data_8VGP # _entry.id 8VGP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VGP pdb_00008vgp 10.2210/pdb8vgp/pdb WWPDB D_1000280186 ? ? EMDB EMD-43220 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VGP _pdbx_database_status.recvd_initial_deposition_date 2023-12-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CryoEM structure of Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS' _pdbx_database_related.db_id EMD-43220 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email sudhamsu.jawahar@gene.com _pdbx_contact_author.name_first Jawahar _pdbx_contact_author.name_last Sudhamsu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0737-2299 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kung, J.E.' 1 0000-0002-6784-7076 'Sudhamsu, J.' 2 0000-0003-0737-2299 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2024.05.10.593593 _citation.pdbx_database_id_PubMed 38798381 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kung, J.E.' 1 0000-0002-6784-7076 primary 'Johnson, M.C.' 2 0000-0002-1477-7801 primary 'Jao, C.C.' 3 ? primary 'Arthur, C.P.' 4 ? primary 'Tegunov, D.' 5 0000-0001-7019-3221 primary 'Rohou, A.' 6 0000-0002-3343-9621 primary 'Sudhamsu, J.' 7 0000-0003-0737-2299 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Angiopoietin-2 26530.371 1 ? ? 'Receptor binding domain, UNP residues 225-444' ? 2 polymer man 'Fab 5A12.6DS heavy chain' 25234.367 1 ? ? ? ? 3 polymer man 'Fab 5A12.6DS light chain' 23230.070 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 43 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ANG-2 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AGSEQISFRDCAEVFKSGHTTNGIYTLTFPNSTEEIKAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVGFGNPSGEY WLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKC ICKCSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIRPADFGNSHHHHHH ; ;AGSEQISFRDCAEVFKSGHTTNGIYTLTFPNSTEEIKAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVGFGNPSGEY WLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKC ICKCSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIRPADFGNSHHHHHH ; A ? 2 'polypeptide(L)' no no ;EVQLVESGGGCVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKGLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAY LQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTCVTVSSASTKGPSVCPLAPSSKSTSGGTACLGCLVKDYFCECPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTHHHHHHP ; ;EVQLVESGGGCVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKGLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAY LQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTCVTVSSASTKGPSVCPLAPSSKSTSGGTACLGCLVKDYFCECPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTHHHHHHP ; H ? 3 'polypeptide(L)' no no ;DIQMTQSPSSLSASVGDRVTITCRASQFLSSFGVAWYQQKCGKAPKLLIYGASSLYSGVPSRFSGSGSGTDFTLTISSLQ CEDFATYYCQQGLLSPLTFGQGTKVEIKRTVAAPSVCIFPPSDECLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTCQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; ;DIQMTQSPSSLSASVGDRVTITCRASQFLSSFGVAWYQQKCGKAPKLLIYGASSLYSGVPSRFSGSGSGTDFTLTISSLQ CEDFATYYCQQGLLSPLTFGQGTKVEIKRTVAAPSVCIFPPSDECLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTCQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; L ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLY n 1 3 SER n 1 4 GLU n 1 5 GLN n 1 6 ILE n 1 7 SER n 1 8 PHE n 1 9 ARG n 1 10 ASP n 1 11 CYS n 1 12 ALA n 1 13 GLU n 1 14 VAL n 1 15 PHE n 1 16 LYS n 1 17 SER n 1 18 GLY n 1 19 HIS n 1 20 THR n 1 21 THR n 1 22 ASN n 1 23 GLY n 1 24 ILE n 1 25 TYR n 1 26 THR n 1 27 LEU n 1 28 THR n 1 29 PHE n 1 30 PRO n 1 31 ASN n 1 32 SER n 1 33 THR n 1 34 GLU n 1 35 GLU n 1 36 ILE n 1 37 LYS n 1 38 ALA n 1 39 TYR n 1 40 CYS n 1 41 ASP n 1 42 MET n 1 43 GLU n 1 44 ALA n 1 45 GLY n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 TRP n 1 50 THR n 1 51 ILE n 1 52 ILE n 1 53 GLN n 1 54 ARG n 1 55 ARG n 1 56 GLU n 1 57 ASP n 1 58 GLY n 1 59 SER n 1 60 VAL n 1 61 ASP n 1 62 PHE n 1 63 GLN n 1 64 ARG n 1 65 THR n 1 66 TRP n 1 67 LYS n 1 68 GLU n 1 69 TYR n 1 70 LYS n 1 71 VAL n 1 72 GLY n 1 73 PHE n 1 74 GLY n 1 75 ASN n 1 76 PRO n 1 77 SER n 1 78 GLY n 1 79 GLU n 1 80 TYR n 1 81 TRP n 1 82 LEU n 1 83 GLY n 1 84 ASN n 1 85 GLU n 1 86 PHE n 1 87 VAL n 1 88 SER n 1 89 GLN n 1 90 LEU n 1 91 THR n 1 92 ASN n 1 93 GLN n 1 94 GLN n 1 95 ARG n 1 96 TYR n 1 97 VAL n 1 98 LEU n 1 99 LYS n 1 100 ILE n 1 101 HIS n 1 102 LEU n 1 103 LYS n 1 104 ASP n 1 105 TRP n 1 106 GLU n 1 107 GLY n 1 108 ASN n 1 109 GLU n 1 110 ALA n 1 111 TYR n 1 112 SER n 1 113 LEU n 1 114 TYR n 1 115 GLU n 1 116 HIS n 1 117 PHE n 1 118 TYR n 1 119 LEU n 1 120 SER n 1 121 SER n 1 122 GLU n 1 123 GLU n 1 124 LEU n 1 125 ASN n 1 126 TYR n 1 127 ARG n 1 128 ILE n 1 129 HIS n 1 130 LEU n 1 131 LYS n 1 132 GLY n 1 133 LEU n 1 134 THR n 1 135 GLY n 1 136 THR n 1 137 ALA n 1 138 GLY n 1 139 LYS n 1 140 ILE n 1 141 SER n 1 142 SER n 1 143 ILE n 1 144 SER n 1 145 GLN n 1 146 PRO n 1 147 GLY n 1 148 ASN n 1 149 ASP n 1 150 PHE n 1 151 SER n 1 152 THR n 1 153 LYS n 1 154 ASP n 1 155 GLY n 1 156 ASP n 1 157 ASN n 1 158 ASP n 1 159 LYS n 1 160 CYS n 1 161 ILE n 1 162 CYS n 1 163 LYS n 1 164 CYS n 1 165 SER n 1 166 GLN n 1 167 MET n 1 168 LEU n 1 169 THR n 1 170 GLY n 1 171 GLY n 1 172 TRP n 1 173 TRP n 1 174 PHE n 1 175 ASP n 1 176 ALA n 1 177 CYS n 1 178 GLY n 1 179 PRO n 1 180 SER n 1 181 ASN n 1 182 LEU n 1 183 ASN n 1 184 GLY n 1 185 MET n 1 186 TYR n 1 187 TYR n 1 188 PRO n 1 189 GLN n 1 190 ARG n 1 191 GLN n 1 192 ASN n 1 193 THR n 1 194 ASN n 1 195 LYS n 1 196 PHE n 1 197 ASN n 1 198 GLY n 1 199 ILE n 1 200 LYS n 1 201 TRP n 1 202 TYR n 1 203 TYR n 1 204 TRP n 1 205 LYS n 1 206 GLY n 1 207 SER n 1 208 GLY n 1 209 TYR n 1 210 SER n 1 211 LEU n 1 212 LYS n 1 213 ALA n 1 214 THR n 1 215 THR n 1 216 MET n 1 217 MET n 1 218 ILE n 1 219 ARG n 1 220 PRO n 1 221 ALA n 1 222 ASP n 1 223 PHE n 1 224 GLY n 1 225 ASN n 1 226 SER n 1 227 HIS n 1 228 HIS n 1 229 HIS n 1 230 HIS n 1 231 HIS n 1 232 HIS n 2 1 GLU n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 CYS n 2 12 VAL n 2 13 GLN n 2 14 PRO n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 LEU n 2 19 ARG n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 ALA n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 ILE n 2 30 SER n 2 31 ASP n 2 32 TYR n 2 33 TRP n 2 34 ILE n 2 35 HIS n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 VAL n 2 49 ALA n 2 50 GLY n 2 51 ILE n 2 52 THR n 2 53 PRO n 2 54 ALA n 2 55 GLY n 2 56 GLY n 2 57 TYR n 2 58 THR n 2 59 TYR n 2 60 TYR n 2 61 ALA n 2 62 ASP n 2 63 SER n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 ALA n 2 73 ASP n 2 74 THR n 2 75 SER n 2 76 LYS n 2 77 ASN n 2 78 THR n 2 79 ALA n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 MET n 2 84 ASN n 2 85 SER n 2 86 LEU n 2 87 ARG n 2 88 ALA n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ARG n 2 99 PHE n 2 100 VAL n 2 101 PHE n 2 102 PHE n 2 103 LEU n 2 104 PRO n 2 105 TYR n 2 106 