA B . n B 1 47 SER 47 46 46 SER SER B . n B 1 48 GLY 48 47 47 GLY GLY B . n B 1 49 LYS 49 48 48 LYS LYS B . n B 1 50 THR 50 49 49 THR THR B . n B 1 51 SER 51 50 50 SER SER B . n B 1 52 GLU 52 51 51 GLU GLU B . n B 1 53 SER 53 52 52 SER SER B . n B 1 54 GLY 54 53 53 GLY GLY B . n B 1 55 GLU 55 54 54 GLU GLU B . n B 1 56 LEU 56 55 55 LEU LEU B . n B 1 57 HIS 57 56 56 HIS HIS B . n B 1 58 GLY 58 57 57 GLY GLY B . n B 1 59 LEU 59 58 58 LEU LEU B . n B 1 60 THR 60 59 59 THR THR B . n B 1 61 THR 61 60 60 THR THR B . n B 1 62 GLU 62 61 61 GLU GLU B . n B 1 63 GLU 63 62 62 GLU GLU B . n B 1 64 GLU 64 63 63 GLU GLU B . n B 1 65 PHE 65 64 64 PHE PHE B . n B 1 66 VAL 66 65 65 VAL VAL B . n B 1 67 GLU 67 66 66 GLU GLU B . n B 1 68 GLY 68 67 67 GLY GLY B . n B 1 69 ILE 69 68 68 ILE ILE B . n B 1 70 TYR 70 69 69 TYR TYR B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 VAL 72 71 71 VAL VAL B . n B 1 73 GLU 73 72 72 GLU GLU B . n B 1 74 ILE 74 73 73 ILE ILE B . n B 1 75 ASP 75 74 74 ASP ASP B . n B 1 76 THR 76 75 75 THR THR B . n B 1 77 LYS 77 76 76 LYS LYS B . n B 1 78 SER 78 77 77 SER SER B . n B 1 79 TYR 79 78 78 TYR TYR B . n B 1 80 TRP 80 79 79 TRP TRP B . n B 1 81 LYS 81 80 80 LYS LYS B . n B 1 82 ALA 82 81 81 ALA ALA B . n B 1 83 LEU 83 82 82 LEU LEU B . n B 1 84 GLY 84 83 83 GLY GLY B . n B 1 85 ILE 85 84 84 ILE ILE B . n B 1 86 SER 86 85 85 SER SER B . n B 1 87 PRO 87 86 86 PRO PRO B . n B 1 88 PHE 88 87 87 PHE PHE B . n B 1 89 HIS 89 88 88 HIS HIS B . n B 1 90 GLU 90 89 89 GLU GLU B . n B 1 91 HIS 91 90 90 HIS HIS B . n B 1 92 ALA 92 91 91 ALA ALA B . n B 1 93 GLU 93 92 92 GLU GLU B . n B 1 94 VAL 94 93 93 VAL VAL B . n B 1 95 VAL 95 94 94 VAL VAL B . n B 1 96 PHE 96 95 95 PHE PHE B . n B 1 97 THR 97 96 96 THR THR B . n B 1 98 ALA 98 97 97 ALA ALA B . n B 1 99 ASN 99 98 98 ASN ASN B . n B 1 100 ASP 100 99 99 ASP ASP B . n B 1 101 SER 101 100 100 SER SER B . n B 1 102 GLY 102 101 101 GLY GLY B . n B 1 103 PRO 103 102 102 PRO PRO B . n B 1 104 ARG 104 103 103 ARG ARG B . n B 1 105 ARG 105 104 104 ARG ARG B . n B 1 106 TYR 106 105 105 TYR TYR B . n B 1 107 THR 107 106 106 THR THR B . n B 1 108 ILE 108 107 107 ILE ILE B . n B 1 109 ALA 109 108 108 ALA ALA B . n B 1 110 ALA 110 109 109 ALA ALA B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 LEU 112 111 111 LEU LEU B . n B 1 113 SER 113 112 112 SER SER B . n B 1 114 PRO 114 113 113 PRO PRO B . n B 1 115 TYR 115 114 114 TYR TYR B . n B 1 116 SER 116 115 115 SER SER B . n B 1 117 TYR 117 116 116 TYR TYR B . n B 1 118 SER 118 117 117 SER SER B . n B 1 119 THR 119 118 118 THR THR B . n B 1 120 THR 120 119 119 THR THR B . n B 1 121 ALA 121 120 120 ALA ALA B . n B 1 122 VAL 122 121 121 VAL VAL B . n B 1 123 VAL 123 122 122 VAL VAL B . n B 1 124 THR 124 123 123 THR THR B . n B 1 125 ASN 125 124 124 ASN ASN B . n B 1 126 PRO 126 125 125 PRO PRO B . n B 1 127 LYS 127 126 ? ? ? B . n B 1 128 GLU 128 127 ? ? ? B . n C 1 1 MET 1 0 ? ? ? C . n C 1 2 GLY 2 1 ? ? ? C . n C 1 3 PRO 3 2 ? ? ? C . n C 1 4 THR 4 3 ? ? ? C . n C 1 5 GLY 5 4 ? ? ? C . n C 1 6 THR 6 5 ? ? ? C . n C 1 7 GLY 7 6 ? ? ? C . n C 1 8 GLU 8 7 ? ? ? C . n C 1 9 SER 9 8 ? ? ? C . n C 1 10 LYS 10 9 9 LYS LYS C . n C 1 11 CYS 11 10 10 CYS CYS C . n C 1 12 PRO 12 11 11 PRO PRO C . n C 1 13 LEU 13 12 12 LEU LEU C . n C 1 14 MET 14 13 13 MET MET C . n C 1 15 VAL 15 14 14 VAL VAL C . n C 1 16 LYS 16 15 15 LYS A2K C . n C 1 17 VAL 17 16 16 VAL VAL C . n C 1 18 LEU 18 17 17 LEU LEU C . n C 1 19 ASP 19 18 18 ASP ASP C . n C 1 20 ALA 20 19 19 ALA ALA C . n C 1 21 VAL 21 20 20 VAL VAL C . n C 1 22 ARG 22 21 21 ARG ARG C . n C 1 23 GLY 23 22 22 GLY GLY C . n C 1 24 SER 24 23 23 SER SER C . n C 1 25 PRO 25 24 24 PRO PRO C . n C 1 26 ALA 26 25 25 ALA ALA C . n C 1 27 ILE 27 26 26 ILE ILE C . n C 1 28 ASN 28 27 27 ASN ASN C . n C 1 29 VAL 29 28 28 VAL VAL C . n C 1 30 ALA 30 29 29 ALA ALA C . n C 1 31 VAL 31 30 30 VAL VAL C . n C 1 32 HIS 32 31 31 HIS HIS C . n C 1 33 VAL 33 32 32 VAL VAL C . n C 1 34 PHE 34 33 33 PHE PHE C . n C 1 35 ARG 35 34 34 ARG ARG C . n C 1 36 LYS 36 35 35 LYS LYS C . n C 1 37 ALA 37 36 36 ALA ALA C . n C 1 38 ALA 38 37 37 ALA ALA C . n C 1 39 ASP 39 38 38 ASP ASP C . n C 1 40 ASP 40 39 39 ASP ASP C . n C 1 41 THR 41 40 40 THR THR C . n C 1 42 TRP 42 41 41 TRP TRP C . n C 1 43 GLU 43 42 42 GLU GLU C . n C 1 44 PRO 44 43 43 PRO PRO C . n C 1 45 PHE 45 44 44 PHE PHE C . n C 1 46 ALA 46 45 45 ALA ALA C . n C 1 47 SER 47 46 46 SER SER C . n C 1 48 GLY 48 47 47 GLY GLY C . n C 1 49 LYS 49 48 48 LYS LYS C . n C 1 50 THR 50 49 49 THR THR C . n C 1 51 SER 51 50 50 SER SER C . n C 1 52 GLU 52 51 51 GLU GLU C . n C 1 53 SER 53 52 52 SER SER C . n C 1 54 GLY 54 53 53 GLY GLY C . n C 1 55 GLU 55 54 54 GLU GLU C . n C 1 56 LEU 56 55 55 LEU LEU C . n C 1 57 HIS 57 56 56 HIS HIS C . n C 1 58 GLY 58 57 57 GLY GLY C . n C 1 