data_8VGQ # _entry.id 8VGQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VGQ pdb_00008vgq 10.2210/pdb8vgq/pdb WWPDB D_1000280187 ? ? EMDB EMD-43221 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VGQ _pdbx_database_status.recvd_initial_deposition_date 2023-12-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CryoEM structure of GNE-1952-alkylated KRAS G12C in complex with engineered conformationally rigid Fab 2H11.4DS' _pdbx_database_related.db_id EMD-43221 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email sudhamsu.jawahar@gene.com _pdbx_contact_author.name_first Jawahar _pdbx_contact_author.name_last Sudhamsu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0737-2299 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kung, J.E.' 1 0000-0002-6784-7076 'Sudhamsu, J.' 2 0000-0003-0737-2299 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2024.05.10.593593 _citation.pdbx_database_id_PubMed 38798381 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kung, J.E.' 1 0000-0002-6784-7076 primary 'Johnson, M.C.' 2 0000-0002-1477-7801 primary 'Jao, C.C.' 3 ? primary 'Arthur, C.P.' 4 ? primary 'Tegunov, D.' 5 0000-0001-7019-3221 primary 'Rohou, A.' 6 0000-0002-3343-9621 primary 'Sudhamsu, J.' 7 0000-0003-0737-2299 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPase KRas' 19352.785 1 ? 'G12C, C51S, C80L, C118S' ? ? 2 polymer man 'Fab 2H11.4DS heavy chain' 25318.248 1 ? ? ? ? 3 polymer man 'Fab 2H11.4DS light chain' 22977.490 1 ? ? ? ? 4 non-polymer syn '1-{4-[(7M)-6-methyl-7-(5-methyl-2H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one' 414.503 1 ? ? ? ? 5 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 6 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 7 water nat water 18.015 40 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'K-Ras 2,Ki-Ras,c-K-ras,c-Ki-ras' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK ; ;GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK ; A ? 2 'polypeptide(L)' no no ;EVQLQESGPGCVKPPGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGSTNYNPSLKSRVTISVDKSKNQFS LKLSSVTAADTAVYYCARGSSSWYDLGPFDYWGQGTCVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFCECPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTHHHHHHP ; ;EVQLQESGPGCVKPPGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGSTNYNPSLKSRVTISVDKSKNQFS LKLSSVTAADTAVYYCARGSSSWYDLGPFDYWGQGTCVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFCECPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTHHHHHHP ; H ? 