ALA n 2 107 MET n 2 108 ASP n 2 109 TYR n 2 110 TRP n 2 111 GLY n 2 112 GLN n 2 113 GLY n 2 114 THR n 2 115 CYS n 2 116 VAL n 2 117 THR n 2 118 VAL n 2 119 SER n 2 120 SER n 2 121 ALA n 2 122 SER n 2 123 THR n 2 124 LYS n 2 125 GLY n 2 126 PRO n 2 127 SER n 2 128 VAL n 2 129 CYS n 2 130 PRO n 2 131 LEU n 2 132 ALA n 2 133 PRO n 2 134 SER n 2 135 SER n 2 136 LYS n 2 137 SER n 2 138 THR n 2 139 SER n 2 140 GLY n 2 141 GLY n 2 142 THR n 2 143 ALA n 2 144 CYS n 2 145 LEU n 2 146 GLY n 2 147 CYS n 2 148 LEU n 2 149 VAL n 2 150 LYS n 2 151 ASP n 2 152 TYR n 2 153 PHE n 2 154 CYS n 2 155 GLU n 2 156 CYS n 2 157 PRO n 2 158 VAL n 2 159 THR n 2 160 VAL n 2 161 SER n 2 162 TRP n 2 163 ASN n 2 164 SER n 2 165 GLY n 2 166 ALA n 2 167 LEU n 2 168 THR n 2 169 SER n 2 170 GLY n 2 171 VAL n 2 172 HIS n 2 173 THR n 2 174 PHE n 2 175 PRO n 2 176 ALA n 2 177 VAL n 2 178 LEU n 2 179 GLN n 2 180 SER n 2 181 SER n 2 182 GLY n 2 183 LEU n 2 184 TYR n 2 185 SER n 2 186 LEU n 2 187 SER n 2 188 SER n 2 189 VAL n 2 190 VAL n 2 191 THR n 2 192 VAL n 2 193 PRO n 2 194 SER n 2 195 SER n 2 196 SER n 2 197 LEU n 2 198 GLY n 2 199 THR n 2 200 GLN n 2 201 THR n 2 202 TYR n 2 203 ILE n 2 204 CYS n 2 205 ASN n 2 206 VAL n 2 207 ASN n 2 208 HIS n 2 209 LYS n 2 210 PRO n 2 211 SER n 2 212 ASN n 2 213 THR n 2 214 LYS n 2 215 VAL n 2 216 ASP n 2 217 LYS n 2 218 LYS n 2 219 VAL n 2 220 GLU n 2 221 PRO n 2 222 LYS n 2 223 SER n 2 224 CYS n 2 225 ASP n 2 226 LYS n 2 227 THR n 2 228 HIS n 2 229 THR n 2 230 HIS n 2 231 HIS n 2 232 HIS n 2 233 HIS n 2 234 HIS n 2 235 HIS n 2 236 PRO n 3 1 ASP n 3 2 ILE n 3 3 GLN n 3 4 MET n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 SER n 3 10 SER n 3 11 LEU n 3 12 SER n 3 13 ALA n 3 14 SER n 3 15 VAL n 3 16 GLY n 3 17 ASP n 3 18 ARG n 3 19 VAL n 3 20 THR n 3 21 ILE n 3 22 THR n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 PHE n 3 29 LEU n 3 30 SER n 3 31 SER n 3 32 PHE n 3 33 GLY n 3 34 VAL n 3 35 ALA n 3 36 TRP n 3 37 TYR n 3 38 GLN n 3 39 GLN n 3 40 LYS n 3 41 CYS n 3 42 GLY n 3 43 LYS n 3 44 ALA n 3 45 PRO n 3 46 LYS n 3 47 LEU n 3 48 LEU n 3 49 ILE n 3 50 TYR n 3 51 GLY n 3 52 ALA n 3 53 SER n 3 54 SER n 3 55 LEU n 3 56 TYR n 3 57 SER n 3 58 GLY n 3 59 VAL n 3 60 PRO n 3 61 SER n 3 62 ARG n 3 63 PHE n 3 64 SER n 3 65 GLY n 3 66 SER n 3 67 GLY n 3 68 SER n 3 69 GLY n 3 70 THR n 3 71 ASP n 3 72 PHE n 3 73 THR n 3 74 LEU n 3 75 THR n 3 76 ILE n 3 77 SER n 3 78 SER n 3 79 LEU n 3 80 GLN n 3 81 CYS n 3 82 GLU n 3 83 ASP n 3 84 PHE n 3 85 ALA n 3 86 THR n 3 87 TYR n 3 88 TYR n 3 89 CYS n 3 90 GLN n 3 91 GLN n 3 92 GLY n 3 93 LEU n 3 94 LEU n 3 95 SER n 3 96 PRO n 3 97 LEU n 3 98 THR n 3 99 PHE n 3 100 GLY n 3 101 GLN n 3 102 GLY n 3 103 THR n 3 104 LYS n 3 105 VAL n 3 106 GLU n 3 107 ILE n 3 108 LYS n 3 109 ARG n 3 110 THR n 3 111 VAL n 3 112 ALA n 3 113 ALA n 3 114 PRO n 3 115 SER n 3 116 VAL n 3 117 CYS n 3 118 ILE n 3 119 PHE n 3 120 PRO n 3 121 PRO n 3 122 SER n 3 123 ASP n 3 124 GLU n 3 125 CYS n 3 126 LEU n 3 127 LYS n 3 128 SER n 3 129 GLY n 3 130 THR n 3 131 ALA n 3 132 SER n 3 133 VAL n 3 134 VAL n 3 135 CYS n 3 136 LEU n 3 137 LEU n 3 138 ASN n 3 139 ASN n 3 140 PHE n 3 141 TYR n 3 142 PRO n 3 143 ARG n 3 144 GLU n 3 145 ALA n 3 146 LYS n 3 147 VAL n 3 148 GLN n 3 149 TRP n 3 150 LYS n 3 151 VAL n 3 152 ASP n 3 153 ASN n 3 154 ALA n 3 155 LEU n 3 156 GLN n 3 157 SER n 3 158 GLY n 3 159 ASN n 3 160 SER n 3 161 GLN n 3 162 GLU n 3 163 SER n 3 164 VAL n 3 165 THR n 3 166 CYS n 3 167 GLN n 3 168 ASP n 3 169 SER n 3 170 LYS n 3 171 ASP n 3 172 CYS n 3 173 THR n 3 174 TYR n 3 175 SER n 3 176 LEU n 3 177 SER n 3 178 SER n 3 179 THR n 3 180 LEU n 3 181 THR n 3 182 LEU n 3 183 SER n 3 184 LYS n 3 185 ALA n 3 186 ASP n 3 187 TYR n 3 188 GLU n 3 189 LYS n 3 190 HIS n 3 191 LYS n 3 192 VAL n 3 193 TYR n 3 194 ALA n 3 195 CYS n 3 196 GLU n 3 197 VAL n 3 198 THR n 3 199 HIS n 3 200 GLN n 3 201 GLY n 3 202 LEU n 3 203 SER n 3 204 SER n 3 205 PRO n 3 206 VAL n 3 207 THR n 3 208 LYS n 3 209 SER n 3 210 PHE n 3 211 ASN n 3 212 ARG n 3 213 GLY n 3 214 GLU n 3 215 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 232 human ? ANGPT2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'cabbage looper' 'Trichoplusia ni' 7111 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 236 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'Chinese hamster' 'Cricetulus griseus' 10029 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 215 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'Chinese hamster' 'Cricetulus griseus' 10029 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 274 ? ? ? A . n A 1 2 GLY 2 275 ? ? ? A . n A 1 3 SER 3 276 ? ? ? A . n A 1 4 GLU 4 277 ? ? ? A . n A 1 5 GLN 5 278 ? ? ? A . n A 1 6 ILE 6 279 279 ILE ILE A . n A 1 7 SER 7 280 280 SER SER A . n A 1 8 PHE 8 281 281 PHE PHE A . n A 1 9 ARG 9 282 282 ARG ARG A . n A 1 10 ASP 10 283 283 ASP ASP A . n A 1 11 CYS 11 284 284 CYS CYS A . n A 1 12 ALA 12 285 285 ALA ALA A . n A 1 13 GLU 13 286 286 GLU GLU A . n A 1 14 VAL 14 287 287 VAL VAL A . n A 1 15 PHE 15 288 288 PHE PHE A . n A 1 16 LYS 16 289 289 LYS LYS A . n A 1 17 SER 17 290 290 SER SER A . n A 1 18 GLY 18 291 291 GLY GLY A . n A 1 19 HIS 19 292 292 HIS HIS A . n A 1 20 THR 20 293 293 THR THR A . n A 1 21 THR 21 294 294 THR THR A . n A 1 22 ASN 22 295 295 ASN ASN A . n A 1 23 GLY 23 296 296 GLY GLY A . n A 1 24 ILE 24 297 297 ILE ILE A . n A 1 25 TYR 25 298 298 TYR TYR A . n A 1 26 THR 26 299 299 THR THR A . n A 1 27 LEU 27 300 300 LEU LEU A . n A 1 28 THR 28 301 301 THR THR A . n A 1 29 PHE 29 302 302 PHE PHE A . n A 1 30 PRO 30 303 303 PRO PRO A . n A 1 31 ASN 31 304 304 ASN ASN A . n A 1 32 SER 32 305 305 SER SER A . n A 1 33 THR 33 306 306 THR THR A . n A 1 34 GLU 34 307 307 GLU GLU A . n A 1 35 GLU 35 308 308 GLU GLU A . n A 1 36 ILE 36 309 309 ILE ILE A . n A 1 37 LYS 37 310 310 LYS LYS A . n A 1 38 ALA 38 311 311 ALA ALA A . n A 1 39 TYR 39 312 312 TYR TYR A . n A 1 40 CYS 40 313 313 CYS CYS A . n A 1 41 ASP 41 314 314 ASP ASP A . n A 1 42 MET 42 315 315 MET MET A . n A 1 43 GLU 43 316 316 GLU GLU A . n A 1 44 ALA 44 317 317 ALA ALA A . n A 1 45 GLY 45 318 318 GLY GLY A . n A 1 46 GLY 46 319 319 GLY GLY A . n A 1 47 GLY 47 320 320 GLY GLY A . n A 1 48 GLY 48 321 321 GLY GLY A . n A 1 49 TRP 49 322 322 TRP TRP A . n A 1 50 THR 50 323 323 THR THR A . n A 1 51 ILE 51 324 324 ILE ILE A . n A 1 52 ILE 52 325 325 ILE ILE A . n A 1 53 GLN 53 326 326 GLN GLN A . n A 1 54 ARG 54 327 327 ARG ARG A . n A 1 55 ARG 55 328 328 ARG ARG A . n A 1 56 GLU 56 329 329 GLU GLU A . n A 1 57 ASP 57 330 330 ASP ASP A . n A 1 58 GLY 58 331 331 GLY GLY A . n A 1 59 SER 59 332 332 SER SER A . n A 1 60 VAL 60 333 333 VAL VAL A . n A 1 61 ASP 61 334 334 ASP ASP A . n A 1 62 PHE 62 335 335 PHE PHE A . n A 1 63 GLN 63 336 336 GLN GLN A . n A 1 64 ARG 64 337 337 ARG ARG A . n A 1 65 THR 65 338 338 THR THR A . n A 1 66 TRP 66 339 339 TRP TRP A . n A 1 67 LYS 67 340 340 LYS LYS A . n A 1 68 