data_8VE7 # _entry.id 8VE7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VE7 pdb_00008ve7 10.2210/pdb8ve7/pdb WWPDB D_1000279999 ? ? EMDB EMD-43167 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-05 2 'Structure model' 1 1 2024-07-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VE7 _pdbx_database_status.recvd_initial_deposition_date 2023-12-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8VDZ unspecified EMDB . EMD-43157 'consensus EM volume' EMDB . EMD-43158 'consensus EM volume' EMDB . EMD-43159 'consensus EM volume' EMDB 'A DARPin displayed on a designed tetrahedral protein scaffold' EMD-43167 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email gonens@uci.edu _pdbx_contact_author.name_first Shane _pdbx_contact_author.name_last Gonen _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4829-3151 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Suder, D.S.' 1 ? 'Gonen, S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Mitigating the Blurring Effect of CryoEM Averaging on a Flexible and Highly Symmetric Protein Complex through Sub-Particle Reconstruction. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms25115665 _citation.pdbx_database_id_PubMed 38891853 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suder, D.S.' 1 ? primary 'Gonen, S.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'DARPin protein scaffold' _entity.formula_weight 32208.723 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'with a helical connection to a chain of a designed protein scaffold' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKS FVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIELGKKLLEAARAGQDDEVRI LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ ; _entity_poly.pdbx_seq_one_letter_code_can ;KDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKS FVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIELGKKLLEAARAGQDDEVRI LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ASP n 1 3 SER n 1 4 PRO n 1 5 ILE n 1 6 ILE n 1 7 GLU n 1 8 ALA n 1 9 ASN n 1 10 GLY n 1 11 THR n 1 12 LEU n 1 13 ASP n 1 14 GLU n 1 15 LEU n 1 16 THR n 1 17 SER n 1 18 PHE n 1 19 ILE n 1 20 GLY n 1 21 GLU n 1 22 ALA n 1 23 LYS n 1 24 HIS n 1 25 TYR n 1 26 VAL n 1 27 ASP n 1 28 GLU n 1 29 GLU n 1 30 MET n 1 31 LYS n 1 32 GLY n 1 33 ILE n 1 34 LEU n 1 35 GLU n 1 36 GLU n 1 37 ILE n 1 38 GLN n 1 39 ASN n 1 40 ASP n 1 41 ILE n 1 42 TYR n 1 43 LYS n 1 44 ILE n 1 45 MET n 1 46 GLY n 1 47 GLU n 1 48 ILE n 1 49 GLY n 1 50 SER n 1 51 LYS n 1 52 GLY n 1 53 LYS n 1 54 ILE n 1 55 GLU n 1 56 GLY n 1 57 ILE n 1 58 SER n 1 59 GLU n 1 60 GLU n 1 61 ARG n 1 62 ILE n 1 63 ALA n 1 64 TRP n 1 65 LEU n 1 66 LEU n 1 67 LYS n 1 68 LEU n 1 69 ILE n 1 70 LEU n 1 71 ARG n 1 72 TYR n 1 73 MET n 1 74 GLU n 1 75 MET n 1 76 VAL n 1 77 ASN n 1 78 LEU n 1 79 LYS n 1 80 SER n 1 81 PHE n 1 82 VAL n 1 83 LEU n 1 