3 'polypeptide(L)' no no ;SVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLCGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRC EDEADYYCAAWDERLSGWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA GVETTTPSCQSNCNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS ; ;SVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLCGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRC EDEADYYCAAWDERLSGWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA GVETTTPSCQSNCNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS ; L ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '1-{4-[(7M)-6-methyl-7-(5-methyl-2H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one' A1AAW 5 "GUANOSINE-5'-DIPHOSPHATE" GDP 6 'MAGNESIUM ION' MG 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 THR n 1 4 GLU n 1 5 TYR n 1 6 LYS n 1 7 LEU n 1 8 VAL n 1 9 VAL n 1 10 VAL n 1 11 GLY n 1 12 ALA n 1 13 CYS n 1 14 GLY n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 SER n 1 19 ALA n 1 20 LEU n 1 21 THR n 1 22 ILE n 1 23 GLN n 1 24 LEU n 1 25 ILE n 1 26 GLN n 1 27 ASN n 1 28 HIS n 1 29 PHE n 1 30 VAL n 1 31 ASP n 1 32 GLU n 1 33 TYR n 1 34 ASP n 1 35 PRO n 1 36 THR n 1 37 ILE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 TYR n 1 42 ARG n 1 43 LYS n 1 44 GLN n 1 45 VAL n 1 46 VAL n 1 47 ILE n 1 48 ASP n 1 49 GLY n 1 50 GLU n 1 51 THR n 1 52 SER n 1 53 LEU n 1 54 LEU n 1 55 ASP n 1 56 ILE n 1 57 LEU n 1 58 ASP n 1 59 THR n 1 60 ALA n 1 61 GLY n 1 62 GLN n 1 63 GLU n 1 64 GLU n 1 65 TYR n 1 66 SER n 1 67 ALA n 1 68 MET n 1 69 ARG n 1 70 ASP n 1 71 GLN n 1 72 TYR n 1 73 MET n 1 74 ARG n 1 75 THR n 1 76 GLY n 1 77 GLU n 1 78 GLY n 1 79 PHE n 1 80 LEU n 1 81 LEU n 1 82 VAL n 1 83 PHE n 1 84 ALA n 1 85 ILE n 1 86 ASN n 1 87 ASN n 1 88 THR n 1 89 LYS n 1 90 SER n 1 91 PHE n 1 92 GLU n 1 93 ASP n 1 94 ILE n 1 95 HIS n 1 96 HIS n 1 97 TYR n 1 98 ARG n 1 99 GLU n 1 100 GLN n 1 101 ILE n 1 102 LYS n 1 103 ARG n 1 104 VAL n 1 105 LYS n 1 106 ASP n 1 107 SER n 1 108 GLU n 1 109 ASP n 1 110 VAL n 1 111 PRO n 1 112 MET n 1 113 VAL n 1 114 LEU n 1 115 VAL n 1 116 GLY n 1 117 ASN n 1 118 LYS n 1 119 SER n 1 120 ASP n 1 121 LEU n 1 122 PRO n 1 123 SER n 1 124 ARG n 1 125 THR n 1 126 VAL n 1 127 ASP n 1 128 THR n 1 129 LYS n 1 130 GLN n 1 131 ALA n 1 132 GLN n 1 133 ASP n 1 134 LEU n 1 135 ALA n 1 136 ARG n 1 137 SER n 1 138 TYR n 1 139 GLY n 1 140 ILE n 1 141 PRO n 1 142 PHE n 1 143 ILE n 1 144 GLU n 1 145 THR n 1 146 SER n 1 147 ALA n 1 148 LYS n 1 149 THR n 1 150 ARG n 1 151 GLN n 1 152 GLY n 1 153 VAL n 1 154 ASP n 1 155 ASP n 1 156 ALA n 1 157 PHE n 1 158 TYR n 1 159 THR n 1 160 LEU n 1 161 VAL n 1 162 ARG n 1 163 GLU n 1 164 ILE n 1 165 ARG n 1 166 LYS n 1 167 HIS n 1 168 LYS n 1 169 GLU n 1 170 LYS n 2 1 GLU n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 GLN n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLY n 2 11 CYS n 2 12 VAL n 2 13 LYS n 2 14 PRO n 2 15 PRO n 2 16 GLY n 2 17 THR n 2 18 LEU n 2 19 SER n 2 20 LEU n 2 21 THR n 2 