59 LEU 59 58 58 LEU LEU C . n C 1 60 THR 60 59 59 THR THR C . n C 1 61 THR 61 60 60 THR THR C . n C 1 62 GLU 62 61 61 GLU GLU C . n C 1 63 GLU 63 62 62 GLU GLU C . n C 1 64 GLU 64 63 63 GLU GLU C . n C 1 65 PHE 65 64 64 PHE PHE C . n C 1 66 VAL 66 65 65 VAL VAL C . n C 1 67 GLU 67 66 66 GLU GLU C . n C 1 68 GLY 68 67 67 GLY GLY C . n C 1 69 ILE 69 68 68 ILE ILE C . n C 1 70 TYR 70 69 69 TYR TYR C . n C 1 71 LYS 71 70 70 LYS LYS C . n C 1 72 VAL 72 71 71 VAL VAL C . n C 1 73 GLU 73 72 72 GLU GLU C . n C 1 74 ILE 74 73 73 ILE ILE C . n C 1 75 ASP 75 74 74 ASP ASP C . n C 1 76 THR 76 75 75 THR THR C . n C 1 77 LYS 77 76 76 LYS LYS C . n C 1 78 SER 78 77 77 SER SER C . n C 1 79 TYR 79 78 78 TYR TYR C . n C 1 80 TRP 80 79 79 TRP TRP C . n C 1 81 LYS 81 80 80 LYS LYS C . n C 1 82 ALA 82 81 81 ALA ALA C . n C 1 83 LEU 83 82 82 LEU LEU C . n C 1 84 GLY 84 83 83 GLY GLY C . n C 1 85 ILE 85 84 84 ILE ILE C . n C 1 86 SER 86 85 85 SER SER C . n C 1 87 PRO 87 86 86 PRO PRO C . n C 1 88 PHE 88 87 87 PHE PHE C . n C 1 89 HIS 89 88 88 HIS HIS C . n C 1 90 GLU 90 89 89 GLU GLU C . n C 1 91 HIS 91 90 90 HIS HIS C . n C 1 92 ALA 92 91 91 ALA ALA C . n C 1 93 GLU 93 92 92 GLU GLU C . n C 1 94 VAL 94 93 93 VAL VAL C . n C 1 95 VAL 95 94 94 VAL VAL C . n C 1 96 PHE 96 95 95 PHE PHE C . n C 1 97 THR 97 96 96 THR THR C . n C 1 98 ALA 98 97 97 ALA ALA C . n C 1 99 ASN 99 98 98 ASN ASN C . n C 1 100 ASP 100 99 99 ASP ASP C . n C 1 101 SER 101 100 100 SER SER C . n C 1 102 GLY 102 101 101 GLY GLY C . n C 1 103 PRO 103 102 102 PRO PRO C . n C 1 104 ARG 104 103 103 ARG ARG C . n C 1 105 ARG 105 104 104 ARG ARG C . n C 1 106 TYR 106 105 105 TYR TYR C . n C 1 107 THR 107 106 106 THR THR C . n C 1 108 ILE 108 107 107 ILE ILE C . n C 1 109 ALA 109 108 108 ALA ALA C . n C 1 110 ALA 110 109 109 ALA ALA C . n C 1 111 LEU 111 110 110 LEU LEU C . n C 1 112 LEU 112 111 111 LEU LEU C . n C 1 113 SER 113 112 112 SER SER C . n C 1 114 PRO 114 113 113 PRO PRO C . n C 1 115 TYR 115 114 114 TYR TYR C . n C 1 116 SER 116 115 115 SER SER C . n C 1 117 TYR 117 116 116 TYR TYR C . n C 1 118 SER 118 117 117 SER SER C . n C 1 119 THR 119 118 118 THR THR C . n C 1 120 THR 120 119 119 THR THR C . n C 1 121 ALA 121 120 120 ALA ALA C . n C 1 122 VAL 122 121 121 VAL VAL C . n C 1 123 VAL 123 122 122 VAL VAL C . n C 1 124 THR 124 123 123 THR THR C . n C 1 125 ASN 125 124 124 ASN ASN C . n C 1 126 PRO 126 125 125 PRO PRO C . n C 1 127 LYS 127 126 ? ? ? C . n C 1 128 GLU 128 127 ? ? ? C . n D 1 1 MET 1 0 ? ? ? D . n D 1 2 GLY 2 1 ? ? ? D . n D 1 3 PRO 3 2 ? ? ? D . n D 1 4 THR 4 3 ? ? ? D . n D 1 5 GLY 5 4 ? ? ? D . n D 1 6 THR 6 5 ? ? ? D . n D 1 7 GLY 7 6 ? ? ? D . n D 1 8 GLU 8 7 ? ? ? D . n D 1 9 SER 9 8 ? ? ? D . n D 1 10 LYS 10 9 9 LYS LYS D . n D 1 11 CYS 11 10 10 CYS CYS D . n D 1 12 PRO 12 11 11 PRO PRO D . n D 1 13 LEU 13 12 12 LEU LEU D . n D 1 14 MET 14 13 13 MET MET D . n D 1 15 VAL 15 14 14 VAL VAL D . n D 1 16 LYS 16 15 15 LYS LYS D . n D 1 17 VAL 17 16 16 VAL VAL D . n D 1 18 LEU 18 17 17 LEU LEU D . n D 1 19 ASP 19 18 18 ASP ASP D . n D 1 20 ALA 20 19 19 ALA ALA D . n D 1 21 VAL 21 20 20 VAL VAL D . n D 1 22 ARG 22 21 21 ARG ARG D . n D 1 23 GLY 23 22 22 GLY GLY D . n D 1 24 SER 24 23 23 SER SER D . n D 1 25 PRO 25 24 24 PRO PRO D . n D 1 26 ALA 26 25 25 ALA ALA D . n D 1 27 ILE 27 26 26 ILE ILE D . n D 1 28 ASN 28 27 27 ASN ASN D . n D 1 29 VAL 29 28 28 VAL VAL D . n D 1 30 ALA 30 29 29 ALA ALA D . n D 1 31 VAL 31 30 30 VAL VAL D . n D 1 32 HIS 32 31 31 HIS HIS D . n D 1 33 VAL 33 32 32 VAL VAL D . n D 1 34 PHE 34 33 33 PHE PHE D . n D 1 35 ARG 35 34 34 ARG ARG D . n D 1 36 LYS 36 35 35 LYS LYS D . n D 1 37 ALA 37 36 36 ALA ALA D . n D 1 38 ALA 38 37 37 ALA ALA D . n D 1 39 ASP 39 38 38 ASP ASP D . n D 1 40 ASP 40 39 39 ASP ASP D . n D 1 41 THR 41 40 40 THR THR D . n D 1 42 TRP 42 41 41 TRP TRP D . n D 1 43 GLU 43 42 42 GLU GLU D . n D 1 44 PRO 44 43 43 PRO PRO D . n D 1 45 PHE 45 44 44 PHE PHE D . n D 1 46 ALA 46 45 45 ALA ALA D . n D 1 47 SER 47 46 46 SER SER D . n D 1 48 GLY 48 47 47 GLY GLY D . n D 1 49 LYS 49 48 48 LYS LYS D . n D 1 50 THR 50 49 49 THR THR D . n D 1 51 SER 51 50 50 SER SER D . n D 1 52 GLU 52 51 51 GLU GLU D . n D 1 53 SER 53 52 52 SER SER D . n D 1 54 GLY 54 53 53 GLY GLY D . n D 1 55 GLU 55 54 54 GLU GLU D . n D 1 56 LEU 56 55 55 LEU LEU D . n D 1 57 HIS 57 56 56 HIS HIS D . n D 1 58 GLY 58 57 57 GLY GLY D . n D 1 59 LEU 59 58 58 LEU LEU D . n D 1 60 THR 60 59 59 THR THR D . n D 1 61 THR 61 60 60 THR THR D . n D 1 62 GLU 62 61 61 GLU GLU D . n D 1 63 GLU 63 62 62 GLU GLU D . n D 1 64 GLU 64 63 63 GLU GLU D . n D 1 65 PHE 65 64 64 PHE PHE D . n D 1 66 VAL 66 65 65 VAL VAL D . n D 1 67 GLU 67 66 66 GLU GLU D . n D 1 68 GLY 68 67 67 GLY GLY D . n D 1 69 ILE 69 68 68 ILE ILE D . n D 1 70 TYR 70 69 69 TYR TYR D . n D 1 71 LYS 71 70 70 LYS LYS