84 PRO n 1 85 GLY n 1 86 GLY n 1 87 THR n 1 88 LEU n 1 89 GLU n 1 90 SER n 1 91 ALA n 1 92 LYS n 1 93 LEU n 1 94 ASP n 1 95 VAL n 1 96 CYS n 1 97 ARG n 1 98 THR n 1 99 ILE n 1 100 ALA n 1 101 ARG n 1 102 ARG n 1 103 ALA n 1 104 LEU n 1 105 ARG n 1 106 LYS n 1 107 VAL n 1 108 LEU n 1 109 THR n 1 110 VAL n 1 111 THR n 1 112 ARG n 1 113 GLU n 1 114 PHE n 1 115 GLY n 1 116 ILE n 1 117 GLY n 1 118 ALA n 1 119 GLU n 1 120 ALA n 1 121 ALA n 1 122 ALA n 1 123 TYR n 1 124 LEU n 1 125 LEU n 1 126 ALA n 1 127 LEU n 1 128 SER n 1 129 ASP n 1 130 LEU n 1 131 LEU n 1 132 PHE n 1 133 LEU n 1 134 LEU n 1 135 ALA n 1 136 ARG n 1 137 VAL n 1 138 ILE n 1 139 GLU n 1 140 ILE n 1 141 GLU n 1 142 LEU n 1 143 GLY n 1 144 LYS n 1 145 LYS n 1 146 LEU n 1 147 LEU n 1 148 GLU n 1 149 ALA n 1 150 ALA n 1 151 ARG n 1 152 ALA n 1 153 GLY n 1 154 GLN n 1 155 ASP n 1 156 ASP n 1 157 GLU n 1 158 VAL n 1 159 ARG n 1 160 ILE n 1 161 LEU n 1 162 MET n 1 163 ALA n 1 164 ASN n 1 165 GLY n 1 166 ALA n 1 167 ASP n 1 168 VAL n 1 169 ASN n 1 170 ALA n 1 171 HIS n 1 172 ASP n 1 173 ASP n 1 174 GLN n 1 175 GLY n 1 176 SER n 1 177 THR n 1 178 PRO n 1 179 LEU n 1 180 HIS n 1 181 LEU n 1 182 ALA n 1 183 ALA n 1 184 TRP n 1 185 ILE n 1 186 GLY n 1 187 HIS n 1 188 PRO n 1 189 GLU n 1 190 ILE n 1 191 VAL n 1 192 GLU n 1 193 VAL n 1 194 LEU n 1 195 LEU n 1 196 LYS n 1 197 HIS n 1 198 GLY n 1 199 ALA n 1 200 ASP n 1 201 VAL n 1 202 ASN n 1 203 ALA n 1 204 ARG n 1 205 ASP n 1 206 THR n 1 207 ASP n 1 208 GLY n 1 209 TRP n 1 210 THR n 1 211 PRO n 1 212 LEU n 1 213 HIS n 1 214 LEU n 1 215 ALA n 1 216 ALA n 1 217 ASP n 1 218 ASN n 1 219 GLY n 1 220 HIS n 1 221 LEU n 1 222 GLU n 1 223 ILE n 1 224 VAL n 1 225 GLU n 1 226 VAL n 1 227 LEU n 1 228 LEU n 1 229 LYS n 1 230 TYR n 1 231 GLY n 1 232 ALA n 1 233 ASP n 1 234 VAL n 1 235 ASN n 1 236 ALA n 1 237 GLN n 1 238 ASP n 1 239 ALA n 1 240 TYR n 1 241 GLY n 1 242 LEU n 1 243 THR n 1 244 PRO n 1 245 LEU n 1 246 HIS n 1 247 LEU n 1 248 ALA n 1 249 ALA n 1 250 ASP n 1 251 ARG n 1 252 GLY n 1 253 HIS n 1 254 LEU n 1 255 GLU n 1 256 ILE n 1 257 VAL n 1 258 GLU n 1 259 VAL n 1 260 LEU n 1 261 LEU n 1 262 LYS n 1 263 HIS n 1 264 GLY n 1 265 ALA n 1 266 ASP n 1 267 VAL n 1 268 ASN n 1 269 ALA n 1 270 GLN n 1 271 ASP n 1 272 LYS n 1 273 PHE n 1 274 GLY n 1 275 LYS n 1 276 THR n 1 277 ALA n 1 278 PHE n 1 279 ASP n 1 280 ILE n 1 281 SER n 1 282 ILE n 1 283 ASP n 1 284 ASN n 1 285 GLY n 1 286 ASN n 1 287 GLU n 1 288 ASP n 1 289 LEU n 1 290 ALA n 1 291 GLU n 1 292 ILE n 1 293 LEU n 1 294 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 294 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 23 23 LYS LYS A . n A 1 2 ASP 2 24 24 ASP ASP A . n A 1 3 SER 3 25 25 SER SER A . n A 1 4 PRO 4 26 26 PRO PRO A . n A 1 5 ILE 5 27 27 ILE ILE A . n A 1 6 ILE 6 28 28 ILE ILE A . n A 1 7 GLU 7 29 29 GLU GLU A . n A 1 8 ALA 8 30 30 ALA