22 CYS n 2 23 ALA n 2 24 VAL n 2 25 SER n 2 26 GLY n 2 27 GLY n 2 28 SER n 2 29 ILE n 2 30 SER n 2 31 SER n 2 32 SER n 2 33 ASN n 2 34 TRP n 2 35 TRP n 2 36 SER n 2 37 TRP n 2 38 VAL n 2 39 ARG n 2 40 GLN n 2 41 PRO n 2 42 PRO n 2 43 GLY n 2 44 LYS n 2 45 GLY n 2 46 LEU n 2 47 GLU n 2 48 TRP n 2 49 ILE n 2 50 GLY n 2 51 GLU n 2 52 ILE n 2 53 TYR n 2 54 HIS n 2 55 SER n 2 56 GLY n 2 57 SER n 2 58 THR n 2 59 ASN n 2 60 TYR n 2 61 ASN n 2 62 PRO n 2 63 SER n 2 64 LEU n 2 65 LYS n 2 66 SER n 2 67 ARG n 2 68 VAL n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 VAL n 2 73 ASP n 2 74 LYS n 2 75 SER n 2 76 LYS n 2 77 ASN n 2 78 GLN n 2 79 PHE n 2 80 SER n 2 81 LEU n 2 82 LYS n 2 83 LEU n 2 84 SER n 2 85 SER n 2 86 VAL n 2 87 THR n 2 88 ALA n 2 89 ALA n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ARG n 2 99 GLY n 2 100 SER n 2 101 SER n 2 102 SER n 2 103 TRP n 2 104 TYR n 2 105 ASP n 2 106 LEU n 2 107 GLY n 2 108 PRO n 2 109 PHE n 2 110 ASP n 2 111 TYR n 2 112 TRP n 2 113 GLY n 2 114 GLN n 2 115 GLY n 2 116 THR n 2 117 CYS n 2 118 VAL n 2 119 THR n 2 120 VAL n 2 121 SER n 2 122 SER n 2 123 ALA n 2 124 SER n 2 125 THR n 2 126 LYS n 2 127 GLY n 2 128 PRO n 2 129 SER n 2 130 VAL n 2 131 PHE n 2 132 PRO n 2 133 LEU n 2 134 ALA n 2 135 PRO n 2 136 SER n 2 137 SER n 2 138 LYS n 2 139 SER n 2 140 THR n 2 141 SER n 2 142 GLY n 2 143 GLY n 2 144 THR n 2 145 ALA n 2 146 ALA n 2 147 LEU n 2 148 GLY n 2 149 CYS n 2 150 LEU n 2 151 VAL n 2 152 LYS n 2 153 ASP n 2 154 TYR n 2 155 PHE n 2 156 CYS n 2 157 GLU n 2 158 CYS n 2 159 PRO n 2 160 VAL n 2 161 THR n 2 162 VAL n 2 163 SER n 2 164 TRP n 2 165 ASN n 2 166 SER n 2 167 GLY n 2 168 ALA n 2 169 LEU n 2 170 THR n 2 171 SER n 2 172 GLY n 2 173 VAL n 2 174 HIS n 2 175 THR n 2 176 PHE n 2 177 PRO n 2 178 ALA n 2 179 VAL n 2 180 LEU n 2 181 GLN n 2 182 SER n 2 183 SER n 2 184 GLY n 2 185 LEU n 2 186 TYR n 2 187 SER n 2 188 LEU n 2 189 SER n 2 190 SER n 2 191 VAL n 2 192 VAL n 2 193 THR n 2 194 VAL n 2 195 PRO n 2 196 SER n 2 197 SER n 2 198 SER n 2 199 LEU n 2 200 GLY n 2 201 THR n 2 202 GLN n 2 203 THR n 2 204 TYR n 2 205 ILE n 2 206 CYS n 2 207 ASN n 2 208 VAL n 2 209 ASN n 2 210 HIS n 2 211 LYS n 2 212 PRO n 2 213 SER n 2 214 ASN n 2 215 THR n 2 216 LYS n 2 217 VAL n 2 218 ASP n 2 219 LYS n 2 220 LYS n 2 221 VAL n 2 222 GLU n 2 223 PRO n 2 224 LYS n 2 225 SER n 2 226 CYS n 2 227 ASP n 2 228 LYS n 2 229 THR n 2 230 HIS n 2 231 THR n 2 232 HIS n 2 233 HIS n 2 234 HIS n 2 235 HIS n 2 236 HIS n 2 237 HIS n 2 238 PRO n 3 1 SER n 3 2 VAL n 3 3 LEU n 3 4 THR n 3 5 GLN n 3 6 PRO n 3 7 PRO n 3 8 SER n 3 9 ALA n 3 10 SER n 3 11 GLY n 3 12 THR n 3 13 PRO n 3 14 GLY n 3 15 GLN n 3 16 ARG n 3 17 VAL n 3 18 THR n 3 19 ILE n 3 20 SER n 3 21 CYS n 3 22 SER n 3 23 GLY n 3 