D . n D 1 72 VAL 72 71 71 VAL VAL D . n D 1 73 GLU 73 72 72 GLU GLU D . n D 1 74 ILE 74 73 73 ILE ILE D . n D 1 75 ASP 75 74 74 ASP ASP D . n D 1 76 THR 76 75 75 THR THR D . n D 1 77 LYS 77 76 76 LYS LYS D . n D 1 78 SER 78 77 77 SER SER D . n D 1 79 TYR 79 78 78 TYR TYR D . n D 1 80 TRP 80 79 79 TRP TRP D . n D 1 81 LYS 81 80 80 LYS LYS D . n D 1 82 ALA 82 81 81 ALA ALA D . n D 1 83 LEU 83 82 82 LEU LEU D . n D 1 84 GLY 84 83 83 GLY GLY D . n D 1 85 ILE 85 84 84 ILE ILE D . n D 1 86 SER 86 85 85 SER SER D . n D 1 87 PRO 87 86 86 PRO PRO D . n D 1 88 PHE 88 87 87 PHE PHE D . n D 1 89 HIS 89 88 88 HIS HIS D . n D 1 90 GLU 90 89 89 GLU GLU D . n D 1 91 HIS 91 90 90 HIS HIS D . n D 1 92 ALA 92 91 91 ALA ALA D . n D 1 93 GLU 93 92 92 GLU GLU D . n D 1 94 VAL 94 93 93 VAL VAL D . n D 1 95 VAL 95 94 94 VAL VAL D . n D 1 96 PHE 96 95 95 PHE PHE D . n D 1 97 THR 97 96 96 THR THR D . n D 1 98 ALA 98 97 97 ALA ALA D . n D 1 99 ASN 99 98 98 ASN ASN D . n D 1 100 ASP 100 99 99 ASP ASP D . n D 1 101 SER 101 100 100 SER SER D . n D 1 102 GLY 102 101 101 GLY GLY D . n D 1 103 PRO 103 102 102 PRO PRO D . n D 1 104 ARG 104 103 103 ARG ARG D . n D 1 105 ARG 105 104 104 ARG ARG D . n D 1 106 TYR 106 105 105 TYR TYR D . n D 1 107 THR 107 106 106 THR THR D . n D 1 108 ILE 108 107 107 ILE ILE D . n D 1 109 ALA 109 108 108 ALA ALA D . n D 1 110 ALA 110 109 109 ALA ALA D . n D 1 111 LEU 111 110 110 LEU LEU D . n D 1 112 LEU 112 111 111 LEU LEU D . n D 1 113 SER 113 112 112 SER SER D . n D 1 114 PRO 114 113 113 PRO PRO D . n D 1 115 TYR 115 114 114 TYR TYR D . n D 1 116 SER 116 115 115 SER SER D . n D 1 117 TYR 117 116 116 TYR TYR D . n D 1 118 SER 118 117 117 SER SER D . n D 1 119 THR 119 118 118 THR THR D . n D 1 120 THR 120 119 119 THR THR D . n D 1 121 ALA 121 120 120 ALA ALA D . n D 1 122 VAL 122 121 121 VAL VAL D . n D 1 123 VAL 123 122 122 VAL VAL D . n D 1 124 THR 124 123 123 THR THR D . n D 1 125 ASN 125 124 124 ASN ASN D . n D 1 126 PRO 126 125 ? ? ? D . n D 1 127 LYS 127 126 ? ? ? D . n D 1 128 GLU 128 127 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1WZ 1 201 15 1WZ A2K B . F 2 1WZ 1 201 15 1WZ A2K C . G 3 HOH 1 201 1 HOH HOH A . G 3 HOH 2 202 28 HOH HOH A . G 3 HOH 3 203 15 HOH HOH A . G 3 HOH 4 204 14 HOH HOH A . G 3 HOH 5 205 17 HOH HOH A . G 3 HOH 6 206 16 HOH HOH A . H 3 HOH 1 301 19 HOH HOH B . H 3 HOH 2 302 21 HOH HOH B . H 3 HOH 3 303 20 HOH HOH B . H 3 HOH 4 304 18 HOH HOH B . H 3 HOH 5 305 29 HOH HOH B . H 3 HOH 6 306 2 HOH HOH B . I 3 HOH 1 301 22 HOH HOH C . I 3 HOH 2 302 3 HOH HOH C . I 3 HOH 3 303 4 HOH HOH C . I 3 HOH 4 304 23 HOH HOH C . I 3 HOH 5 305 12 HOH HOH C . I 3 HOH 6 306 7 HOH HOH C . I 3 HOH 7 307 13 HOH HOH C . I 3 HOH 8 308 5 HOH HOH C . J 3 HOH 1 201 6 HOH HOH D . J 3 HOH 2 202 24 HOH HOH D . J 3 HOH 3 203 11 HOH HOH D . J 3 HOH 4 204 9 HOH HOH D . J 3 HOH 5 205 25 HOH HOH D . J 3 HOH 6 206 10 HOH HOH D . J 3 HOH 7 207 8 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 9 ? CG ? A LYS 10 CG 2 1 Y 1 A LYS 9 ? CD ? A LYS 10 CD 3 1 Y 1 A LYS 9 ? CE ? A LYS 10 CE 4 1 Y 1 A LYS 9 ? NZ ? A LYS 10 NZ 5 1 Y 1 A THR 59 ? OG1 ? A THR 60 OG1 6 1 Y 1 A THR 59 ? CG2 ? A THR 60 CG2 7 1 Y 1 B GLU 92 ? CG ? B GLU 93 CG 8 1 Y 1 B GLU 92 ? CD ? B GLU 93 CD 9 1 Y 1 B GLU 92 ? OE1 ? B GLU 93 OE1 10 1 Y 1 B GLU 92 ? OE2 ? B GLU 93 OE2 11 1 Y 1 B SER 100 ? OG ? B SER 101 OG 12 1 Y 1 C LYS 9 ? CG ? C LYS 10 CG 13 1 Y 1 C LYS 9 ? CD ? C LYS 10 CD 14 1 Y 1 C LYS 9 ? CE ? C LYS 10 CE 15 1 Y 1 C LYS 9 ? NZ ? C LYS 10 NZ 16 1 Y 1 D LYS 9 ? CG ? D LYS 10 CG 17 1 Y 1 D LYS 9 ? CD ? D LYS 10 CD 18 1 Y 1 D LYS 9 ? CE ? D LYS 10 CE 19 1 Y 1 D LYS 9 ? NZ ? D LYS 10 NZ # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8VE1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VE1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8VE1 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3728 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.474 ? 5094 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.103 ? 500 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 573 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 648 ? f_plane_restr ? ? # _struct.entry_id 8VE1 _struct.title 'Human transthyretin covalently modified with A2-derived stilbene in the canonical conformation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VE1 _struct_keywords.text 'Amyloidosis, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 21 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8VE1 A 2 ? 128 ? P02766 21 ? 147 ? 1 127 2 1 8VE1 B 2 ? 128 ? P02766 21 ? 147 ? 1 127 3 1 8VE1 C 2 ? 128 ? P02766 21 ? 147 ? 1 127 4 1 8VE1 D 2 ? 128 ? P02766 21 ? 147 ? 1 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8VE1 MET A 1 ? UNP P02766 ? ? 'initiating methionine' 0 1 2 8VE1 MET B 1 ? UNP P02766 ? ? 'initiating methionine' 0 2 3 8VE1 MET C 1 ? UNP P02766 ? ? 