ALA A . n A 1 9 ASN 9 31 31 ASN ASN A . n A 1 10 GLY 10 32 32 GLY GLY A . n A 1 11 THR 11 33 33 THR THR A . n A 1 12 LEU 12 34 34 LEU LEU A . n A 1 13 ASP 13 35 35 ASP ASP A . n A 1 14 GLU 14 36 36 GLU GLU A . n A 1 15 LEU 15 37 37 LEU LEU A . n A 1 16 THR 16 38 38 THR THR A . n A 1 17 SER 17 39 39 SER SER A . n A 1 18 PHE 18 40 40 PHE PHE A . n A 1 19 ILE 19 41 41 ILE ILE A . n A 1 20 GLY 20 42 42 GLY GLY A . n A 1 21 GLU 21 43 43 GLU GLU A . n A 1 22 ALA 22 44 44 ALA ALA A . n A 1 23 LYS 23 45 45 LYS LYS A . n A 1 24 HIS 24 46 46 HIS HIS A . n A 1 25 TYR 25 47 47 TYR TYR A . n A 1 26 VAL 26 48 48 VAL VAL A . n A 1 27 ASP 27 49 49 ASP ASP A . n A 1 28 GLU 28 50 50 GLU GLU A . n A 1 29 GLU 29 51 51 GLU GLU A . n A 1 30 MET 30 52 52 MET MET A . n A 1 31 LYS 31 53 53 LYS LYS A . n A 1 32 GLY 32 54 54 GLY GLY A . n A 1 33 ILE 33 55 55 ILE ILE A . n A 1 34 LEU 34 56 56 LEU LEU A . n A 1 35 GLU 35 57 57 GLU GLU A . n A 1 36 GLU 36 58 58 GLU GLU A . n A 1 37 ILE 37 59 59 ILE ILE A . n A 1 38 GLN 38 60 60 GLN GLN A . n A 1 39 ASN 39 61 61 ASN ASN A . n A 1 40 ASP 40 62 62 ASP ASP A . n A 1 41 ILE 41 63 63 ILE ILE A . n A 1 42 TYR 42 64 64 TYR TYR A . n A 1 43 LYS 43 65 65 LYS LYS A . n A 1 44 ILE 44 66 66 ILE ILE A . n A 1 45 MET 45 67 67 MET MET A . n A 1 46 GLY 46 68 68 GLY GLY A . n A 1 47 GLU 47 69 69 GLU GLU A . n A 1 48 ILE 48 70 70 ILE ILE A . n A 1 49 GLY 49 71 71 GLY GLY A . n A 1 50 SER 50 72 72 SER SER A . n A 1 51 LYS 51 73 73 LYS LYS A . n A 1 52 GLY 52 74 74 GLY GLY A . n A 1 53 LYS 53 75 75 LYS LYS A . n A 1 54 ILE 54 76 76 ILE ILE A . n A 1 55 GLU 55 77 77 GLU GLU A . n A 1 56 GLY 56 78 78 GLY GLY A . n A 1 57 ILE 57 79 79 ILE ILE A . n A 1 58 SER 58 80 80 SER SER A . n A 1 59 GLU 59 81 81 GLU GLU A . n A 1 60 GLU 60 82 82 GLU GLU A . n A 1 61 ARG 61 83 83 ARG ARG A . n A 1 62 ILE 62 84 84 ILE ILE A . n A 1 63 ALA 63 85 85 ALA ALA A . n A 1 64 TRP 64 86 86 TRP TRP A . n A 1 65 LEU 65 87 87 LEU LEU A . n A 1 66 LEU 66 88 88 LEU LEU A . n A 1 67 LYS 67 89 89 LYS LYS A . n A 1 68 LEU 68 90 90 LEU LEU A . n A 1 69 ILE 69 91 91 ILE ILE A . n A 1 70 LEU 70 92 92 LEU LEU A . n A 1 71 ARG 71 93 93 ARG ARG A . n A 1 72 TYR 72 94 94 TYR TYR A . n A 1 73 MET 73 95 95 MET MET A . n A 1 74 GLU 74 96 96 GLU GLU A . n A 1 75 MET 75 97 97 MET MET A . n A 1 76 VAL 76 98 98 VAL VAL A . n A 1 77 ASN 77 99 99 ASN ASN A . n A 1 78 LEU 78 100 100 LEU LEU A . n A 1 79 LYS 79 101 101 LYS LYS A . n A 1 80 SER 80 102 102 SER SER A . n A 1 81 PHE 81 103 103 PHE PHE A . n A 1 82 VAL 82 104 104 VAL VAL A . n A 1 83 LEU 83 105 105 LEU LEU A . n A 1 84 PRO 84 106 106 PRO PRO A . n A 1 85 GLY 85 107 107 GLY GLY A . n A 1 86 GLY 86 108 108 GLY GLY A . n A 1 87 THR 87 109 109 THR THR A . n A 1 88 LEU 88 110 110 LEU LEU A . n A 1 89 GLU 89 111 111 GLU GLU A . n A 1 90 SER 90 112 112 SER SER A . n A 1 91 ALA 91 113 113 ALA ALA