24 SER n 3 25 SER n 3 26 SER n 3 27 ASN n 3 28 ILE n 3 29 GLY n 3 30 SER n 3 31 ASN n 3 32 TYR n 3 33 VAL n 3 34 TYR n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 LEU n 3 40 CYS n 3 41 GLY n 3 42 THR n 3 43 ALA n 3 44 PRO n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 ARG n 3 51 ASN n 3 52 ASN n 3 53 GLN n 3 54 ARG n 3 55 PRO n 3 56 SER n 3 57 GLY n 3 58 VAL n 3 59 PRO n 3 60 ASP n 3 61 ARG n 3 62 PHE n 3 63 SER n 3 64 GLY n 3 65 SER n 3 66 LYS n 3 67 SER n 3 68 GLY n 3 69 THR n 3 70 SER n 3 71 ALA n 3 72 SER n 3 73 LEU n 3 74 ALA n 3 75 ILE n 3 76 SER n 3 77 GLY n 3 78 LEU n 3 79 ARG n 3 80 CYS n 3 81 GLU n 3 82 ASP n 3 83 GLU n 3 84 ALA n 3 85 ASP n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 ALA n 3 90 ALA n 3 91 TRP n 3 92 ASP n 3 93 GLU n 3 94 ARG n 3 95 LEU n 3 96 SER n 3 97 GLY n 3 98 TRP n 3 99 VAL n 3 100 PHE n 3 101 GLY n 3 102 GLY n 3 103 GLY n 3 104 THR n 3 105 LYS n 3 106 LEU n 3 107 THR n 3 108 VAL n 3 109 LEU n 3 110 GLY n 3 111 GLN n 3 112 PRO n 3 113 LYS n 3 114 ALA n 3 115 ALA n 3 116 PRO n 3 117 SER n 3 118 VAL n 3 119 THR n 3 120 LEU n 3 121 PHE n 3 122 PRO n 3 123 PRO n 3 124 SER n 3 125 SER n 3 126 GLU n 3 127 GLU n 3 128 LEU n 3 129 GLN n 3 130 ALA n 3 131 ASN n 3 132 LYS n 3 133 ALA n 3 134 THR n 3 135 LEU n 3 136 VAL n 3 137 CYS n 3 138 LEU n 3 139 ILE n 3 140 SER n 3 141 ASP n 3 142 PHE n 3 143 TYR n 3 144 PRO n 3 145 GLY n 3 146 ALA n 3 147 VAL n 3 148 THR n 3 149 VAL n 3 150 ALA n 3 151 TRP n 3 152 LYS n 3 153 ALA n 3 154 ASP n 3 155 SER n 3 156 SER n 3 157 PRO n 3 158 VAL n 3 159 LYS n 3 160 ALA n 3 161 GLY n 3 162 VAL n 3 163 GLU n 3 164 THR n 3 165 THR n 3 166 THR n 3 167 PRO n 3 168 SER n 3 169 CYS n 3 170 GLN n 3 171 SER n 3 172 ASN n 3 173 CYS n 3 174 ASN n 3 175 LYS n 3 176 TYR n 3 177 ALA n 3 178 ALA n 3 179 SER n 3 180 SER n 3 181 TYR n 3 182 LEU n 3 183 SER n 3 184 LEU n 3 185 THR n 3 186 PRO n 3 187 GLU n 3 188 GLN n 3 189 TRP n 3 190 LYS n 3 191 SER n 3 192 HIS n 3 193 ARG n 3 194 SER n 3 195 TYR n 3 196 SER n 3 197 CYS n 3 198 GLN n 3 199 VAL n 3 200 THR n 3 201 HIS n 3 202 GLU n 3 203 GLY n 3 204 SER n 3 205 THR n 3 206 VAL n 3 207 GLU n 3 208 LYS n 3 209 THR n 3 210 VAL n 3 211 ALA n 3 212 PRO n 3 213 THR n 3 214 GLU n 3 215 CYS n 3 216 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 170 human ? 'KRAS, KRAS2, RASK2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 238 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'Chinese hamster' 'Cricetulus griseus' 10029 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 216 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'Chinese hamster' 'Cricetulus griseus' 10029 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1AAW non-polymer . '1-{4-[(7M)-6-methyl-7-(5-methyl-2H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one' ? 