'initiating methionine' 0 3 4 8VE1 MET D 1 ? UNP P02766 ? ? 'initiating methionine' 0 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 75 ? GLY A 84 ? ASP A 74 GLY A 83 1 ? 10 HELX_P HELX_P2 AA2 ASP B 75 ? ALA B 82 ? ASP B 74 ALA B 81 1 ? 8 HELX_P HELX_P3 AA3 ASP C 75 ? LEU C 83 ? ASP C 74 LEU C 82 1 ? 9 HELX_P HELX_P4 AA4 ASP D 75 ? LEU D 83 ? ASP D 74 LEU D 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? B LYS 16 NZ ? ? ? 1_555 E 1WZ . CAO ? ? B LYS 15 B 1WZ 201 1_555 ? ? ? ? ? ? ? 1.472 ? ? covale2 covale none ? C LYS 16 NZ ? ? ? 1_555 F 1WZ . CAO ? ? C LYS 15 C 1WZ 201 1_555 ? ? ? ? ? ? ? 1.477 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 8 ? AA4 ? 8 ? AA5 ? 8 ? AA6 ? 4 ? AA7 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? parallel AA4 7 8 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA5 6 7 ? parallel AA5 7 8 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 24 ? PRO A 25 ? SER A 23 PRO A 24 AA1 2 LEU A 13 ? ASP A 19 ? LEU A 12 ASP A 18 AA1 3 ARG A 105 ? LEU A 112 ? ARG A 104 LEU A 111 AA1 4 SER A 116 ? THR A 124 ? SER A 115 THR A 123 AA1 5 SER B 116 ? THR B 124 ? SER B 115 THR B 123 AA1 6 ARG B 105 ? LEU B 112 ? ARG B 104 LEU B 111 AA1 7 LEU B 13 ? ASP B 19 ? LEU B 12 ASP B 18 AA1 8 SER B 24 ? PRO B 25 ? SER B 23 PRO B 24 AA2 1 GLU A 55 ? LEU A 56 ? GLU A 54 LEU A 55 AA2 2 LEU A 13 ? ASP A 19 ? LEU A 12 ASP A 18 AA2 3 ARG A 105 ? LEU A 112 ? ARG A 104 LEU A 111 AA2 4 SER A 116 ? THR A 124 ? SER A 115 THR A 123 AA2 5 SER B 116 ? THR B 124 ? SER B 115 THR B 123 AA2 6 ARG B 105 ? LEU B 112 ? ARG B 104 LEU B 111 AA2 7 LEU B 13 ? ASP B 19 ? LEU B 12 ASP B 18 AA2 8 GLU B 55 ? LEU B 56 ? GLU B 54 LEU B 55 AA3 1 TRP A 42 ? LYS A 49 ? TRP A 41 LYS A 48 AA3 2 ALA A 30 ? LYS A 36 ? ALA A 29 LYS A 35 AA3 3 GLY A 68 ? ILE A 74 ? GLY A 67 ILE A 73 AA3 4 ALA A 92 ? ALA A 98 ? ALA A 91 ALA A 97 AA3 5 HIS B 89 ? ALA B 98 ? HIS B 88 ALA B 97 AA3 6 GLY B 68 ? ILE B 74 ? GLY B 67 ILE B 73 AA3 7 ALA B 30 ? LYS B 36 ? ALA B 29 LYS B 35 AA3 8 TRP B 42 ? LYS B 49 ? TRP B 41 LYS B 48 AA4 1 SER C 24 ? PRO C 25 ? SER C 23 PRO C 24 AA4 2 LEU C 13 ? ASP C 19 ? LEU C 12 ASP C 18 AA4 3 ARG C 105 ? LEU C 112 ? ARG C 104 LEU C 111 AA4 4 SER C 116 ? THR C 124 ? SER C 115 THR C 123 AA4 5 SER D 116 ? THR D 124 ? SER D 115 THR D 123 AA4 6 ARG D 105 ? LEU D 112 ? ARG D 104 LEU D 111 AA4 7 LEU D 13 ? ASP D 19 ? LEU D 12 ASP D 18 AA4 8 SER D 24 ? PRO D 25 ? SER D 23 PRO D 24 AA5 1 SER C 24 ? PRO C 25 ? SER C 23 PRO C 24 AA5 2 LEU C 13 ? ASP C 19 ? LEU C 12 ASP C 18 AA5 3 ARG C 105 ? LEU C 112 ? ARG C 104 LEU C 111 AA5 4 SER C 116 ? THR C 124 ? SER C 115 THR C 123 AA5 5 SER D 116 ? THR D 124 ? SER D 115 THR D 123 AA5 6 ARG D 105 ? LEU D 112 ? ARG D 104 LEU D 111 AA5 7 LEU D 13 ? ASP D 19 ? LEU D 12 ASP D 18 AA5 8 GLU D 55 ? LEU D 56 ? GLU D 54 LEU D 55 AA6 1 TRP C 42 ? LYS C 49 ? TRP C 41 LYS C 48 AA6 2 ALA C 30 ? LYS C 36 ? ALA C 29 LYS C 35 AA6 3 GLY C 68 ? ILE C 74 ? GLY C 67 ILE C 73 AA6 4 ALA C 92 ? ALA C 98 ? ALA C 91 ALA C 97 AA7 1 TRP D 42 ? LYS D 49 ? TRP D 41 LYS D 48 AA7 2 ALA D 30 ? LYS D 36 ? ALA D 29 LYS D 35 AA7 3 GLY D 68 ? ILE D 74 ? GLY D 67 ILE D 73 AA7 4 ALA D 92 ? ALA D 98 ? ALA D 91 ALA D 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 24 ? O SER A 23 N ASP A 19 ? N ASP A 18 AA1 2 3 N LYS A 16 ? N LYS A 15 O ILE A 108 ? O ILE A 107 AA1 3 4 N LEU A 111 ? N LEU A 110 O SER A 118 ? O SER A 117 AA1 4 5 N THR A 119 ? N THR A 118 O TYR B 117 ? O TYR B 116 AA1 5 6 O SER B 118 ? O SER B 117 N LEU B 111 ? N LEU B 110 AA1 6 7 O ILE B 108 ? O ILE B 107 N LYS B 16 ? N LYS B 15 AA1 7 8 N ASP B 19 ? N ASP B 18 O SER B 24 ? O SER B 23 AA2 1 2 O LEU A 56 ? O LEU A 55 N VAL A 15 ? N VAL A 14 AA2 2 3 N LYS A 16 ? N LYS A 15 O ILE A 108 ? O ILE A 107 AA2 3 4 N LEU A 111 ? N LEU A 110 O SER A 118 ? O SER A 117 AA2 4 5 N THR A 119 ? N THR A 118 O TYR B 117 ? O TYR B 116 AA2 5 6 O SER B 118 ? O SER B 117 N LEU B 111 ? N LEU B 110 AA2 6 7 O ILE B 108 ? O ILE B 107 N LYS B 16 ? N LYS B 15 AA2 7 8 N VAL B 15 ? N VAL B 14 O LEU B 56 ? O LEU B 55 AA3 1 2 O ALA A 46 ? O ALA A 45 N VAL A 33 ? N VAL A 32 AA3 2 3 N PHE A 34 ? N PHE A 33 O LYS A 71 ? O LYS A 70 AA3 3 4 N VAL A 72 ? N VAL A 71 O VAL A 94 ? O VAL A 93 AA3 4 5 N VAL A 95 ? N VAL A 94 O GLU B 90 ? O GLU B 89 AA3 5 6 O ALA B 92 ? O ALA B 91 N ILE B 74 ? N ILE B 73 AA3 6 7 O GLU B 73 ? O GLU B 72 N HIS B 32 ? N HIS B 31 AA3 7 8 N VAL B 33 ? N VAL B 32 O ALA B 46 ? O ALA B 45 AA4 1 2 O SER C 24 ? O SER C 23 N ASP C 19 ? N ASP C 18 AA4 2 3 N LYS C 16 ? N LYS C 15 O ILE C 108 ? O ILE C 107 AA4 3 4 N LEU C 111 ? N LEU C 110 O SER C 118 ? O SER C 117 AA4 4 5 N THR C 119 ? N THR C 118 O TYR D 117 ? O TYR D 116 AA4 5 6 O SER D 118 ? O SER D 117 N LEU D 111 ? N LEU D 110 AA4 6 7 O ILE D 108 ? O ILE D 107 N LYS D 16 ? N LYS D 15 AA4 7 8 N ASP D 