A . n A 1 92 LYS 92 114 114 LYS LYS A . n A 1 93 LEU 93 115 115 LEU LEU A . n A 1 94 ASP 94 116 116 ASP ASP A . n A 1 95 VAL 95 117 117 VAL VAL A . n A 1 96 CYS 96 118 118 CYS CYS A . n A 1 97 ARG 97 119 119 ARG ARG A . n A 1 98 THR 98 120 120 THR THR A . n A 1 99 ILE 99 121 121 ILE ILE A . n A 1 100 ALA 100 122 122 ALA ALA A . n A 1 101 ARG 101 123 123 ARG ARG A . n A 1 102 ARG 102 124 124 ARG ARG A . n A 1 103 ALA 103 125 125 ALA ALA A . n A 1 104 LEU 104 126 126 LEU LEU A . n A 1 105 ARG 105 127 127 ARG ARG A . n A 1 106 LYS 106 128 128 LYS LYS A . n A 1 107 VAL 107 129 129 VAL VAL A . n A 1 108 LEU 108 130 130 LEU LEU A . n A 1 109 THR 109 131 131 THR THR A . n A 1 110 VAL 110 132 132 VAL VAL A . n A 1 111 THR 111 133 133 THR THR A . n A 1 112 ARG 112 134 134 ARG ARG A . n A 1 113 GLU 113 135 135 GLU GLU A . n A 1 114 PHE 114 136 136 PHE PHE A . n A 1 115 GLY 115 137 137 GLY GLY A . n A 1 116 ILE 116 138 138 ILE ILE A . n A 1 117 GLY 117 139 139 GLY GLY A . n A 1 118 ALA 118 140 140 ALA ALA A . n A 1 119 GLU 119 141 141 GLU GLU A . n A 1 120 ALA 120 142 142 ALA ALA A . n A 1 121 ALA 121 143 143 ALA ALA A . n A 1 122 ALA 122 144 144 ALA ALA A . n A 1 123 TYR 123 145 145 TYR TYR A . n A 1 124 LEU 124 146 146 LEU LEU A . n A 1 125 LEU 125 147 147 LEU LEU A . n A 1 126 ALA 126 148 148 ALA ALA A . n A 1 127 LEU 127 149 149 LEU LEU A . n A 1 128 SER 128 150 150 SER SER A . n A 1 129 ASP 129 151 151 ASP ASP A . n A 1 130 LEU 130 152 152 LEU LEU A . n A 1 131 LEU 131 153 153 LEU LEU A . n A 1 132 PHE 132 154 154 PHE PHE A . n A 1 133 LEU 133 155 155 LEU LEU A . n A 1 134 LEU 134 156 156 LEU LEU A . n A 1 135 ALA 135 157 157 ALA ALA A . n A 1 136 ARG 136 158 158 ARG ARG A . n A 1 137 VAL 137 159 159 VAL VAL A . n A 1 138 ILE 138 160 160 ILE ILE A . n A 1 139 GLU 139 161 161 GLU GLU A . n A 1 140 ILE 140 162 162 ILE ILE A . n A 1 141 GLU 141 163 163 GLU GLU A . n A 1 142 LEU 142 164 164 LEU LEU A . n A 1 143 GLY 143 165 165 GLY GLY A . n A 1 144 LYS 144 166 166 LYS LYS A . n A 1 145 LYS 145 167 167 LYS LYS A . n A 1 146 LEU 146 168 168 LEU LEU A . n A 1 147 LEU 147 169 169 LEU LEU A . n A 1 148 GLU 148 170 170 GLU GLU A . n A 1 149 ALA 149 171 171 ALA ALA A . n A 1 150 ALA 150 172 172 ALA ALA A . n A 1 151 ARG 151 173 173 ARG ARG A . n A 1 152 ALA 152 174 174 ALA ALA A . n A 1 153 GLY 153 175 175 GLY GLY A . n A 1 154 GLN 154 176 176 GLN GLN A . n A 1 155 ASP 155 177 177 ASP ASP A . n A 1 156 ASP 156 178 178 ASP ASP A . n A 1 157 GLU 157 179 179 GLU GLU A . n A 1 158 VAL 158 180 180 VAL VAL A . n A 1 159 ARG 159 181 181 ARG ARG A . n A 1 160 ILE 160 182 182 ILE ILE A . n A 1 161 LEU 161 183 183 LEU LEU A . n A 1 162 MET 162 184 184 MET MET A . n A 1 163 ALA 163 185 185 ALA ALA A . n A 1 164 ASN 164 186 186 ASN ASN A . n A 1 165 GLY 165 187 187 GLY GLY A . n A 1 166 ALA 166 188 188 ALA ALA A . n A 1 167 ASP 