'C24 H26 N6 O' 414.503 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 TYR 5 4 4 TYR TYR A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 CYS 13 12 12 CYS CYS A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 HIS 28 27 27 HIS HIS A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 TYR 33 32 32 TYR TYR A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 TYR 41 40 40 TYR TYR A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 GLN 44 43 43 GLN GLN A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 GLN 62 61 61 GLN GLN A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 MET 68 67 67 MET MET A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 MET 73 72 72 MET MET A . n A 1 74 ARG 74 73 73 ARG ARG A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 PHE 79 78 78 PHE PHE A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ASN 86 85 85 ASN ASN A . n A 1 87 ASN 87 86 86 ASN ASN A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 HIS 95 94 94 HIS HIS A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 GLN 100 99 99 GLN GLN A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 MET 112 111 111 MET MET A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ASN 117 116 116 ASN ASN A . n A 1 118 LYS 118 117 117 LYS LYS A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 PRO 122 121 121 PRO PRO A . n A 1 123 SER 123 122 122 SER SER A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 THR 125 124 124 THR THR A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 ASP 127 126 126 ASP ASP A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 LYS 129 128 128 LYS LYS A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 GLN 132 131 131 GLN GLN A . n A 1 133 ASP 133 132 132 ASP ASP A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 SER 137 136 136 SER SER A . n A 1 138 TYR 138 137 137 TYR TYR A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 PHE 142 141 141 PHE PHE A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 THR 145 144 144 THR THR A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 LYS 148 147 147 LYS LYS A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 ARG 150 149 149 ARG ARG A . n A 1 151 GLN 151 150 150 GLN GLN A . n A 1 152 GLY 152 151 151 GLY GLY A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 ASP 154 153 153 ASP ASP A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 ALA 156 155 155 ALA ALA A . n A 1 157 PHE 157 156 156 PHE PHE A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 THR 159 158 158 THR THR A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 VAL 161 160 160 VAL VAL A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 GLU 163 162 162 GLU GLU