GLU 68 341 341 GLU GLU A . n A 1 69 TYR 69 342 342 TYR TYR A . n A 1 70 LYS 70 343 343 LYS LYS A . n A 1 71 VAL 71 344 344 VAL VAL A . n A 1 72 GLY 72 345 345 GLY GLY A . n A 1 73 PHE 73 346 346 PHE PHE A . n A 1 74 GLY 74 347 347 GLY GLY A . n A 1 75 ASN 75 348 348 ASN ASN A . n A 1 76 PRO 76 349 349 PRO PRO A . n A 1 77 SER 77 350 350 SER SER A . n A 1 78 GLY 78 351 351 GLY GLY A . n A 1 79 GLU 79 352 352 GLU GLU A . n A 1 80 TYR 80 353 353 TYR TYR A . n A 1 81 TRP 81 354 354 TRP TRP A . n A 1 82 LEU 82 355 355 LEU LEU A . n A 1 83 GLY 83 356 356 GLY GLY A . n A 1 84 ASN 84 357 357 ASN ASN A . n A 1 85 GLU 85 358 358 GLU GLU A . n A 1 86 PHE 86 359 359 PHE PHE A . n A 1 87 VAL 87 360 360 VAL VAL A . n A 1 88 SER 88 361 361 SER SER A . n A 1 89 GLN 89 362 362 GLN GLN A . n A 1 90 LEU 90 363 363 LEU LEU A . n A 1 91 THR 91 364 364 THR THR A . n A 1 92 ASN 92 365 365 ASN ASN A . n A 1 93 GLN 93 366 366 GLN GLN A . n A 1 94 GLN 94 367 367 GLN GLN A . n A 1 95 ARG 95 368 368 ARG ARG A . n A 1 96 TYR 96 369 369 TYR TYR A . n A 1 97 VAL 97 370 370 VAL VAL A . n A 1 98 LEU 98 371 371 LEU LEU A . n A 1 99 LYS 99 372 372 LYS LYS A . n A 1 100 ILE 100 373 373 ILE ILE A . n A 1 101 HIS 101 374 374 HIS HIS A . n A 1 102 LEU 102 375 375 LEU LEU A . n A 1 103 LYS 103 376 376 LYS LYS A . n A 1 104 ASP 104 377 377 ASP ASP A . n A 1 105 TRP 105 378 378 TRP TRP A . n A 1 106 GLU 106 379 379 GLU GLU A . n A 1 107 GLY 107 380 380 GLY GLY A . n A 1 108 ASN 108 381 381 ASN ASN A . n A 1 109 GLU 109 382 382 GLU GLU A . n A 1 110 ALA 110 383 383 ALA ALA A . n A 1 111 TYR 111 384 384 TYR TYR A . n A 1 112 SER 112 385 385 SER SER A . n A 1 113 LEU 113 386 386 LEU LEU A . n A 1 114 TYR 114 387 387 TYR TYR A . n A 1 115 GLU 115 388 388 GLU GLU A . n A 1 116 HIS 116 389 389 HIS HIS A . n A 1 117 PHE 117 390 390 PHE PHE A . n A 1 118 TYR 118 391 391 TYR TYR A . n A 1 119 LEU 119 392 392 LEU LEU A . n A 1 120 SER 120 393 393 SER SER A . n A 1 121 SER 121 394 394 SER SER A . n A 1 122 GLU 122 395 395 GLU GLU A . n A 1 123 GLU 123 396 396 GLU GLU A . n A 1 124 LEU 124 397 397 LEU LEU A . n A 1 125 ASN 125 398 398 ASN ASN A . n A 1 126 TYR 126 399 399 TYR TYR A . n A 1 127 ARG 127 400 400 ARG ARG A . n A 1 128 ILE 128 401 401 ILE ILE A . n A 1 129 HIS 129 402 402 HIS HIS A . n A 1 130 LEU 130 403 403 LEU LEU A . n A 1 131 LYS 131 404 404 LYS LYS A . n A 1 132 GLY 132 405 405 GLY GLY A . n A 1 133 LEU 133 406 406 LEU LEU A . n A 1 134 THR 134 407 407 THR THR A . n A 1 135 GLY 135 408 408 GLY GLY A . n A 1 136 THR 136 409 409 THR THR A . n A 1 137 ALA 137 410 410 ALA ALA A . n A 1 138 GLY 138 411 411 GLY GLY A . n A 1 139 LYS 139 412 412 LYS LYS A . n A 1 140 ILE 140 413 413 ILE ILE A . n A 1 141 SER 141 414 414 SER SER A . n A 1 142 SER 142 415 415 SER SER A . n A 1 143 ILE 143 416 416 ILE ILE A . n A 1 144 SER 144 417 417 SER SER A . n A 1 145 GLN 145 418 418 GLN GLN A . n A 1 146 PRO 146 419 419 PRO PRO A . n A 1 147 GLY 147 420 420 GLY GLY A . n A 1 148 ASN 148 421 421 ASN ASN A . n A 1 149 ASP 149 422 422 ASP ASP A . n A 1 150 PHE 150 423 423 PHE PHE A . n A 1 151 SER 151 424 424 SER SER A . n A 1 152 THR 152 425 425 THR THR A . n A 1 153 LYS 153 426 426 LYS LYS A . n A 1 154 ASP 154 427 427 ASP ASP A . n A 1 155 GLY 155 428 428 GLY GLY A . n A 1 156 ASP 156 429 429 ASP ASP A . n A 1 157 ASN 157 430 430 ASN ASN A . n A 1 158 ASP 158 431 431 ASP ASP A . n A 1 159 LYS 159 432 432 LYS LYS A . n A 1 160 CYS 160 433 433 CYS CYS A . n A 1 161 ILE 161 434 434 ILE ILE A . n A 1 162 CYS 162 435 435 CYS CYS A . n A 1 163 LYS 163 436 436 LYS LYS A . n A 1 164 CYS 164 437 437 CYS CYS A . n A 1 165 SER 165 438 438 SER SER A . n A 1 166 GLN 166 439 439 GLN GLN A . n A 1 167 MET 167 440 440 MET MET A . n A 1 168 LEU 168 441 441 LEU LEU A . n A 1 169 THR 169 442 442 THR THR A . n A 1 170 GLY 170 443 443 GLY GLY A . n A 1 171 GLY 171 444 444 GLY GLY A . n A 1 172 TRP 172 445 445 TRP TRP A . n A 1 173 TRP 173 446 446 TRP TRP A . n A 1 174 PHE 174 447 447 PHE PHE A . n A 1 175 ASP 175 448 448 ASP ASP A . n A 1 176 ALA 176 449 449 ALA ALA A . n A 1 177 CYS 177 450 450 CYS CYS A . n A 1 178 GLY 178 451 451 GLY GLY A . n A 1 179 PRO 179 452 452 PRO PRO A . n A 1 180 SER 180 453 453 SER SER A . n A 1 181 ASN 181 454 454 ASN ASN A . n A 1 182 LEU 182 455 455 LEU LEU A . n A 1 183 ASN 183 456 456 ASN ASN A . n A 1 184 GLY 184 457 457 GLY GLY A . n A 1 185 MET 185 458 458 MET MET A . n A 1 186 TYR 186 459 459 TYR TYR A . n A 1 187 TYR 187 460 460 TYR TYR A . n A 1 188 PRO 188 461 461 PRO PRO A . n A 1 189 GLN 189 462 462 GLN GLN A . n A 1 190 ARG 190 463 463 ARG ARG A . n A 1 191 GLN 191 464 464 GLN GLN A . n A 1 192 ASN 192 465 465 ASN ASN A . n A 1 193 THR 193 466 466 THR THR A . n A 1 194 ASN 194 467 467 ASN ASN A . n A 1 195 LYS 195 468 468 LYS LYS A . n A 1 196 PHE 196 469 469 PHE PHE A . n A 1 197 ASN 197 470 470 ASN ASN A . n A 1 198 GLY 198 471 471 GLY GLY A . n A 1 199 ILE 199 472 472 ILE ILE A . n A 1 200 LYS 200 473 473 LYS LYS A . n A 1 201 TRP 201 474 474 TRP TRP A . n A 1 202 TYR 202 475 475 TYR TYR A . n A 1 203 TYR 203 476 476 TYR TYR A . n A 1 204 TRP 204 477 477 TRP TRP A . n A 1 205 LYS 205 478 478 LYS LYS A . n A 1 206 GLY 206 479 479 GLY GLY A . n A 1 207 SER 207 480 480 SER SER A . n A 1 208 GLY 208 481 481 GLY GLY A . n A 1 209 TYR 209 482 482 TYR TYR A . n A 1 210 SER 210 483 483 SER SER A . n A 1 211 LEU 211 484 484 LEU LEU A . n A 1 212 LYS 212 485 485 LYS LYS A . n A 1 213 ALA 213 486 486 ALA ALA A . n A 1 214 THR 214 487 487 THR THR A . n A 1 215 THR 215 488 488 THR THR A . n A 1 216 MET 216 489 489 MET MET A . n A 1 217 MET 217 490 490 MET MET A . n A 1 218 ILE 218 491 491 ILE ILE A . n A 1 219 ARG 219 492 492 ARG ARG A . n A 1 220 PRO 220 493 493 PRO PRO A . n A 1 221 ALA 221 494 494 ALA ALA A . n A 1 222 ASP 222 495 495 ASP ASP A . n A 1 223 PHE 223 496 496 PHE PHE A . n A 1 224 GLY 224 497 ? ? ? A . n A 1 225 ASN 225 498 ? ? ? A . n A 1 226 SER 226 499 ? ? ? A . n A 1 227 HIS 227 500 ? ? ? A . n A 1 228 HIS 228 501 ? ? ? A . n A 1 229 HIS 229 502 ? ? ? A . n A 1 230 HIS 230 503 ? ? ? A . n A 1 231 HIS 231 504 ? ? ? A . n A 1 232 HIS 232 505 ? ? ? A . n B 2 1 GLU 1 1 1 GLU GLU H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 VAL 5 5 5 VAL VAL H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 GLY 9 9 9 GLY GLY H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 CYS 11 11 11 CYS CYS H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 GLN 13 13 13 GLN GLN H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 GLY 16 16 16 GLY GLY H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 ARG 19 19 19 ARG ARG H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 ALA 23 23 23 ALA ALA H . n B 2 24 ALA 24 24 24 ALA ALA H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 THR 28 28 28 THR THR H . n B 2 29 ILE 29 29 29 ILE ILE H . n B 2 30 SER 30 30 30 SER SER H . n B 2 31 ASP 31 31 31 ASP ASP