167 189 189 ASP ASP A . n A 1 168 VAL 168 190 190 VAL VAL A . n A 1 169 ASN 169 191 191 ASN ASN A . n A 1 170 ALA 170 192 192 ALA ALA A . n A 1 171 HIS 171 193 193 HIS HIS A . n A 1 172 ASP 172 194 194 ASP ASP A . n A 1 173 ASP 173 195 195 ASP ASP A . n A 1 174 GLN 174 196 196 GLN GLN A . n A 1 175 GLY 175 197 197 GLY GLY A . n A 1 176 SER 176 198 198 SER SER A . n A 1 177 THR 177 199 199 THR THR A . n A 1 178 PRO 178 200 200 PRO PRO A . n A 1 179 LEU 179 201 201 LEU LEU A . n A 1 180 HIS 180 202 202 HIS HIS A . n A 1 181 LEU 181 203 203 LEU LEU A . n A 1 182 ALA 182 204 204 ALA ALA A . n A 1 183 ALA 183 205 205 ALA ALA A . n A 1 184 TRP 184 206 206 TRP TRP A . n A 1 185 ILE 185 207 207 ILE ILE A . n A 1 186 GLY 186 208 208 GLY GLY A . n A 1 187 HIS 187 209 209 HIS HIS A . n A 1 188 PRO 188 210 210 PRO PRO A . n A 1 189 GLU 189 211 211 GLU GLU A . n A 1 190 ILE 190 212 212 ILE ILE A . n A 1 191 VAL 191 213 213 VAL VAL A . n A 1 192 GLU 192 214 214 GLU GLU A . n A 1 193 VAL 193 215 215 VAL VAL A . n A 1 194 LEU 194 216 216 LEU LEU A . n A 1 195 LEU 195 217 217 LEU LEU A . n A 1 196 LYS 196 218 218 LYS LYS A . n A 1 197 HIS 197 219 219 HIS HIS A . n A 1 198 GLY 198 220 220 GLY GLY A . n A 1 199 ALA 199 221 221 ALA ALA A . n A 1 200 ASP 200 222 222 ASP ASP A . n A 1 201 VAL 201 223 223 VAL VAL A . n A 1 202 ASN 202 224 224 ASN ASN A . n A 1 203 ALA 203 225 225 ALA ALA A . n A 1 204 ARG 204 226 226 ARG ARG A . n A 1 205 ASP 205 227 227 ASP ASP A . n A 1 206 THR 206 228 228 THR THR A . n A 1 207 ASP 207 229 229 ASP ASP A . n A 1 208 GLY 208 230 230 GLY GLY A . n A 1 209 TRP 209 231 231 TRP TRP A . n A 1 210 THR 210 232 232 THR THR A . n A 1 211 PRO 211 233 233 PRO PRO A . n A 1 212 LEU 212 234 234 LEU LEU A . n A 1 213 HIS 213 235 235 HIS HIS A . n A 1 214 LEU 214 236 236 LEU LEU A . n A 1 215 ALA 215 237 237 ALA ALA A . n A 1 216 ALA 216 238 238 ALA ALA A . n A 1 217 ASP 217 239 239 ASP ASP A . n A 1 218 ASN 218 240 240 ASN ASN A . n A 1 219 GLY 219 241 241 GLY GLY A . n A 1 220 HIS 220 242 242 HIS HIS A . n A 1 221 LEU 221 243 243 LEU LEU A . n A 1 222 GLU 222 244 244 GLU GLU A . n A 1 223 ILE 223 245 245 ILE ILE A . n A 1 224 VAL 224 246 246 VAL VAL A . n A 1 225 GLU 225 247 247 GLU GLU A . n A 1 226 VAL 226 248 248 VAL VAL A . n A 1 227 LEU 227 249 249 LEU LEU A . n A 1 228 LEU 228 250 250 LEU LEU A . n A 1 229 LYS 229 251 251 LYS LYS A . n A 1 230 TYR 230 252 252 TYR TYR A . n A 1 231 GLY 231 253 253 GLY GLY A . n A 1 232 ALA 232 254 254 ALA ALA A . n A 1 233 ASP 233 255 255 ASP ASP A . n A 1 234 VAL 234 256 256 VAL VAL A . n A 1 235 ASN 235 257 257 ASN ASN A . n A 1 236 ALA 236 258 258 ALA ALA A . n A 1 237 GLN 237 259 259 GLN GLN A . n A 1 238 ASP 238 260 260 ASP ASP A . n A 1 239 ALA 239 261 261 ALA ALA A . n A 1 240 TYR 240 262 262 TYR TYR A . n A 1 241 GLY 241 263 263 GLY GLY A . n A 1 242 LEU 242 