A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 LYS 166 165 165 LYS LYS A . n A 1 167 HIS 167 166 166 HIS HIS A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 GLU 169 168 ? ? ? A . n A 1 170 LYS 170 169 ? ? ? A . n B 2 1 GLU 1 1 1 GLU GLU H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 GLN 5 5 5 GLN GLN H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 CYS 11 11 11 CYS CYS H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 LYS 13 13 13 LYS LYS H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 PRO 15 15 15 PRO PRO H . n B 2 16 GLY 16 16 16 GLY GLY H . n B 2 17 THR 17 17 17 THR THR H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 SER 19 19 19 SER SER H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 THR 21 21 21 THR THR H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 ALA 23 23 23 ALA ALA H . n B 2 24 VAL 24 24 24 VAL VAL H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 GLY 27 27 27 GLY GLY H . n B 2 28 SER 28 28 28 SER SER H . n B 2 29 ILE 29 29 29 ILE ILE H . n B 2 30 SER 30 30 30 SER SER H . n B 2 31 SER 31 31 31 SER SER H . n B 2 32 SER 32 32 32 SER SER H . n B 2 33 ASN 33 33 33 ASN ASN H . n B 2 34 TRP 34 34 34 TRP TRP H . n B 2 35 TRP 35 35 35 TRP TRP H . n B 2 36 SER 36 35 35 SER SER H A n B 2 37 TRP 37 36 36 TRP TRP H . n B 2 38 VAL 38 37 37 VAL VAL H . n B 2 39 ARG 39 38 38 ARG ARG H . n B 2 40 GLN 40 39 39 GLN GLN H . n B 2 41 PRO 41 40 40 PRO PRO H . n B 2 42 PRO 42 41 41 PRO PRO H . n B 2 43 GLY 43 42 42 GLY GLY H . n B 2 44 LYS 44 43 43 LYS LYS H . n B 2 45 GLY 45 44 44 GLY GLY H . n B 2 46 LEU 46 45 45 LEU LEU H . n B 2 47 GLU 47 46 46 GLU GLU H . n B 2 48 TRP 48 47 47 TRP TRP H . n B 2 49 ILE 49 48 48 ILE ILE H . n B 2 50 GLY 50 49 49 GLY GLY H . n B 2 51 GLU 51 50 50 GLU GLU H . n B 2 52 ILE 52 51 51 ILE ILE H . n B 2 53 TYR 53 52 52 TYR TYR H . n B 2 54 HIS 54 53 53 HIS HIS H . n B 2 55 SER 55 54 54 SER SER H . n B 2 56 GLY 56 55 55 GLY GLY H . n B 2 57 SER 57 56 56 SER SER H . n B 2 58 THR 58 57 57 THR THR H . n B 2 59 ASN 59 58 58 ASN ASN H . n B 2 60 TYR 60 59 59 TYR TYR H . n B 2 61 ASN 61 60 60 ASN ASN H . n B 2 62 PRO 62 61 61 PRO PRO H . n B 2 63 SER 63 62 62 SER SER H . n B 2 64 LEU 64 63 63 LEU LEU H . n B 2 65 LYS 65 64 64 LYS LYS H . n B 2 66 SER 66 65 65 SER SER H . n B 2 67 ARG 67 66 66 ARG ARG H . n B 2 68 VAL 68 67 67 VAL VAL H . n B 2 69 THR 69 68 68 THR THR H . n B 2 70 ILE 70 69 69 ILE ILE H . n B 2 71 SER 71 70 70 SER SER H . n B 2 72 VAL 72 71 71 VAL VAL H . n B 2 73 ASP 73 72 72 ASP ASP H . n B 2 74 LYS 74 73 73 LYS LYS H . n B 2 75 SER 75 74 74 SER SER H . n B 2 76 LYS 76 75 75 LYS LYS H . n B 2 77 ASN 77 76 76 ASN ASN H . n B 2 78 GLN 78 77 77 GLN GLN H . n B 2 79 PHE 79 78 78 PHE PHE H . n B 2 80 SER 80 