H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 TRP 33 33 33 TRP TRP H . n B 2 34 ILE 34 34 34 ILE ILE H . n B 2 35 HIS 35 35 35 HIS HIS H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 ALA 40 40 40 ALA ALA H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLY 42 42 42 GLY GLY H . n B 2 43 LYS 43 43 43 LYS LYS H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 VAL 48 48 48 VAL VAL H . n B 2 49 ALA 49 49 49 ALA ALA H . n B 2 50 GLY 50 50 50 GLY GLY H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 THR 52 52 52 THR THR H . n B 2 53 PRO 53 52 52 PRO PRO H A n B 2 54 ALA 54 53 53 ALA ALA H . n B 2 55 GLY 55 54 54 GLY GLY H . n B 2 56 GLY 56 55 55 GLY GLY H . n B 2 57 TYR 57 56 56 TYR TYR H . n B 2 58 THR 58 57 57 THR THR H . n B 2 59 TYR 59 58 58 TYR TYR H . n B 2 60 TYR 60 59 59 TYR TYR H . n B 2 61 ALA 61 60 60 ALA ALA H . n B 2 62 ASP 62 61 61 ASP ASP H . n B 2 63 SER 63 62 62 SER SER H . n B 2 64 VAL 64 63 63 VAL VAL H . n B 2 65 LYS 65 64 64 LYS LYS H . n B 2 66 GLY 66 65 65 GLY GLY H . n B 2 67 ARG 67 66 66 ARG ARG H . n B 2 68 PHE 68 67 67 PHE PHE H . n B 2 69 THR 69 68 68 THR THR H . n B 2 70 ILE 70 69 69 ILE ILE H . n B 2 71 SER 71 70 70 SER SER H . n B 2 72 ALA 72 71 71 ALA ALA H . n B 2 73 ASP 73 72 72 ASP ASP H . n B 2 74 THR 74 73 73 THR THR H . n B 2 75 SER 75 74 74 SER SER H . n B 2 76 LYS 76 75 75 LYS LYS H . n B 2 77 ASN 77 76 76 ASN ASN H . n B 2 78 THR 78 77 77 THR THR H . n B 2 79 ALA 79 78 78 ALA ALA H . n B 2 80 TYR 80 79 79 TYR TYR H . n B 2 81 LEU 81 80 80 LEU LEU H . n B 2 82 GLN 82 81 81 GLN GLN H . n B 2 83 MET 83 82 82 MET MET H . n B 2 84 ASN 84 82 82 ASN ASN H A n B 2 85 SER 85 82 82 SER SER H B n B 2 86 LEU 86 82 82 LEU LEU H C n B 2 87 ARG 87 83 83 ARG ARG H . n B 2 88 ALA 88 84 84 ALA ALA H . n B 2 89 GLU 89 85 85 GLU GLU H . n B 2 90 ASP 90 86 86 ASP ASP H . n B 2 91 THR 91 87 87 THR THR H . n B 2 92 ALA 92 88 88 ALA ALA H . n B 2 93 VAL 93 89 89 VAL VAL H . n B 2 94 TYR 94 90 90 TYR TYR H . n B 2 95 TYR 95 91 91 TYR TYR H . n B 2 96 CYS 96 92 92 CYS CYS H . n B 2 97 ALA 97 93 93 ALA ALA H . n B 2 98 ARG 98 94 94 ARG ARG H . n B 2 99 PHE 99 95 95 PHE PHE H . n B 2 100 VAL 100 96 96 VAL VAL H . n B 2 101 PHE 101 97 97 PHE PHE H . n B 2 102 PHE 102 98 98 PHE PHE H . n B 2 103 LEU 103 99 99 LEU LEU H . n B 2 104 PRO 104 100 100 PRO PRO H . n B 2 105 TYR 105 100 100 TYR TYR H A n B 2 106 ALA 106 100 100 ALA ALA H B n B 2 107 MET 107 100 100 MET MET H C n B 2 108 ASP 108 101 101 ASP ASP H . n B 2 109 TYR 109 102 102 TYR TYR H . n B 2 110 TRP 110 103 103 TRP TRP H . n B 2 111 GLY 111 104 104 GLY GLY H . n B 2 112 GLN 112 105 105 GLN GLN H . n B 2 113 GLY 113 106 106 GLY GLY H . n B 2 114 THR 114 107 107 THR THR H . n B 2 115 CYS 115 108 108 CYS CYS H . n B 2 116 VAL 116 109 109 VAL VAL H . n B 2 117 THR 117 110 110 THR THR H . n B 2 118 VAL 118 111 111 VAL VAL H . n B 2 119 SER 119 112 112 SER SER H . n B 2 120 SER 120 113 113 SER SER H . n B 2 121 ALA 121 114 114 ALA ALA H . n B 2 122 SER 122 115 115 SER SER H . n B 2 123 THR 123 116 116 THR THR H . n B 2 124 LYS 124 117 117 LYS LYS H . n B 2 125 GLY 125 122 122 GLY GLY H . n B 2 126 PRO 126 123 123 PRO PRO H . n B 2 127 SER 127 124 124 SER SER H . n B 2 128 VAL 128 125 125 VAL VAL H . n B 2 129 CYS 129 126 126 CYS CYS H . n B 2 130 PRO 130 127 127 PRO PRO H . n B 2 131 LEU 131 128 128 LEU LEU H . n B 2 132 ALA 132 129 129 ALA ALA H . n B 2 133 PRO 133 130 130 PRO PRO H . n B 2 134 SER 134 131 131 SER SER H . n B 2 135 SER 135 132 132 SER SER H . n B 2 136 LYS 136 133 ? ? ? H . n B 2 137 SER 137 134 ? ? ? H . n B 2 138 THR 138 135 ? ? ? H . n B 2 139 SER 139 136 ? ? ? H . n B 2 140 GLY 140 137 137 GLY GLY H . n B 2 141 GLY 141 138 138 GLY GLY H . n B 2 142 THR 142 139 139 THR THR H . n B 2 143 ALA 143 140 140 ALA ALA H . n B 2 144 CYS 144 141 141 CYS CYS H . n B 2 145 LEU 145 142 142 LEU LEU H . n B 2 146 GLY 146 143 143 GLY GLY H . n B 2 147 CYS 147 144 144 CYS CYS H . n B 2 148 LEU 148 145 145 LEU LEU H . n B 2 149 VAL 149 146 146 VAL VAL H . n B 2 150 LYS 150 147 147 LYS LYS H . n B 2 151 ASP 151 148 148 ASP ASP H . n B 2 152 TYR 152 149 149 TYR TYR H . n B 2 153 PHE 153 150 150 PHE PHE H . n B 2 154 CYS 154 151 151 CYS CYS H . n B 2 155 GLU 155 152 152 GLU GLU H . n B 2 156 CYS 156 153 153 CYS CYS H . n B 2 157 PRO 157 154 154 PRO PRO H . n B 2 158 VAL 158 155 155 VAL VAL H . n B 2 159 THR 159 156 156 THR THR H . n B 2 160 VAL 160 157 157 VAL VAL H . n B 2 161 SER 161 158 158 SER SER H . n B 2 162 TRP 162 159 159 TRP TRP H . n B 2 163 ASN 163 160 160 ASN ASN H . n B 2 164 SER 164 161 161 SER SER H . n B 2 165 GLY 165 162 162 GLY GLY H . n B 2 166 ALA 166 163 163 ALA ALA H . n B 2 167 LEU 167 164 164 LEU LEU H . n B 2 168 THR 168 165 165 THR THR H . n B 2 169 SER 169 166 166 SER SER H . n B 2 170 GLY 170 167 167 GLY GLY H . n B 2 171 VAL 171 168 168 VAL VAL H . n B 2 172 HIS 172 169 169 HIS HIS H . n B 2 173 THR 173 170 170 THR THR H . n B 2 174 PHE 174 171 171 PHE PHE H . n B 2 175 PRO 175 172 172 PRO PRO H . n B 2 176 ALA 176 173 173 ALA ALA H . n B 2 177 VAL 177 174 174 VAL VAL H . n B 2 178 LEU 178 175 175 LEU LEU H . n B 2 179 GLN 179 176 176 GLN GLN H . n B 2 180 SER 180 177 177 SER SER H . n B 2 181 SER 181 178 178 SER SER H . n B 2 182 GLY 182 179 179 GLY GLY H . n B 2 183 LEU 183 180 180 LEU LEU H . n B 2 184 TYR 184 181 181 TYR TYR H . n B 2 185 SER 185 182 182 SER SER H . n B 2 186 LEU 186 183 183 LEU LEU H . n B 2 187 SER 187 184 184 SER SER H . n B 2 188 SER 188 185 185 SER SER H . n B 2 189 VAL 189 186 186 VAL VAL H . n B 2 190 VAL 190 187 187 VAL VAL H . n B 2 191 THR 191 188 188 THR THR H . n B 2 192 VAL 192 189 189 VAL VAL H . n B 2 193 PRO 193 190 190 PRO PRO H . n B 2 194 SER 194 191 191 SER SER H . n B 2 195 SER 195 192 192 SER SER H . n B 2 196 SER 196 193 193 SER SER H . n B 2 197 LEU 197 194 194 LEU LEU H . n B 2 198 GLY 198 195 195 GLY GLY H . n B 2 199 THR 199 196 196 THR THR H . n B 2 200 GLN 200 197 197 GLN GLN H . n B 2 201 THR 201 198 198 THR THR H . n B 2 202 TYR 202 199 199 TYR TYR H . n B 2 203 ILE 203 200 200 ILE ILE H . n B 2 204 CYS 204 201 201 CYS CYS H . n B 2 205 ASN 205 202 202 ASN ASN H . n B 2 206 VAL 206 203 203 VAL VAL H . n B 2 207 ASN 207 204 204 ASN ASN H . n B 2 208 HIS 208 205 205 HIS HIS H . n B 2 209 LYS 209 206 206 LYS LYS H . n B 2 210 PRO 210 207 207 PRO PRO H . n B 2 211 SER 211 208 208 SER SER H . n B 2 212 ASN 212 209 209 ASN ASN H . n B 2 213 THR 213 210 210 THR THR H . n B 2 214 LYS 214 211 211 LYS LYS H . n B 2 215 VAL 215 212 212 VAL VAL H . n B 2 216 ASP 216 213 213 ASP ASP H . n B 2 217 LYS 217 214 214 LYS LYS H . n B 2 218 LYS 218 215 215 LYS LYS H . n B 2 219 VAL 219 216 216 VAL VAL H . n B 2 220 GLU 220 217 217 GLU GLU H . n B 2 221 PRO 221 218 218 PRO PRO H . n B 2 222 LYS 222 219 ? ? ? H . n B 2 223 SER 223 220 ? ? ? H . n B 2 224 CYS 224 221 ? ? ? H . n B 2 225 ASP 225 222 ? ? ? H . n B 2 226 LYS 226 223 ? ? ? H . n B 2 227 THR 227 224 ? ? ? H . n B 2 228 HIS 228 225 ? ? ? H . n B 2 229 THR 229 226 ? ? ? H . n B 2 230 HIS 230 227 ? ? ? H . n B 2 231 HIS 231 228 ? ? ? H . n B 2 232 HIS 232 229 ? ? ? H . n B 2 233 HIS 233 230 ? ? ? H . n B 2 234 HIS 234 231 ? ? ? H . n B 2 235 HIS 235 232 ? ? ? H . n B 2 236 PRO 236 233 ? ? ? H . n C 3 1 ASP 1 1 1 ASP ASP L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 GLN 3 3 3 GLN GLN L . n C 3 4 MET 4 4 4 MET MET L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 SER 7 7 7 SER SER L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 SER 9 9 9 SER SER L . n C 3 10 SER 10 10 10 SER SER L . n C 3 11 LEU 11 11 11 LEU LEU L . n C 3 12 SER 12 12 12 SER SER L . n C 3 13 ALA 13 13 13 ALA ALA L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 VAL 15 15 15 VAL VAL L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 ASP 17 17 17 ASP ASP L . n C 3 18 ARG 18 18 18 ARG ARG L . n C 3 19 VAL 19 19 19 VAL VAL L . n C 3 20 THR 20 20 20 THR THR L . n C 3 21 ILE 21 21 21 ILE ILE L . n C 3 22 THR 22 22 22 THR THR L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 ALA 25 25 25 ALA ALA L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 PHE 28 27 27 PHE PHE L A n C 3 29 LEU 29 28 28 LEU LEU L . n C 3 30 SER 30 29 29 SER SER L . n C 3 31 SER 31 30 30 SER SER L . n C 3 32 PHE 32 31 31 PHE PHE L . n C 3 33 GLY 33 32 32 GLY GLY L . n C 3 34 VAL 34 33 33 VAL VAL L . n C 3 35 ALA 35 34 34 ALA ALA L . n C 3 36 TRP 36 35 35 TRP TRP L . n C 3 37 TYR 37 36 36 TYR TYR L . n C 3 38 GLN 38 37 37 GLN GLN L . n C 3 39 GLN 39 38 38 GLN GLN L . n C 3 40 LYS 40 39 39 LYS LYS L . n C 3 41 CYS 41 40 40 CYS CYS L . n C 3 42 GLY 42 41 41 GLY GLY L . n C 3 43 LYS 43 42 42 LYS LYS L . n C 3 44 ALA 44 43 43 ALA ALA L . n C 3 45 PRO 45 44 44 PRO PRO L . n C 3 46 LYS 46 45 45 LYS LYS L . n C 3 47 LEU 47 46 46 LEU LEU L . n C 3 48 LEU 48 47 47 LEU LEU L . n C 3 49 ILE 49 48 48 ILE ILE L . n C 3 50 TYR 50 49 49 TYR TYR L . n C 3 51 GLY 51 50 50 GLY GLY L . n C 3 52 ALA 52 51 51 ALA ALA L . n C 3 53 SER 53 52 52 SER SER L . n C 3 54 SER 54 53 53 SER SER L . n C 3 55 LEU 55 54 54 LEU LEU L . n C 3 56 TYR 56 55 55 TYR TYR L . n C 3 57 SER 57 56 56 SER SER L . n C 3 58 GLY 58 57 57 GLY GLY L . n C 3 59 VAL 59 58 58 VAL VAL L . n C 3 60 PRO 60 59 59 PRO PRO L . n C 3 61 SER 61 60 60 SER SER L . n C 3 62 ARG 62 61 61 ARG ARG L . n C 3 63 PHE 63 62 62 PHE PHE L . n C 3 64 SER 64 63 63 SER SER L . n C 3 65 GLY 65 64 64 GLY GLY L . n C 3 66 SER 66 65 65 SER SER L . n C 3 67 GLY 67 66 66 GLY GLY L . n C 3 68 SER 68 67 67 SER SER L . n C 3 69 GLY 69 68 68 GLY GLY L . n C 3 70 THR 70 69 69 THR THR L . n C 3 71 ASP 71 70 70 ASP ASP L . n C 3 72 PHE 72 71 71 PHE PHE L . n C 3 73 THR 73 72 72 THR THR L . n C 3 74 LEU 74 73 73 LEU LEU L . n C 3 75 THR 75 74 74 THR THR L . n C 3 76 ILE 76 75 75 ILE ILE L . n C 3 77 SER 77 76 76 SER SER L . n C 3 78 SER 78 77 77 SER SER L . n C 3 79 LEU 79 78 78 LEU LEU L . n C 3 80 GLN 80 79 79 GLN GLN L . n C 3 81 CYS 81 80 80 CYS CYS L . n C 3 82 GLU 82 81 81 GLU GLU L . n C 3 83 ASP 83 82 82 ASP ASP L . n C 3 84 PHE 84 83 83 PHE PHE L . n C 3 85 ALA 85 84 84 ALA ALA L . n C 3 86 THR 86 85 85 THR THR L . n C 3 87 TYR 87 86 86 TYR TYR L . n C 3 88 TYR 88 87 87 TYR TYR L . n C 3 89 CYS 89 88 88 CYS CYS L . n C 3 90 GLN 90 89 89 GLN GLN L . n C 3 91 GLN 91 90 90 GLN GLN L . n C 3 92 GLY 92 91 91 GLY GLY L . n C 3 93 LEU 93 92 92 LEU LEU L . n C 3 94 LEU 94 93 93 LEU LEU L . n C 3 95 SER 95 94 94 SER SER L . n C 3 96 PRO 96 95 95 PRO PRO L . n C 3 97 LEU 97 96 96 LEU LEU L . n C 3 98 THR 98 97 97 THR THR L . n C 3 99 PHE 99 98 98 PHE PHE L . n C 3 100 GLY 100 99 99 GLY GLY L . n C 3 101 GLN 101 100 100 GLN GLN L . n C 3 102 GLY 102 101 101 GLY GLY L . n C 3 103 THR 103 102 102 THR THR L . n C 3 104 LYS 104 103 103 LYS LYS L . n C 3 105 VAL 105 104 104 VAL VAL L . n C 3 106 GLU 106 105 105 GLU GLU L . n C 3 107 ILE 107 106 106 ILE ILE L . n C 3 108 LYS 108 107 107 LYS LYS L . n C 3 109 ARG 109 108 108 ARG ARG L . n C 3 110 THR 110 109 109 THR THR L . n C 3 111 VAL 111 110 110 VAL VAL L . n C 3 112 ALA 112 111 111 ALA ALA L . n C 3 113 ALA 113 112 112 ALA ALA L . n C 3 114 PRO 114 113 113 PRO PRO L . n C 3 115 SER 115 114 114 SER SER L . n C 3 116 VAL 116 115 115 VAL VAL L . n C 3 117 CYS 117 116 116 CYS CYS L . n C 3 118 ILE 118 117 117 ILE ILE L . n C 3 119 PHE 119 118 118 PHE PHE L . n C 3 120 PRO 120 119 119 PRO PRO L . n C 3 121 PRO 121 120 120 PRO PRO L . n C 3 122 SER 122 121 121 SER SER L . n C 3 123 ASP 123 122 122 ASP ASP L . n C 3 124 GLU 124 123 123 GLU GLU L . n C 3 125 CYS 125 124 124 CYS CYS L . n C 3 126 LEU 126 125 125 LEU LEU L . n C 3 127 LYS 127 126 126 LYS LYS L . n C 3 128 SER 128 127 127 SER SER L . n C 3 129 GLY 129 128 128 GLY GLY L . n C 3 130 THR 130 129 129 THR THR L . n C 3 131 ALA 131 130 130 ALA ALA L . n C 3 132 SER 132 131 131 SER SER L . n C 3 133 VAL 133 132 132 VAL VAL L . n C 3 134 VAL 134 133 133 VAL VAL L . n C 3 135 CYS 135 134 134 CYS CYS L . n C 3 136 LEU 136 135 135 LEU LEU L . n C 3 137 LEU 137 136 136 LEU LEU L . n C 3 138 ASN 138 137 137 ASN ASN L . n C 3 139 ASN 139 138 138 ASN ASN L . n C 3 140 PHE 140 139 139 PHE PHE L . n C 3 141 TYR 141 140 140 TYR TYR L . n C 3 142 PRO 142 141 141 PRO PRO L . n C 3 143 ARG 143 142 142 ARG ARG L . n C 3 144 GLU 144 143 143 GLU GLU L . n C 3 145 ALA 145 144 144 ALA ALA L . n C 3 146 LYS 146 145 145 LYS LYS L . n C 3 147 VAL 147 146 146 VAL VAL L . n C 3 148 GLN 148 147 147 GLN GLN L . n C 3 149 TRP 149 148 148 TRP TRP L . n C 3 150 LYS 150 149 149 LYS LYS L . n C 3 151 VAL 151 150 150 VAL VAL L . n C 3 152 ASP 152 151 151 ASP ASP L . n C 3 153 ASN 153 152 152 ASN ASN L . n C 3 154 ALA 154 153 153 ALA ALA L . n C 3 155 LEU 155 154 154 LEU LEU L . n C 3 156 GLN 156 155 155 GLN GLN L . n C 3 157 SER 157 156 156 SER SER L . n C 3 158 GLY 158 157 157 GLY GLY L . n C 3 159 ASN 159 158 158 ASN ASN L . n C 3 160 SER 160 159 159 SER SER L . n C 3 161 GLN 161 160 160 GLN GLN L . n C 3 162 GLU 162 161 161 GLU GLU L . n C 3 163 SER 163 162 162 SER SER L . n C 3 164 VAL 164 163 163 VAL VAL L . n C 3 165 THR 165 164 164 THR THR L . n C 3 166 CYS 166 165 165 CYS CYS L . n C 3 167 GLN 167 166 166 GLN GLN L . n C 3 168 ASP 168 167 167 ASP ASP L . n C 3 169 SER 169 168 168 SER SER L . n C 3 170 LYS 170 169 169 LYS LYS L . n C 3 171 ASP 171 170 170 ASP ASP L . n C 3 172 CYS 172 171 171 CYS CYS L . n C 3 173 THR 173 172 172 THR THR L . n C 3 174 TYR 174 173 173 TYR TYR L . n C 3 175 SER 175 174 174 SER SER L . n C 3 176 LEU 176 175 175 LEU LEU L . n C 3 177 SER 177 176 176 SER SER L . n C 3 178 SER 178 177 177 SER SER L . n C 3 179 THR 179 178 178 THR THR L . n C 3 180 LEU 180 179 179 LEU LEU L . n C 3 181 THR 181 180 180 THR THR L . n C 3 182 LEU 182 181 181 LEU LEU L . n C 3 183 SER 183 182 182 SER SER L . n C 3 184 LYS 184 183 183 LYS LYS L . n C 3 185 ALA 185 184 184 ALA ALA L . n C 3 186 ASP 186 185 185 ASP ASP L . n C 3 187 TYR 187 186 186 TYR TYR L . n C 3 188 GLU 188 187 187 GLU GLU L . n C 3 189 LYS 189 188 188 LYS LYS L . n C 3 190 HIS 190 189 189 HIS HIS L . n C 3 191 LYS 191 190 190 LYS LYS L . n C 3 192 VAL 192 191 191 VAL VAL L . n C 3 193 TYR 193 192 192 TYR TYR L . n C 3 194 ALA 194 193 193 ALA ALA L . n C 3 195 CYS 195 194 194 CYS CYS L . n C 3 196 GLU 196 195 195 GLU GLU L . n C 3 197 VAL 197 196 196 VAL VAL L . n C 3 198 THR 198 197 197 THR THR L . n C 3 199 HIS 199 198 198 HIS HIS L . n C 3 200 GLN 200 199 199 GLN GLN L . n C 3 201 GLY 201 200 200 GLY GLY L . n C 3 202 LEU 202 201 201 LEU LEU L . n C 3 203 SER 203 202 202 SER SER L . n C 3 204 SER 204 203 203 SER SER L . n C 3 205 PRO 205 204 204 PRO PRO L . n C 3 206 VAL 206 205 205 VAL VAL L . n C 3 207 THR 207 206 206 THR THR L . n C 3 208 LYS 208 207 207 LYS LYS L . n C 3 209 SER 209 208 208 SER SER L . n C 3 210 PHE 210 209 209 PHE PHE L . n C 3 211 ASN 211 210 210 ASN ASN L . n C 3 212 ARG 212 211 211 ARG ARG L . n C 3 213 GLY 213 212 212 GLY GLY L . n C 3 214 GLU 214 213 ? ? ? L . n C 3 215 CYS 215 214 ? ? ? L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 601 1 CA CA A . E 5 HOH 1 701 43 HOH HOH A . E 5 HOH 2 702 33 HOH HOH A . E 5 HOH 3 703 8 HOH HOH A . E 5 HOH 4 704 27 HOH HOH A . E 5 HOH 5 705 35 HOH HOH A . E 5 HOH 6 706 40 HOH HOH A . E 5 HOH 7 707 31 HOH HOH A . E 5 HOH 8 708 26 HOH HOH A . E 5 HOH 9 709 22 HOH HOH A . E 5 HOH 10 710 29 HOH HOH A . E 5 HOH 11 711 32 HOH HOH A . E 5 HOH 12 712 24 HOH HOH A . E 5 HOH 13 713 28 HOH HOH A . E 5 HOH 14 714 21 HOH HOH A . E 5 HOH 15 715 34 HOH HOH A . E 5 HOH 16 716 25 HOH HOH A . E 5 HOH 17 717 42 HOH HOH A . E 5 HOH 18 718 30 HOH HOH A . E 5 HOH 19 719 38 HOH HOH A . E 5 HOH 20 720 37 HOH HOH A . E 5 HOH 21 721 36 HOH HOH A . E 5 HOH 22 722 9 HOH HOH A . E 5 HOH 23 723 41 HOH HOH A . E 5 HOH 24 724 23 HOH HOH A . F 5 HOH 1 301 4 HOH HOH H . F 5 HOH 2 302 1 HOH HOH H . F 5 HOH 3 303 7 HOH HOH H . F 5 HOH 4 304 10 HOH HOH H . F 5 HOH 5 305 6 HOH HOH H . F 5 HOH 6 306 5 HOH HOH H . F 5 HOH 7 307 3 HOH HOH H . F 5 HOH 8 308 2 HOH HOH H . G 5 HOH 1 301 13 HOH HOH L . G 5 HOH 2 302 20 HOH HOH L . G 5 HOH 3 303 16 HOH HOH L . G 5 HOH 4 304 15 HOH HOH L . G 5 HOH 5 305 14 HOH HOH L . G 5 HOH 6 306 12 HOH HOH L . G 5 HOH 7 307 39 HOH HOH L . G 5 HOH 8 308 19 HOH HOH L . G 5 HOH 9 309 17 HOH HOH L . G 5 HOH 10 310 18 HOH HOH L . G 5 HOH 11 311 11 HOH HOH L . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8VGP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VGP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8VGP _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.010 ? 5128 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.017 ? 6959 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 14.341 ? 1818 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.063 ? 750 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.021 ? 890 ? f_plane_restr ? ? # _struct.entry_id 8VGP _struct.title 'CryoEM structure of Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VGP _struct_keywords.text 'fab, antigen binding fragment, protein engineering, CYTOKINE-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'CYTOKINE/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP ANGP2_HUMAN O15123 O15123-2 1 ;EQISFRDCAEVFKSGHTTNGIYTLTFPNSTEEIKAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVGFGNPSGEYWLG NEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKCICK CSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIRPADF ; 225 2 PDB 8VGP 8VGP ? 2 ? 1 3 PDB 8VGP 8VGP ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8VGP A 4 ? 223 ? O15123 225 ? 444 ? 277 496 2 2 8VGP H 1 ? 236 ? 8VGP 1 ? 233 ? 1 233 3 3 8VGP L 1 ? 215 ? 8VGP 1 ? 214 ? 1 214 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8VGP ALA A 1 ? UNP O15123 ? ? 'expression tag' 274 1 1 8VGP GLY A 2 ? UNP O15123 ? ? 'expression tag' 275 2 1 8VGP SER A 3 ? UNP O15123 ? ? 'expression tag' 276 3 1 8VGP GLY A 224 ? UNP O15123 ? ? 'expression tag' 497 4 1 8VGP ASN A 225 ? UNP O15123 ? ? 'expression tag' 498 5 1 8VGP SER A 226 ? UNP O15123 ? ? 'expression tag' 499 6 1 8VGP HIS A 227 ? UNP O15123 ? ? 'expression tag' 500 7 1 8VGP HIS A 228 ? UNP O15123 ? ? 'expression tag' 501 8 1 8VGP HIS A 229 ? UNP O15123 ? ? 'expression tag' 502 9 1 8VGP HIS A 230 ? UNP O15123 ? ? 'expression tag' 503 10 1 8VGP HIS A 231 ? UNP O15123 ? ? 'expression tag' 504 11 1 8VGP HIS A 232 ? UNP O15123 ? ? 'expression tag' 505 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 10 ? SER A 17 ? ASP A 283 SER A 290 1 ? 8 HELX_P HELX_P2 AA2 GLU A 43 ? GLY A 47 ? GLU A 316 GLY A 320 5 ? 5 HELX_P HELX_P3 AA3 THR A 65 ? GLY A 72 ? THR A 338 GLY A 345 1 ? 8 HELX_P HELX_P4 AA4 GLY A 83 ? ASN A 92 ? GLY A 356 ASN A 365 1 ? 10 HELX_P HELX_P5 AA5 SER A 121 ? ASN A 125 ? SER A 394 ASN A 398 5 ? 5 HELX_P HELX_P6 AA6 LYS A 163 ? LEU A 168 ? LYS A 436 LEU A 441 1 ? 6 HELX_P HELX_P7 AA7 TYR A 202 ? GLY A 206 ? TYR A 475 GLY A 479 1 ? 5 HELX_P HELX_P8 AA8 THR B 28 ? TYR B 32 ? THR H 28 TYR H 32 5 ? 5 HELX_P HELX_P9 AA9 THR B 74 ? LYS B 76 ? THR H 73 LYS H 75 5 ? 3 HELX_P HELX_P10 AB1 ARG B 87 ? THR B 91 ? ARG H 83 THR H 87 5 ? 5 HELX_P HELX_P11 AB2 SER B 164 ? ALA B 166 ? SER H 161 ALA H 163 5 ? 3 HELX_P HELX_P12 AB3 SER B 195 ? LEU B 197 ? SER H 192 LEU H 194 5 ? 3 HELX_P HELX_P13 AB4 PRO B 210 ? ASN B 212 ? PRO H 207 ASN H 209 5 ? 3 HELX_P HELX_P14 AB5 SER C 30 ? PHE C 32 ? SER L 29 PHE L 31 5 ? 3 HELX_P HELX_P15 AB6 GLN C 80 ? PHE C 84 ? GLN L 79 PHE L 83 5 ? 5 HELX_P HELX_P16 AB7 SER C 122 ? LYS C 127 ? SER L 121 LYS L 126 1 ? 6 HELX_P HELX_P17 AB8 LYS C 184 ? GLU C 188 ? LYS L 183 GLU L 187 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 284 A CYS 313 1_555 ? ? ? ? ? ? ? 2.018 ? ? disulf2 disulf ? ? A CYS 160 SG ? ? ? 1_555 A CYS 162 SG ? ? A CYS 433 A CYS 435 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? A CYS 164 SG ? ? ? 1_555 A CYS 177 SG ? ? A CYS 437 A CYS 450 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf4 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 154 SG ? ? H CYS 11 H CYS 151 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 92 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf6 disulf ? ? B CYS 115 SG ? ? ? 1_555 B CYS 156 SG ? ? H CYS 108 H CYS 153 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf7 disulf ? ? B CYS 129 SG ? ? ? 1_555 C CYS 125 SG ? ? H CYS 126 L CYS 124 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf8 disulf ? ? B CYS 144 SG ? ? ? 1_555 C CYS 117 SG ? ? H CYS 141 L CYS 116 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf9 disulf ? ? B CYS 147 SG ? ? ? 1_555 B CYS 204 SG ? ? H CYS 144 H CYS 201 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf10 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 89 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf11 disulf ? ? C CYS 41 SG ? ? ? 1_555 C CYS 166 SG ? ? L CYS 40 L CYS 165 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf12 disulf ? ? C CYS 81 SG ? ? ? 