264 264 LEU LEU A . n A 1 243 THR 243 265 265 THR THR A . n A 1 244 PRO 244 266 266 PRO PRO A . n A 1 245 LEU 245 267 267 LEU LEU A . n A 1 246 HIS 246 268 268 HIS HIS A . n A 1 247 LEU 247 269 269 LEU LEU A . n A 1 248 ALA 248 270 270 ALA ALA A . n A 1 249 ALA 249 271 271 ALA ALA A . n A 1 250 ASP 250 272 272 ASP ASP A . n A 1 251 ARG 251 273 273 ARG ARG A . n A 1 252 GLY 252 274 274 GLY GLY A . n A 1 253 HIS 253 275 275 HIS HIS A . n A 1 254 LEU 254 276 276 LEU LEU A . n A 1 255 GLU 255 277 277 GLU GLU A . n A 1 256 ILE 256 278 278 ILE ILE A . n A 1 257 VAL 257 279 279 VAL VAL A . n A 1 258 GLU 258 280 280 GLU GLU A . n A 1 259 VAL 259 281 281 VAL VAL A . n A 1 260 LEU 260 282 282 LEU LEU A . n A 1 261 LEU 261 283 283 LEU LEU A . n A 1 262 LYS 262 284 284 LYS LYS A . n A 1 263 HIS 263 285 285 HIS HIS A . n A 1 264 GLY 264 286 286 GLY GLY A . n A 1 265 ALA 265 287 287 ALA ALA A . n A 1 266 ASP 266 288 288 ASP ASP A . n A 1 267 VAL 267 289 289 VAL VAL A . n A 1 268 ASN 268 290 290 ASN ASN A . n A 1 269 ALA 269 291 291 ALA ALA A . n A 1 270 GLN 270 292 292 GLN GLN A . n A 1 271 ASP 271 293 293 ASP ASP A . n A 1 272 LYS 272 294 294 LYS LYS A . n A 1 273 PHE 273 295 295 PHE PHE A . n A 1 274 GLY 274 296 296 GLY GLY A . n A 1 275 LYS 275 297 297 LYS LYS A . n A 1 276 THR 276 298 298 THR THR A . n A 1 277 ALA 277 299 299 ALA ALA A . n A 1 278 PHE 278 300 300 PHE PHE A . n A 1 279 ASP 279 301 301 ASP ASP A . n A 1 280 ILE 280 302 302 ILE ILE A . n A 1 281 SER 281 303 303 SER SER A . n A 1 282 ILE 282 304 304 ILE ILE A . n A 1 283 ASP 283 305 305 ASP ASP A . n A 1 284 ASN 284 306 306 ASN ASN A . n A 1 285 GLY 285 307 307 GLY GLY A . n A 1 286 ASN 286 308 308 ASN ASN A . n A 1 287 GLU 287 309 309 GLU GLU A . n A 1 288 ASP 288 310 310 ASP ASP A . n A 1 289 LEU 289 311 311 LEU LEU A . n A 1 290 ALA 290 312 312 ALA ALA A . n A 1 291 GLU 291 313 313 GLU GLU A . n A 1 292 ILE 292 314 314 ILE ILE A . n A 1 293 LEU 293 315 315 LEU LEU A . n A 1 294 GLN 294 316 316 GLN GLN A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8VE7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VE7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8VE7 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 4489 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.503 ? 6049 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 3.699 ? 606 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.037 ? 715 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 768 ? f_plane_restr ? ? # _struct.entry_id 8VE7 _struct.title 'A DARPin displayed on a designed tetrahedral protein scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VE7 _struct_keywords.text 'scaffold, tetrahedral, darpin, symmetrical, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8VE7 _struct_ref.pdbx_db_accession 8VE7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8VE7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 294 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8VE7 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 316 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 316 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 2 ? LYS A 23 ? ASP A 24 LYS A 45 1 ? 