79 79 SER SER H . n B 2 81 LEU 81 80 80 LEU LEU H . n B 2 82 LYS 82 81 81 LYS LYS H . n B 2 83 LEU 83 82 82 LEU LEU H . n B 2 84 SER 84 82 82 SER SER H A n B 2 85 SER 85 82 82 SER SER H B n B 2 86 VAL 86 82 82 VAL VAL H C n B 2 87 THR 87 83 83 THR THR H . n B 2 88 ALA 88 84 84 ALA ALA H . n B 2 89 ALA 89 85 85 ALA ALA H . n B 2 90 ASP 90 86 86 ASP ASP H . n B 2 91 THR 91 87 87 THR THR H . n B 2 92 ALA 92 88 88 ALA ALA H . n B 2 93 VAL 93 89 89 VAL VAL H . n B 2 94 TYR 94 90 90 TYR TYR H . n B 2 95 TYR 95 91 91 TYR TYR H . n B 2 96 CYS 96 92 92 CYS CYS H . n B 2 97 ALA 97 93 93 ALA ALA H . n B 2 98 ARG 98 94 94 ARG ARG H . n B 2 99 GLY 99 95 95 GLY GLY H . n B 2 100 SER 100 96 96 SER SER H . n B 2 101 SER 101 97 97 SER SER H . n B 2 102 SER 102 98 98 SER SER H . n B 2 103 TRP 103 99 99 TRP TRP H . n B 2 104 TYR 104 100 100 TYR TYR H . n B 2 105 ASP 105 100 100 ASP ASP H A n B 2 106 LEU 106 100 100 LEU LEU H B n B 2 107 GLY 107 100 100 GLY GLY H C n B 2 108 PRO 108 100 100 PRO PRO H D n B 2 109 PHE 109 100 100 PHE PHE H E n B 2 110 ASP 110 101 101 ASP ASP H . n B 2 111 TYR 111 102 102 TYR TYR H . n B 2 112 TRP 112 103 103 TRP TRP H . n B 2 113 GLY 113 104 104 GLY GLY H . n B 2 114 GLN 114 105 105 GLN GLN H . n B 2 115 GLY 115 106 106 GLY GLY H . n B 2 116 THR 116 107 107 THR THR H . n B 2 117 CYS 117 108 108 CYS CYS H . n B 2 118 VAL 118 109 109 VAL VAL H . n B 2 119 THR 119 110 110 THR THR H . n B 2 120 VAL 120 111 111 VAL VAL H . n B 2 121 SER 121 112 112 SER SER H . n B 2 122 SER 122 113 113 SER SER H . n B 2 123 ALA 123 114 114 ALA ALA H . n B 2 124 SER 124 115 115 SER SER H . n B 2 125 THR 125 116 116 THR THR H . n B 2 126 LYS 126 117 117 LYS LYS H . n B 2 127 GLY 127 122 122 GLY GLY H . n B 2 128 PRO 128 123 123 PRO PRO H . n B 2 129 SER 129 124 124 SER SER H . n B 2 130 VAL 130 125 125 VAL VAL H . n B 2 131 PHE 131 126 126 PHE PHE H . n B 2 132 PRO 132 127 127 PRO PRO H . n B 2 133 LEU 133 128 128 LEU LEU H . n B 2 134 ALA 134 129 129 ALA ALA H . n B 2 135 PRO 135 130 130 PRO PRO H . n B 2 136 SER 136 131 131 SER SER H . n B 2 137 SER 137 132 ? ? ? H . n B 2 138 LYS 138 133 ? ? ? H . n B 2 139 SER 139 134 ? ? ? H . n B 2 140 THR 140 135 ? ? ? H . n B 2 141 SER 141 136 ? ? ? H . n B 2 142 GLY 142 137 137 GLY GLY H . n B 2 143 GLY 143 138 138 GLY GLY H . n B 2 144 THR 144 139 139 THR THR H . n B 2 145 ALA 145 140 140 ALA ALA H . n B 2 146 ALA 146 141 141 ALA ALA H . n B 2 147 LEU 147 142 142 LEU LEU H . n B 2 148 GLY 148 143 143 GLY GLY H . n B 2 149 CYS 149 144 144 CYS CYS H . n B 2 150 LEU 150 145 145 LEU LEU H . n B 2 151 VAL 151 146 146 VAL VAL H . n B 2 152 LYS 152 147 147 LYS LYS H . n B 2 153 ASP 153 148 148 ASP ASP H . n B 2 154 TYR 154 149 149 TYR TYR H . n B 2 155 PHE 155 150 150 PHE