1_555 C CYS 172 SG ? ? L CYS 80 L CYS 171 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf13 disulf ? ? C CYS 135 SG ? ? ? 1_555 C CYS 195 SG ? ? L CYS 134 L CYS 194 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc1 metalc ? ? A ASP 156 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 429 A CA 601 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc2 metalc ? ? A ASP 156 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 429 A CA 601 1_555 ? ? ? ? ? ? ? 2.971 ? ? metalc3 metalc ? ? A ASP 158 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 431 A CA 601 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc4 metalc ? ? A CYS 160 O ? ? ? 1_555 D CA . CA ? ? A CYS 433 A CA 601 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc5 metalc ? ? A CYS 162 O ? ? ? 1_555 D CA . CA ? ? A CYS 435 A CA 601 1_555 ? ? ? ? ? ? ? 2.518 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 156 ? A ASP 429 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD2 ? A ASP 156 ? A ASP 429 ? 1_555 45.5 ? 2 OD1 ? A ASP 156 ? A ASP 429 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD1 ? A ASP 158 ? A ASP 431 ? 1_555 84.3 ? 3 OD2 ? A ASP 156 ? A ASP 429 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD1 ? A ASP 158 ? A ASP 431 ? 1_555 126.8 ? 4 OD1 ? A ASP 156 ? A ASP 429 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A CYS 160 ? A CYS 433 ? 1_555 166.3 ? 5 OD2 ? A ASP 156 ? A ASP 429 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A CYS 160 ? A CYS 433 ? 1_555 147.5 ? 6 OD1 ? A ASP 158 ? A ASP 431 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A CYS 160 ? A CYS 433 ? 1_555 82.1 ? 7 OD1 ? A ASP 156 ? A ASP 429 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A CYS 162 ? A CYS 435 ? 1_555 102.5 ? 8 OD2 ? A ASP 156 ? A ASP 429 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A CYS 162 ? A CYS 435 ? 1_555 86.2 ? 9 OD1 ? A ASP 158 ? A ASP 431 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A CYS 162 ? A CYS 435 ? 1_555 90.2 ? 10 O ? A CYS 160 ? A CYS 433 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A CYS 162 ? A CYS 435 ? 1_555 78.3 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 11 ? CYS A 40 ? CYS A 284 ? 1_555 CYS A 313 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 160 ? CYS A 162 ? CYS A 433 ? 1_555 CYS A 435 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 164 ? CYS A 177 ? CYS A 437 ? 1_555 CYS A 450 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 11 ? CYS B 154 ? CYS H 11 ? 1_555 CYS H 151 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 22 ? CYS B 96 ? CYS H 22 ? 1_555 CYS H 92 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 115 ? CYS B 156 ? CYS H 108 ? 1_555 CYS H 153 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS B 129 ? CYS C 125 ? CYS H 126 ? 1_555 CYS L 124 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS B 144 ? CYS C 117 ? CYS H 141 ? 1_555 CYS L 116 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS B 147 ? CYS B 204 ? CYS H 144 ? 1_555 CYS H 201 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS C 23 ? CYS C 89 ? CYS L 23 ? 1_555 CYS L 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS C 41 ? CYS C 166 ? CYS L 40 ? 1_555 CYS L 165 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS C 81 ? CYS C 172 ? CYS L 80 ? 1_555 CYS L 171 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS C 135 ? CYS C 195 ? CYS L 134 ? 1_555 CYS L 194 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 145 A . ? GLN 418 A PRO 146 A ? PRO 419 A 1 -5.64 2 ALA 176 A . ? ALA 449 A CYS 177 A ? CYS 450 A 1 -9.42 3 SER 95 C . ? SER 94 L PRO 96 C ? PRO 95 L 1 -3.90 4 TYR 141 C . ? TYR 140 L PRO 142 C ? PRO 141 L 1 -3.49 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 6 ? AB3 ? 4 ? AB4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB2 1 2 ? parallel AB2 2 3 ? anti-parallel AB2 3 4 ? anti-parallel AB2 4 5 ? anti-parallel AB2 5 6 ? anti-parallel AB3 1 2 ? anti-parallel AB3 2 3 ? anti-parallel AB3 3 4 ? anti-parallel AB4 1 2 ? anti-parallel AB4 2 3 ? anti-parallel AB4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 23 ? THR A 28 ? GLY A 296 THR A 301 AA1 2 GLU A 35 ? ASP A 41 ? GLU A 308 ASP A 314 AA1 3 TRP A 49 ? ARG A 55 ? TRP A 322 ARG A 328 AA1 4 ALA A 213 ? PRO A 220 ? ALA A 486 PRO A 493 AA1 5 TYR A 96 ? LYS A 103 ? TYR A 369 LYS A 376 AA1 6 GLU A 109 ? LEU A 119 ? GLU A 382 LEU A 392 AA1 7 ILE A 128 ? LYS A 131 ? ILE A 401 LYS A 404 AA2 1 PHE A 73 ? GLY A 74 ? PHE A 346 GLY A 347 AA2 2 TYR A 80 ? TRP A 81 ? TYR A 353 TRP A 354 AA2 3 TRP A 49 ? ARG A 55 ? TRP A 322 ARG A 328 AA2 4 ALA A 213 ? PRO A 220 ? ALA A 486 PRO A 493 AA2 5 TYR A 96 ? LYS A 103 ? TYR A 369 LYS A 376 AA2 6 GLU A 109 ? LEU A 119 ? GLU A 382 LEU A 392 AA2 7 THR A 134 ? GLY A 135 ? THR A 407 GLY A 408 AA3 1 SER A 180 ? ASN A 181 ? SER A 453 ASN A 454 AA3 2 LYS A 200 ? TRP A 201 ? LYS A 473 TRP A 474 AA4 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7 AA4 2 LEU B 18 ? SER B 25 ? LEU H 18 SER H 25 AA4 3 THR B 78 ? MET B 83 ? THR H 77 MET H 82 AA4 4 THR B 69 ? ASP B 73 ? THR H 68 ASP H 72 AA5 1 CYS B 11 ? VAL B 12 ? CYS H 11 VAL H 12 AA5 2 THR B 114 ? VAL B 118 ? THR H 107 VAL H 111 AA5 3 ALA B 92 ? VAL B 100 ? ALA H 88 VAL H 96 AA5 4 TRP B 33 ? GLN B 39 ? TRP H 33 GLN H 39 AA5 5 LEU B 45 ? THR B 52 ? LEU H 45 THR H 52 AA5 6 TYR B 57 ? TYR B 60 ? TYR H 56 TYR H 59 AA6 1 CYS B 11 ? VAL B 12 ? CYS H 11 VAL H 12 AA6 2 THR B 114 ? VAL B 118 ? THR H 107 VAL H 111 AA6 3 ALA B 92 ? VAL B 100 ? ALA H 88 VAL H 96 AA6 4 ALA B 106 B TRP B 110 ? ALA H 100 TRP H 103 AA7 1 SER B 127 ? SER B 134 ? SER H 124 SER H 131 AA7 2 THR B 142 ? TYR B 152 ? THR H 139 TYR H 149 AA7 3 TYR B 184 ? PRO B 193 ? TYR H 181 PRO H 190 AA7 4 VAL B 171 ? THR B 173 ? VAL H 168 THR H 170 AA8 1 SER B 127 ? SER B 134 ? SER H 124 SER H 131 AA8 2 THR B 142 ? TYR B 152 ? THR H 139 TYR H 149 AA8 3 TYR B 184 ? PRO B 193 ? TYR H 181 PRO H 190 AA8 4 VAL B 177 ? LEU B 178 ? VAL H 174 LEU H 175 AA9 1 VAL B 158 ? TRP B 162 ? VAL H 155 TRP H 159 AA9 2 ILE B 203 ? HIS B 208 ? ILE H 200 HIS H 205 AA9 3 THR B 213 ? LYS B 218 ? THR H 210 LYS H 215 AB1 1 MET C 4 ? GLN C 6 ? MET L 4 GLN L 6 AB1 2 VAL C 19 ? LEU C 29 ? VAL L 19 LEU L 28 AB1 3 PHE C 63 ? ILE C 76 ? PHE L 62 ILE L 75 AB2 1 SER C 10 ? SER C 14 ? SER L 10 SER L 14 AB2 2 THR C 103 ? LYS C 108 ? THR L 102 LYS L 107 AB2 3 THR C 86 ? GLN C 91 ? THR L 85 GLN L 90 AB2 4 VAL C 34 ? GLN C 39 ? VAL L 33 GLN L 38 AB2 5 LYS C 46 ? TYR C 50 ? LYS L 45 TYR L 49 AB2 6 SER C 54 ? LEU C 55 ? SER L 53 LEU L 54 AB3 1 SER C 115 ? PHE C 119 ? SER L 114 PHE L 118 AB3 2 THR C 130 ? PHE C 140 ? THR L 129 PHE L 139 AB3 3 TYR C 174 ? SER C 183 ? TYR L 173 SER L 182 AB3 4 SER C 160 ? VAL C 164 ? SER L 159 VAL L 163 AB4 1 ALA C 154 ? LEU C 155 ? ALA L 153 LEU L 154 AB4 2 LYS C 146 ? VAL C 151 ? LYS L 145 VAL L 150 AB4 3 VAL C 192 ? THR C 198 ? VAL L 191 THR L 197 AB4 4 VAL C 206 ? ASN C 211 ? VAL L 205 ASN