22 HELX_P HELX_P2 AA2 ASP A 27 ? SER A 50 ? ASP A 49 SER A 72 1 ? 24 HELX_P HELX_P3 AA3 SER A 58 ? MET A 75 ? SER A 80 MET A 97 1 ? 18 HELX_P HELX_P4 AA4 THR A 87 ? GLY A 115 ? THR A 109 GLY A 137 1 ? 29 HELX_P HELX_P5 AA5 GLY A 117 ? GLY A 153 ? GLY A 139 GLY A 175 1 ? 37 HELX_P HELX_P6 AA6 GLN A 154 ? ASN A 164 ? GLN A 176 ASN A 186 1 ? 11 HELX_P HELX_P7 AA7 THR A 177 ? GLY A 186 ? THR A 199 GLY A 208 1 ? 10 HELX_P HELX_P8 AA8 HIS A 187 ? HIS A 197 ? HIS A 209 HIS A 219 1 ? 11 HELX_P HELX_P9 AA9 THR A 210 ? ASN A 218 ? THR A 232 ASN A 240 1 ? 9 HELX_P HELX_P10 AB1 HIS A 220 ? TYR A 230 ? HIS A 242 TYR A 252 1 ? 11 HELX_P HELX_P11 AB2 THR A 243 ? ARG A 251 ? THR A 265 ARG A 273 1 ? 9 HELX_P HELX_P12 AB3 HIS A 253 ? HIS A 263 ? HIS A 275 HIS A 285 1 ? 11 HELX_P HELX_P13 AB4 THR A 276 ? GLY A 285 ? THR A 298 GLY A 307 1 ? 10 HELX_P HELX_P14 AB5 ASN A 286 ? GLN A 294 ? ASN A 308 GLN A 316 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 A THR 38 ? ? OE1 A GLN 60 ? ? 2.14 2 1 OG1 A THR 232 ? ? ND1 A HIS 235 ? ? 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 45 ? ? -68.37 4.48 2 1 ASP A 49 ? ? -77.72 -167.51 3 1 HIS A 219 ? ? -97.75 33.24 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 176 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 177 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.04 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8VE7 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8VE7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'resolution ranges drastically across the map, though.' _em_3d_reconstruction.resolution 4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 287323 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'DARPin with a helical connection to a chain of a designed protein scaffold' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8VE7 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8VE7 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8VE7 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8VE7 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2023-12-18 _em_admin.deposition_site RCSB _em_admin.entry_id 8VE7 _em_admin.last_update 2024-07-03 _em_admin.map_release_date 2024-06-05 _em_admin.title 'A DARPin displayed on a designed tetrahedral protein scaffold' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 30 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R35-GM142797 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8VE7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_