19 ? N ASP D 18 O SER D 24 ? O SER D 23 AA5 1 2 O SER C 24 ? O SER C 23 N ASP C 19 ? N ASP C 18 AA5 2 3 N LYS C 16 ? N LYS C 15 O ILE C 108 ? O ILE C 107 AA5 3 4 N LEU C 111 ? N LEU C 110 O SER C 118 ? O SER C 117 AA5 4 5 N THR C 119 ? N THR C 118 O TYR D 117 ? O TYR D 116 AA5 5 6 O SER D 118 ? O SER D 117 N LEU D 111 ? N LEU D 110 AA5 6 7 O ILE D 108 ? O ILE D 107 N LYS D 16 ? N LYS D 15 AA5 7 8 N VAL D 15 ? N VAL D 14 O LEU D 56 ? O LEU D 55 AA6 1 2 O GLU C 43 ? O GLU C 42 N ARG C 35 ? N ARG C 34 AA6 2 3 N HIS C 32 ? N HIS C 31 O GLU C 73 ? O GLU C 72 AA6 3 4 N ILE C 74 ? N ILE C 73 O ALA C 92 ? O ALA C 91 AA7 1 2 O PHE D 45 ? O PHE D 44 N VAL D 33 ? N VAL D 32 AA7 2 3 N HIS D 32 ? N HIS D 31 O GLU D 73 ? O GLU D 72 AA7 3 4 N GLY D 68 ? N GLY D 67 O ALA D 98 ? O ALA D 97 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 59 ? ? -161.86 -167.65 2 1 ASP B 38 ? ? -95.46 30.57 3 1 SER D 50 ? ? -79.20 -169.85 # _pdbx_entry_details.entry_id 8VE1 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8VE1 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8VE1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 289981 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.6 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name Transthyretin _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 8VE1 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size 5 _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 50 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8VE1 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min 500 _em_imaging.calibrated_defocus_max 1500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 73000 _em_imaging.calibrated_magnification 88968 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum 78 _em_imaging.recording_temperature_maximum 85 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ;Graphene grids were treated with UV/ozone using the UVOCS T10xT10 system. A 10-minute warmup run was performed immediately prior to inserting and treating the grids for 4 minutes. ; _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8VE1 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 279 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ;3 uL of sample were applied onto the graphene side of the grid after it was mounted on the plunger (always at the same height), and immediately blotted for 6 seconds by holding a 1 x 6 cm piece of Whatman 1 filter paper parallel to the grid, in full contact. Timing was kept with the help of a metronome. The blotting countdown was started after the blotted liquid spot on the filter paper stopped spreading and the grid was plunged in liquid ethane at the same time the blotting paper was pulled back, in a single motion. ; # _em_experiment.entry_id 8VE1 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8VE1 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A GLY 1 ? A GLY 2 3 1 Y 1 A PRO 2 ? A PRO 3 4 1 Y 1 A THR 3 ? A THR 4 5 1 Y 1 A GLY 4 ? A GLY 5 6 1 Y 1 A THR 5 ? A THR 6 7 1 Y 1 A GLY 6 ? A GLY 7 8 1 Y 1 A GLU 7 ? A GLU 8 9 1 Y 1 A SER 8 ? A SER 9 10 1 Y 1 A LYS 126 ? A LYS 127 11 1 Y 1 A GLU 127 ? A GLU 128 12 1 Y 1 B MET 0 ? B MET 1 13 1 Y 1 B GLY 1 ? B GLY 2 14 1 Y 1 B PRO 2 ? B PRO 3 15 1 Y 1 B THR 3 ? B THR 4 16 1 Y 1 B GLY 4 ? B GLY 5 17 1 Y 1 B THR 5 ? B THR 6 18 1 Y 1 B GLY 6 ? B GLY 7 19 1 Y 1 B GLU 7 ? B GLU 8 20 1 Y 1 B SER 8 ? B SER 9 21 1 Y 1 B LYS 9 ? B LYS 10 22 1 Y 1 B LYS 126 ? B LYS 127 23 1 Y 1 B GLU 127 ? B GLU 128 24 1 Y 1 C MET 0 ? C MET 1 25 1 Y 1 C GLY 1 ? C GLY 2 26 1 Y 1 C PRO 2 ? C PRO 3 27 1 Y 1 C THR 3 ? C THR 4 28 1 Y 1 C GLY 4 ? C GLY 5 29 1 Y 1 C THR 5 ? C THR 6 30 1 Y 1 C GLY 6 ? C GLY 7 31 1 Y 1 C GLU 7 ? C GLU 8 32 1 Y 1 C SER 8 ? C SER 9 33 1 Y 1 C LYS 126 ? C LYS 127 34 1 Y 1 C GLU 127 ? C GLU 128 35 1 Y 1 D MET 0 ? D MET 1 36 1 Y 1 D GLY 1 ? D GLY 2 37 1 Y 1 D PRO 2 ? D PRO 3 38 1 Y 1 D THR 3 ? D THR 4 39 1 Y 1 D GLY 4 ? D GLY 5 40 1 Y 1 D THR 5 ? D THR 6 41 1 Y 1 D GLY 6 ? D GLY 7 42 1 Y 1 D GLU 7 ? D GLU 8 43 1 Y 1 D SER 8 ? D SER 9 44 1 Y 1 D PRO 125 ? D PRO 126 45 1 Y 1 D LYS 126 ? D LYS 127 46 1 Y 1 D GLU 127 ? D GLU 128 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1WZ CAA C N N 1 1WZ CAP C Y N 2 1WZ CAJ C Y N 3 1WZ CAT C Y N 4 1WZ OAG O N N 5 1WZ CAQ C Y N 6 1WZ CAB C N N 7 1WZ CAK C Y N 8 1WZ CAR C Y N 9 1WZ CAH C N N 10 1WZ CAI C N N 11 1WZ CAS C Y N 12 1WZ CAM C Y N 13 1WZ CAL C Y N 14 1WZ CAU C Y N 15 1WZ CAO C N N 16 1WZ OAF O N N 17 1WZ OAE O N N 18 1WZ CAN C Y N 19 1WZ CAV C Y N 20 1WZ NAW N N N 21 1WZ CAD C N N 22 1WZ CAC C N N 23 1WZ H1 H N N 24 1WZ H2 H N N 25 1WZ H3 H N N 26 1WZ H4 H N N 27 1WZ H5 H N N 28 1WZ H6 H N N 29 1WZ H7 H N N 30 1WZ H8 H N N 31 1WZ H9 H N N 32 1WZ H10 H N N 33 1WZ H11 H N N 34 1WZ H12 H N N 35 1WZ H13 H N N 36 1WZ H14 H N N 37 1WZ H15 H N N 38 1WZ H16 H N N 