L 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 27 ? N LEU A 300 O ILE A 36 ? O ILE A 309 AA1 2 3 N ASP A 41 ? N ASP A 314 O TRP A 49 ? O TRP A 322 AA1 3 4 N THR A 50 ? N THR A 323 O ILE A 218 ? O ILE A 491 AA1 4 5 O THR A 215 ? O THR A 488 N HIS A 101 ? N HIS A 374 AA1 5 6 N LEU A 102 ? N LEU A 375 O ALA A 110 ? O ALA A 383 AA1 6 7 N TYR A 118 ? N TYR A 391 O HIS A 129 ? O HIS A 402 AA2 1 2 N PHE A 73 ? N PHE A 346 O TRP A 81 ? O TRP A 354 AA2 2 3 O TYR A 80 ? O TYR A 353 N ARG A 54 ? N ARG A 327 AA2 3 4 N THR A 50 ? N THR A 323 O ILE A 218 ? O ILE A 491 AA2 4 5 O THR A 215 ? O THR A 488 N HIS A 101 ? N HIS A 374 AA2 5 6 N LEU A 102 ? N LEU A 375 O ALA A 110 ? O ALA A 383 AA2 6 7 N LEU A 113 ? N LEU A 386 O THR A 134 ? O THR A 407 AA3 1 2 N ASN A 181 ? N ASN A 454 O LYS A 200 ? O LYS A 473 AA4 1 2 N SER B 7 ? N SER H 7 O SER B 21 ? O SER H 21 AA4 2 3 N LEU B 18 ? N LEU H 18 O MET B 83 ? O MET H 82 AA4 3 4 O THR B 78 ? O THR H 77 N ASP B 73 ? N ASP H 72 AA5 1 2 N VAL B 12 ? N VAL H 12 O THR B 117 ? O THR H 110 AA5 2 3 O THR B 114 ? O THR H 107 N TYR B 94 ? N TYR H 90 AA5 3 4 O TYR B 95 ? O TYR H 91 N VAL B 37 ? N VAL H 37 AA5 4 5 N ARG B 38 ? N ARG H 38 O GLU B 46 ? O GLU H 46 AA5 5 6 N THR B 52 ? N THR H 52 O TYR B 57 ? O TYR H 56 AA6 1 2 N VAL B 12 ? N VAL H 12 O THR B 117 ? O THR H 110 AA6 2 3 O THR B 114 ? O THR H 107 N TYR B 94 ? N TYR H 90 AA6 3 4 N ARG B 98 ? N ARG H 94 O TYR B 109 ? O TYR H 102 AA7 1 2 N CYS B 129 ? N CYS H 126 O LEU B 148 ? O LEU H 145 AA7 2 3 N LEU B 145 ? N LEU H 142 O VAL B 190 ? O VAL H 187 AA7 3 4 O VAL B 189 ? O VAL H 186 N HIS B 172 ? N HIS H 169 AA8 1 2 N CYS B 129 ? N CYS H 126 O LEU B 148 ? O LEU H 145 AA8 2 3 N LEU B 145 ? N LEU H 142 O VAL B 190 ? O VAL H 187 AA8 3 4 O SER B 185 ? O SER H 182 N VAL B 177 ? N VAL H 174 AA9 1 2 N SER B 161 ? N SER H 158 O ASN B 205 ? O ASN H 202 AA9 2 3 N HIS B 208 ? N HIS H 205 O THR B 213 ? O THR H 210 AB1 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24 AB1 2 3 N ILE C 21 ? N ILE L 21 O LEU C 74 ? O LEU L 73 AB2 1 2 N LEU C 11 ? N LEU L 11 O GLU C 106 ? O GLU L 105 AB2 2 3 O THR C 103 ? O THR L 102 N TYR C 87 ? N TYR L 86 AB2 3 4 O TYR C 88 ? O TYR L 87 N TYR C 37 ? N TYR L 36 AB2 4 5 N TRP C 36 ? N TRP L 35 O LEU C 48 ? O LEU L 47 AB2 5 6 N TYR C 50 ? N TYR L 49 O SER C 54 ? O SER L 53 AB3 1 2 N PHE C 119 ? N PHE L 118 O VAL C 134 ? O VAL L 133 AB3 2 3 N VAL C 133 ? N VAL L 132 O LEU C 180 ? O LEU L 179 AB3 3 4 O SER C 177 ? O SER L 176 N SER C 163 ? N SER L 162 AB4 1 2 O ALA C 154 ? O ALA L 153 N VAL C 151 ? N VAL L 150 AB4 2 3 N GLN C 148 ? N GLN L 147 O GLU C 196 ? O GLU L 195 AB4 3 4 N CYS C 195 ? N CYS L 194 O LYS C 208 ? O LYS L 207 # _pdbx_entry_details.entry_id 8VGP _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLY 451 ? ? O A HOH 701 ? ? 2.15 2 1 O A HOH 714 ? ? O A HOH 722 ? ? 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 L _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 73 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 L _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 73 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 L _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 73 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.30 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.00 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 305 ? ? -176.43 -176.51 2 1 GLU A 329 ? ? -143.90 -47.61 3 1 ASP A 330 ? ? -145.43 -3.82 4 1 SER A 393 ? ? -59.31 170.18 5 1 ASP A 448 ? ? 60.24 -124.74 6 1 ASN A 454 ? ? -164.06 97.30 7 1 ILE A 472 ? ? -66.32 99.77 8 1 CYS H 151 ? ? 72.42 73.41 9 1 CYS H 153 ? ? 105.54 -69.88 10 1 PRO H 154 ? ? -79.07 48.50 11 1 ALA L 51 ? ? 63.78 -27.57 12 1 ASN L 152 ? ? 71.15 -8.02 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 400 ? A 0.231 'SIDE CHAIN' 2 1 ARG H 19 ? A 0.240 'SIDE CHAIN' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8VGP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 4ZFG _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 4ZFG _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8VGP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 1017611 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 'MULTIPLE SOURCES' COMPLEX 'Angiopoietin-2 in complex with Fab 5A12.6DS' ? ? ? 1,2,3 2 1 RECOMBINANT COMPLEX Angiopoietin-2 ? ? ? 1 3 1 RECOMBINANT COMPLEX 'Fab 5A12.6DS' ? ? ? 2,3 # _em_imaging.entry_id 8VGP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R0.6/1' _em_sample_support.details ;The peak fraction was subjected to mild crosslinking with 0.5 mM BS3 at room temperature for 10 min. The crosslinking reaction was quenched by addition of 100mM Tris pH 7.5. ; _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8VGP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8VGP _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8VGP _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 274 ? A ALA 1 2 1 Y 1 A GLY 275 ? A GLY 2 3 1 Y 1 A SER 276 ? A SER 3 4 1 Y 1 A GLU 277 ? A GLU 4 5 1 Y 1 A GLN 278 ? A GLN 5 6 1 Y 1 A GLY 497 ? A GLY 224 7 1 Y 1 A ASN 498 ? A ASN 225 8 1 Y 1 A SER 499 ? A SER 226 9 1 Y 1 A HIS 500 ? A HIS 227 10 1 Y 1 A HIS 501 ? A HIS 228 11 1 Y 1 A HIS 502 ? A HIS 229 12 1 Y 1 A HIS 503 ? A HIS 230 13 1 Y 1 A HIS 504 ? A HIS 231 14 1 Y 1 A HIS 505 ? A HIS 232 15 1 Y 1 H LYS 133 ? B LYS 136 16 1 Y 1 H SER 134 ? B SER 137 17 1 Y 1 H THR 135 ? B THR 138 18 1 Y 1 H SER 136 ? B SER 139 19 1 Y 1 H LYS 219 ? B LYS 222 20 1 Y 1 H SER 220 ? B SER 223 21 1 Y 1 H CYS 221 ? B CYS 224 22 1 Y 1 H ASP 222 ? B ASP 225 23 1 Y 1 H LYS 223 ? B LYS 226 24 1 Y 1 H THR 224 ? B THR 227 25 1 Y 1 H HIS 225 ? B HIS 228 26 1 Y 1 H THR 226 ? B THR 229 27 1 Y 1 H HIS 227 ? B HIS 230 28 1 Y 1 H HIS 228 ? B HIS 231 29 1 Y 1 H HIS 229 ? B HIS 232 30 1 Y 1 H HIS 230 ? B HIS 233 31 1 Y 1 H HIS 231 ? B HIS 234 32 1 Y 1 H HIS 232 ? B HIS 235 33 1 Y 1 H PRO 233 ? B PRO 236 34 1 Y 1 L GLU 213 ? C GLU 214 35 1 Y 1 L CYS 214 ? C CYS 215 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _em_admin.current_status REL _em_admin.deposition_date 2023-12-27 _em_admin.deposition_site RCSB _em_admin.entry_id 8VGP _em_admin.last_update 2024-10-30 _em_admin.map_release_date 2024-10-30 _em_admin.title 'CryoEM structure of Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM ? 1 Tris 1 150 mM NaCl 2 'sodium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 2 3 9606 'Homo sapiens' ? ? ? ? ? ? ? 3 4 9606 'Homo sapiens' ? ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain ? 2 3 7111 'Trichoplusia ni' ? ? ? 3 4 10029 'Cricetulus griseus' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 68.5 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ISOLDE ? 'MODEL FITTING' ? 8 ? 1 ? 'UCSF ChimeraX' ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX 1.21rc1_5049 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4ZFG # _atom_sites.entry_id 8VGP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O S # loop_