39 1WZ H17 H N N 40 1WZ H18 H N N 41 1WZ H19 H N N 42 1WZ H20 H N N 43 1WZ H21 H N N 44 ALA N N N N 45 ALA CA C N S 46 ALA C C N N 47 ALA O O N N 48 ALA CB C N N 49 ALA OXT O N N 50 ALA H H N N 51 ALA H2 H N N 52 ALA HA H N N 53 ALA HB1 H N N 54 ALA HB2 H N N 55 ALA HB3 H N N 56 ALA HXT H N N 57 ARG N N N N 58 ARG CA C N S 59 ARG C C N N 60 ARG O O N N 61 ARG CB C N N 62 ARG CG C N N 63 ARG CD C N N 64 ARG NE N N N 65 ARG CZ C N N 66 ARG NH1 N N N 67 ARG NH2 N N N 68 ARG OXT O N N 69 ARG H H N N 70 ARG H2 H N N 71 ARG HA H N N 72 ARG HB2 H N N 73 ARG HB3 H N N 74 ARG HG2 H N N 75 ARG HG3 H N N 76 ARG HD2 H N N 77 ARG HD3 H N N 78 ARG HE H N N 79 ARG HH11 H N N 80 ARG HH12 H N N 81 ARG HH21 H N N 82 ARG HH22 H N N 83 ARG HXT H N N 84 ASN N N N N 85 ASN CA C N S 86 ASN C C N N 87 ASN O O N N 88 ASN CB C N N 89 ASN CG C N N 90 ASN OD1 O N N 91 ASN ND2 N N N 92 ASN OXT O N N 93 ASN H H N N 94 ASN H2 H N N 95 ASN HA H N N 96 ASN HB2 H N N 97 ASN HB3 H N N 98 ASN HD21 H N N 99 ASN HD22 H N N 100 ASN HXT H N N 101 ASP N N N N 102 ASP CA C N S 103 ASP C C N N 104 ASP O O N N 105 ASP CB C N N 106 ASP CG C N N 107 ASP OD1 O N N 108 ASP OD2 O N N 109 ASP OXT O N N 110 ASP H H N N 111 ASP H2 H N N 112 ASP HA H N N 113 ASP HB2 H N N 114 ASP HB3 H N N 115 ASP HD2 H N N 116 ASP HXT H N N 117 CYS N N N N 118 CYS CA C N R 119 CYS C C N N 120 CYS O O N N 121 CYS CB C N N 122 CYS SG S N N 123 CYS OXT O N N 124 CYS H H N N 125 CYS H2 H N N 126 CYS HA H N N 127 CYS HB2 H N N 128 CYS HB3 H N N 129 CYS HG H N N 130 CYS HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 PHE N N N N 274 PHE CA C N S 275 PHE C C N N 276 PHE O O N N 277 PHE CB C N N 278 PHE CG C Y N 279 PHE CD1 C Y N 280 PHE CD2 C Y N 281 PHE CE1 C Y N 282 PHE CE2 C Y N 283 PHE CZ C Y N 284 PHE OXT O N N 285 PHE H H N N 286 PHE H2 H N N 287 PHE HA H N N 288 PHE HB2 H N N 289 PHE HB3 H N N 290 PHE HD1 H N N 291 PHE HD2 H N N 292 PHE HE1 H N N 293 PHE HE2 H N N 294 PHE HZ H N N 295 PHE HXT H N N 296 PRO N N N N 297 PRO CA C N S 298 PRO C C N N 299 PRO O O N N 300 PRO CB C N N 301 PRO CG C N N 302 PRO CD C N N 303 PRO OXT O N N 304 PRO H H N N 305 PRO HA H N N 306 PRO HB2 H N N 307 PRO HB3 H N N 308 PRO HG2 H N N 309 PRO HG3 H N N 310 PRO HD2 H N N 311 PRO HD3 H N N 312 PRO HXT H N N 313 SER N N N N 314 SER CA C N S 315 SER C C N N 316 SER O O N N 317 SER CB C N N 318 SER OG O N N 319 SER OXT O N N 320 SER H H N N 321 SER H2 H N N 322 SER HA H N N 323 SER HB2 H N N 324 SER HB3 H N N 325 SER HG H N N 326 SER HXT H N N 327 THR N N N N 328 THR CA C N S 329 THR C C N N 330 THR O O N N 331 THR CB C N R 332 THR OG1 O N N 333 THR CG2 C N N 334 THR OXT O N N 335 THR H H N N 336 THR H2 H N N 337 THR HA H N N 338 THR HB H N N 339 THR HG1 H N N 340 THR HG21 H N N 341 THR HG22 H N N 342 THR HG23 H N N 343 THR HXT H N N 344 TRP N N N N 345 TRP CA C N S 346 TRP C C N N 347 TRP O O N N 348 TRP CB C N N 349 TRP CG C Y N 350 TRP CD1 C Y N 351 TRP CD2 C Y N 352 TRP NE1 N Y N 353 TRP CE2 C Y N 354 TRP CE3 C Y N 355 TRP CZ2 C Y N 356 TRP CZ3 C Y N 357 TRP CH2 C Y N 358 TRP OXT O N N 359 TRP H H N N 360 TRP H2 H N N 361 TRP HA H N N 362 TRP HB2 H N N 363 TRP HB3 H N N 364 TRP HD1 H N N 365 TRP HE1 H N N 366 TRP HE3 H N N 367 TRP HZ2 H N N 368 TRP HZ3 H N N 369 TRP HH2 H N N 370 TRP HXT H N N 371 TYR N N N N 372 TYR CA C N S 373 TYR C C N N 374 TYR O O N N 375 TYR CB C N N 376 TYR CG C Y N 377 TYR CD1 C Y N 378 TYR CD2 C Y N 379 TYR CE1 C Y N 380 TYR CE2 C Y N 381 TYR CZ C Y N 382 TYR OH O N N 383 TYR OXT O N N 384 TYR H H N N 385 TYR H2 H N N 386 TYR HA H N N 387 TYR HB2 H N N 388 TYR HB3 H N N 389 TYR HD1 H N N 390 TYR HD2 H N N 391 TYR HE1 H N N 392 TYR HE2 H N N 393 TYR HH H N N 394 TYR HXT H N N 395 VAL N N N N 396 VAL CA C N S 397 VAL C C N N 398 VAL O O N N 399 VAL CB C N N 400 VAL CG1 C N N 401 VAL CG2 C N N 402 VAL OXT O N N 403 VAL H H N N 404 VAL H2 H N N 405 VAL HA H N N 406 VAL HB H N N 407 VAL HG11 H N N 408 VAL HG12 H N N 409 VAL HG13 H N N 410 VAL HG21 H N N 411 VAL HG22 H N N 412 VAL HG23 H N N 413 VAL HXT H N N 414 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1WZ OAG CAT sing N N 1 1WZ CAB CAQ sing N N 2 1WZ CAT CAQ doub Y N 3 1WZ CAT CAP sing Y N 4 1WZ CAA CAP sing N N 5 1WZ CAQ CAK sing Y N 6 1WZ CAP CAJ doub Y N 7 1WZ CAK CAR doub Y N 8 1WZ CAJ CAR sing Y N 9 1WZ CAR CAH sing N N 10 1WZ CAH CAI doub N E 11 1WZ CAI CAS sing N N 12 1WZ CAS CAL doub Y N 13 1WZ CAS CAM sing Y N 14 1WZ CAL CAU sing Y N 15 1WZ CAM CAV doub Y N 16 1WZ OAE CAO doub N N 17 1WZ CAU CAO sing N N 18 1WZ CAU CAN doub Y N 19 1WZ CAV CAN sing Y N 20 1WZ CAV NAW sing N N 21 1WZ CAD NAW sing N N 22 1WZ CAO OAF sing N N 23 1WZ NAW CAC sing N N 24 1WZ CAA H1 sing N N 25 1WZ CAA H2 sing N N 26 1WZ CAA H3 sing N N 27 1WZ CAJ H4 sing N N 28 1WZ OAG H5 sing N N 29 1WZ CAB H6 sing N N 30 1WZ CAB H7 sing N N 31 1WZ CAB H8 sing N N 32 1WZ CAK H9 sing N N 33 1WZ CAH H10 sing N N 34 1WZ CAI H11 sing N N 35 1WZ CAM H12 sing N N 36 1WZ CAL H13 sing N N 37 1WZ OAF H14 sing N N 38 1WZ CAN H15 sing N N 39 1WZ CAD H16 sing N N 40 1WZ CAD H17 sing N N 41 1WZ CAD H18 sing N N 42 1WZ CAC H19 sing N N 43 1WZ CAC H20 sing N N 44 1WZ CAC H21 sing N N 45 ALA N CA sing N N 46 ALA N H sing N N 47 ALA N H2 sing N N 48 ALA CA C sing N N 49 ALA CA CB sing N N 50 ALA CA HA sing N N 51 ALA C O doub N N 52 ALA C OXT sing N N 53 ALA CB HB1 sing N N 54 ALA CB HB2 sing N N 55 ALA CB HB3 sing N N 56 ALA OXT HXT sing N N 57 ARG N CA sing N N 58 ARG N H sing N N 59 ARG N H2 sing N N 60 ARG CA C sing N N 61 ARG CA CB sing N N 62 ARG CA HA sing N N 63 ARG C O doub N N 64 ARG C OXT sing N N 65 ARG CB CG sing N N 66 ARG CB HB2 sing N N 67 ARG CB HB3 sing N N 68 ARG CG CD sing N N 69 ARG CG HG2 sing N N 70 ARG CG HG3 sing N N 71 ARG CD NE sing N N 72 ARG CD HD2 sing N N 73 ARG CD HD3 sing N N 74 ARG NE CZ sing N N 75 ARG NE HE sing N N 76 ARG CZ NH1 sing N N 77 ARG CZ NH2 doub N N 78 ARG NH1 HH11 sing N N 79 ARG NH1 HH12 sing N N 80 ARG NH2 HH21 sing N N 81 ARG NH2 HH22 sing N N 82 ARG OXT HXT sing N N 83 ASN N CA sing N N 84 ASN N H sing N N 85 ASN N H2 sing N N 86 ASN CA C sing N N 87 ASN CA CB sing N N 88 ASN CA HA sing N N 89 ASN C O doub N N 90 ASN C OXT sing N N 91 ASN CB CG sing N N 92 ASN CB HB2 sing N N 93 ASN CB HB3 sing N N 94 ASN CG OD1 doub N N 95 ASN CG ND2 sing N N 96 ASN ND2 HD21 sing N N 97 ASN ND2 HD22 sing N N 98 ASN OXT HXT sing N N 99 ASP N CA sing N N 100 ASP N H sing N N 101 ASP N H2 sing N N 102 ASP CA C sing N N 103 ASP CA CB sing N N 104 ASP CA HA sing N N 105 ASP C O doub N N 106 ASP C OXT sing N N 107 ASP CB CG sing N N 108 ASP CB HB2 sing N N 109 ASP CB HB3 sing N N 110 ASP CG OD1 doub N N 111 ASP CG OD2 sing N N 112 ASP OD2 HD2 sing N N 113 ASP OXT HXT sing N N 114 CYS N CA sing N N 115 CYS N H sing N N 116 CYS N H2 sing N N 117 CYS CA C sing N N 118 CYS CA CB sing N N 119 CYS CA HA sing N N 120 CYS C O doub N N 121 CYS C OXT sing N N 122 CYS CB SG sing N N 123 CYS CB HB2 sing N N 124 CYS CB HB3 sing N N 125 CYS SG HG sing N N 126 CYS OXT HXT sing N N 127 GLU N CA sing N N 128 GLU N H sing N N 129 GLU N H2 sing N N 130 GLU CA C sing N N 131 GLU CA CB sing N N 132 GLU CA HA sing N N 133 GLU C O doub N N 134 GLU C OXT sing N N 135 GLU CB CG sing N N 136 GLU CB HB2 sing N N 137 GLU CB HB3 sing N N 138 GLU CG CD sing N N 139 GLU CG HG2 sing N N 140 GLU CG HG3 sing N N 141 GLU CD OE1 doub N N 142 GLU CD OE2 sing N N 143 GLU OE2 HE2 sing N N 144 GLU OXT HXT sing N N 145 GLY N CA sing N N 146 GLY N H sing N N 147 GLY N H2 sing N N 148 GLY CA C sing N N 149 GLY CA HA2 sing N N 150 GLY CA HA3 sing N N 151 GLY C O doub N N 152 GLY C OXT sing N N 153 GLY OXT HXT sing N N 154 HIS N CA sing N N 155 HIS N H sing N N 156 HIS N H2 sing N N 157 HIS CA C sing N N 158 HIS CA CB sing N N 159 HIS CA HA sing N N 160 HIS C O doub N N 161 HIS C OXT sing N N 162 HIS CB CG sing N N 163 HIS CB HB2 sing N N 164 HIS CB HB3 sing N N 165 HIS CG ND1 sing Y N 166 HIS CG CD2 doub Y N 167 HIS ND1 CE1 doub Y N 168 HIS ND1 HD1 sing N N 169 HIS CD2 NE2 sing Y N 170 HIS CD2 HD2 sing N N 171 HIS CE1 NE2 sing Y N 172 HIS CE1 HE1 sing N N 173 HIS NE2 HE2 sing N N 174 HIS OXT HXT sing N N 175 HOH O H1 sing N N 176 HOH O H2 sing N N 177 ILE N CA sing N N 178 ILE N H sing N N 179 ILE N H2 sing N N 180 ILE CA C sing N N 181 ILE CA CB sing N N 182 ILE CA HA sing N N 183 ILE C O doub N N 184 ILE C OXT sing N N 185 ILE CB CG1 sing N N 186 ILE CB CG2 sing N N 187 ILE CB HB sing N N 188 ILE CG1 CD1 sing N N 189 ILE CG1 HG12 sing N N 190 ILE CG1 HG13 sing N N 191 ILE CG2 HG21 sing N N 192 ILE CG2 HG22 sing N N 193 ILE CG2 HG23 sing N N 194 ILE CD1 HD11 sing N N 195 ILE CD1 HD12 sing N N 196 ILE CD1 HD13 sing N N 197 ILE OXT HXT sing N N 198 LEU N CA sing N N 199 LEU N H sing N N 200 LEU N H2 sing N N 201 LEU CA C sing N N 202 LEU CA CB sing N N 203 LEU CA HA sing N N 204 LEU C O doub N N 205 LEU C OXT sing N N 206 LEU CB CG sing N N 207 LEU CB HB2 sing N N 208 LEU CB HB3 sing N N 209 LEU CG CD1 sing N N 210 LEU CG CD2 sing N N 211 LEU CG HG sing N N 212 LEU CD1 HD11 sing N N 213 LEU CD1 HD12 sing N N 214 LEU CD1 HD13 sing N N 215 LEU CD2 HD21 sing N N 216 LEU CD2 HD22 sing N N 217 LEU CD2 HD23 sing N N 218 LEU OXT HXT sing N N 219 LYS N CA sing N N 220 LYS N H sing N N 221 LYS N H2 sing N N 222 LYS CA C sing N N 223 LYS CA CB sing N N 224 LYS CA HA sing N N 225 LYS C O doub N N 226 LYS C OXT sing N N 227 LYS CB CG sing N N 228 LYS CB HB2 sing N N 229 LYS CB HB3 sing N N 230 LYS CG CD sing N N 231 LYS CG HG2 sing N N 232 LYS CG HG3 sing N N 233 LYS CD CE sing N N 234 LYS CD HD2 sing N N 235 LYS CD HD3 sing N N 236 LYS CE NZ sing N N 237 LYS CE HE2 sing N N 238 LYS CE HE3 sing N N 239 LYS NZ HZ1 sing N N 240 LYS NZ HZ2 sing N N 241 LYS NZ HZ3 sing N N 242 LYS OXT HXT sing N N 243 MET N CA sing N N 244 MET N H sing N N 245 MET N H2 sing N N 246 MET CA C sing N N 247 MET CA CB sing N N 248 MET CA HA sing N N 249 MET C O doub N N 250 MET C OXT sing N N 251 MET CB CG sing N N 252 MET CB HB2 sing N N 253 MET CB HB3 sing N N 254 MET CG SD sing N N 255 MET CG HG2 sing N N 256 MET CG HG3 sing N N 257 MET SD CE sing N N 258 MET CE HE1 sing N N 259 MET CE HE2 sing N N 260 MET CE HE3 sing N N 261 MET OXT HXT sing N N 262 PHE N CA sing N N 263 PHE N H sing N N 264 PHE N H2 sing N N 265 PHE CA C sing N N 266 PHE CA CB sing N N 267 PHE CA HA sing N N 268 PHE C O doub N N 269 PHE C OXT sing N N 270 PHE CB CG sing N N 271 PHE CB HB2 sing N N 272 PHE CB HB3 sing N N 273 PHE CG CD1 doub Y N 274 PHE CG CD2 sing Y N 275 PHE CD1 CE1 sing Y N 276 PHE CD1 HD1 sing N N 277 PHE CD2 CE2 doub Y N 278 PHE CD2 HD2 sing N N 279 PHE CE1 CZ doub Y N 280 PHE CE1 HE1 sing N N 281 PHE CE2 CZ sing Y N 282 PHE CE2 HE2 sing N N 283 PHE CZ HZ sing N N 284 PHE OXT HXT sing N N 285 PRO N CA sing N N 286 PRO N CD sing N N 287 PRO N H sing N N 288 PRO CA C sing N N 289 PRO CA CB sing N N 290 PRO CA HA sing N N 291 PRO C O doub N N 292 PRO C OXT sing N N 293 PRO CB CG sing N N 294 PRO CB HB2 sing N N 295 PRO CB HB3 sing N N 296 PRO CG CD sing N N 297 PRO CG HG2 sing N N 298 PRO CG HG3 sing N N 299 PRO CD HD2 sing N N 300 PRO CD HD3 sing N N 301 PRO OXT HXT sing N N 302 SER N CA sing N N 303 SER N H sing N N 304 SER N H2 sing N N 305 SER CA C sing N N 306 SER CA CB sing N N 307 SER CA HA sing N N 308 SER C O doub N N 309 SER C OXT sing N N 310 SER CB OG sing N N 311 SER CB HB2 sing N N 312 SER CB HB3 sing N N 313 SER OG HG sing N N 314 SER OXT HXT sing N N 315 THR N CA sing N N 316 THR N H sing N N 317 THR N H2 sing N N 318 THR CA C sing N N 319 THR CA CB sing N N 320 THR CA HA sing N N 321 THR C O doub N N 322 THR C OXT sing N N 323 THR CB OG1 sing N N 324 THR CB CG2 sing N N 325 THR CB HB sing N N 326 THR OG1 HG1 sing N N 327 THR CG2 HG21 sing N N 328 THR CG2 HG22 sing N N 329 THR CG2 HG23 sing N N 330 THR OXT HXT sing N N 331 TRP N CA sing N N 332 TRP N H sing N N 333 TRP N H2 sing N N 334 TRP CA C sing N N 335 TRP CA CB sing N N 336 TRP CA HA sing N N 337 TRP C O doub N N 338 TRP C OXT sing N N 339 TRP CB CG sing N N 340 TRP CB HB2 sing N N 341 TRP CB HB3 sing N N 342 TRP CG CD1 doub Y N 343 TRP CG CD2 sing Y N 344 TRP CD1 NE1 sing Y N 345 TRP CD1 HD1 sing N N 346 TRP CD2 CE2 doub Y N 347 TRP CD2 CE3 sing Y N 348 TRP NE1 CE2 sing Y N 349 TRP NE1 HE1 sing N N 350 TRP CE2 CZ2 sing Y N 351 TRP CE3 CZ3 doub Y N 352 TRP CE3 HE3 sing N N 353 TRP CZ2 CH2 doub Y N 354 TRP CZ2 HZ2 sing N N 355 TRP CZ3 CH2 sing Y N 356 TRP CZ3 HZ3 sing N N 357 TRP CH2 HH2 sing N N 358 TRP OXT HXT sing N N 359 TYR N CA sing N N 360 TYR N H sing N N 361 TYR N H2 sing N N 362 TYR CA C sing N N 363 TYR CA CB sing N N 364 TYR CA HA sing N N 365 TYR C O doub N N 366 TYR C OXT sing N N 367 TYR CB CG sing N N 368 TYR CB HB2 sing N N 369 TYR CB HB3 sing N N 370 TYR CG CD1 doub Y N 371 TYR CG CD2 sing Y N 372 TYR CD1 CE1 sing Y N 373 TYR CD1 HD1 sing N N 374 TYR CD2 CE2 doub Y N 375 TYR CD2 HD2 sing N N 376 TYR CE1 CZ doub Y N 377 TYR CE1 HE1 sing N N 378 TYR CE2 CZ sing Y N 379 TYR CE2 HE2 sing N N 380 TYR CZ OH sing N N 381 TYR OH HH sing N N 382 TYR OXT HXT sing N N 383 VAL N CA sing N N 384 VAL N H sing N N 385 VAL N H2 sing N N 386 VAL CA C sing N N 387 VAL CA CB sing N N 388 VAL CA HA sing N N 389 VAL C O doub N N 390 VAL C OXT sing N N 391 VAL CB CG1 sing N N 392 VAL CB CG2 sing N N 393 VAL CB HB sing N N 394 VAL CG1 HG11 sing N N 395 VAL CG1 HG12 sing N N 396 VAL CG1 HG13 sing N N 397 VAL CG2 HG21 sing N N 398 VAL CG2 HG22 sing N N 399 VAL CG2 HG23 sing N N 400 VAL OXT HXT sing N N 401 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 100 mM KCl 1 'Potassium Chloride' 1 8.66 mM K2HPO4 2 'Potassium Phosphate' 1 1.34 mM KH2PO4 3 'Potassium Phosphate' 1 1 mM C10H16N2O8 4 EDTA 1 0.01 '% w/v' C14H28O6 5 'beta-octyl glucoside (BOG)' 1 1.25 '% v/v' C2H6OS 6 DMSO # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.056136 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 6.8 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4536 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.19.2_4158: 'IMAGE ACQUISITION' ? 3 ? ? 1 Leginon 3.6 MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 3.1 # _em_specimen.concentration 0.41 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM142196 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' AG067594 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 1WZ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 1WZ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8VE1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_