PHE H . n B 2 156 CYS 156 151 151 CYS CYS H . n B 2 157 GLU 157 152 152 GLU GLU H . n B 2 158 CYS 158 153 153 CYS CYS H . n B 2 159 PRO 159 154 154 PRO PRO H . n B 2 160 VAL 160 155 155 VAL VAL H . n B 2 161 THR 161 156 156 THR THR H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 SER 163 158 158 SER SER H . n B 2 164 TRP 164 159 159 TRP TRP H . n B 2 165 ASN 165 160 160 ASN ASN H . n B 2 166 SER 166 161 161 SER SER H . n B 2 167 GLY 167 162 162 GLY GLY H . n B 2 168 ALA 168 163 163 ALA ALA H . n B 2 169 LEU 169 164 164 LEU LEU H . n B 2 170 THR 170 165 165 THR THR H . n B 2 171 SER 171 166 166 SER SER H . n B 2 172 GLY 172 167 167 GLY GLY H . n B 2 173 VAL 173 168 168 VAL VAL H . n B 2 174 HIS 174 169 169 HIS HIS H . n B 2 175 THR 175 170 170 THR THR H . n B 2 176 PHE 176 171 171 PHE PHE H . n B 2 177 PRO 177 172 172 PRO PRO H . n B 2 178 ALA 178 173 173 ALA ALA H . n B 2 179 VAL 179 174 174 VAL VAL H . n B 2 180 LEU 180 175 175 LEU LEU H . n B 2 181 GLN 181 176 176 GLN GLN H . n B 2 182 SER 182 177 177 SER SER H . n B 2 183 SER 183 178 178 SER SER H . n B 2 184 GLY 184 179 179 GLY GLY H . n B 2 185 LEU 185 180 180 LEU LEU H . n B 2 186 TYR 186 181 181 TYR TYR H . n B 2 187 SER 187 182 182 SER SER H . n B 2 188 LEU 188 183 183 LEU LEU H . n B 2 189 SER 189 184 184 SER SER H . n B 2 190 SER 190 185 185 SER SER H . n B 2 191 VAL 191 186 186 VAL VAL H . n B 2 192 VAL 192 187 187 VAL VAL H . n B 2 193 THR 193 188 188 THR THR H . n B 2 194 VAL 194 189 189 VAL VAL H . n B 2 195 PRO 195 190 190 PRO PRO H . n B 2 196 SER 196 191 191 SER SER H . n B 2 197 SER 197 192 192 SER SER H . n B 2 198 SER 198 193 193 SER SER H . n B 2 199 LEU 199 194 194 LEU LEU H . n B 2 200 GLY 200 195 195 GLY GLY H . n B 2 201 THR 201 196 196 THR THR H . n B 2 202 GLN 202 197 197 GLN GLN H . n B 2 203 THR 203 198 198 THR THR H . n B 2 204 TYR 204 199 199 TYR TYR H . n B 2 205 ILE 205 200 200 ILE ILE H . n B 2 206 CYS 206 201 201 CYS CYS H . n B 2 207 ASN 207 202 202 ASN ASN H . n B 2 208 VAL 208 203 203 VAL VAL H . n B 2 209 ASN 209 204 204 ASN ASN H . n B 2 210 HIS 210 205 205 HIS HIS H . n B 2 211 LYS 211 206 206 LYS LYS H . n B 2 212 PRO 212 207 207 PRO PRO H . n B 2 213 SER 213 208 208 SER SER H . n B 2 214 ASN 214 209 209 ASN ASN H . n B 2 215 THR 215 210 210 THR THR H . n B 2 216 LYS 216 211 211 LYS LYS H . n B 2 217 VAL 217 212 212 VAL VAL H . n B 2 218 ASP 218 213 213 ASP ASP H . n B 2 219 LYS 219 214 214 LYS LYS H . n B 2 220 LYS 220 215 215 LYS LYS H . n B 2 221 VAL 221 216 216 VAL VAL H . n B 2 222 GLU 222 217 217 GLU GLU H . n B 2 223 PRO 223 218 218 PRO PRO H . n B 2 224 LYS 224 219 219 LYS LYS H . n B 2 225 SER 225 220 ? ? ? H . n B 2 226 CYS 226 221 ? ? ? H . n B 2 227 ASP 227 222 ? ? ? H . n B 2 228 LYS 228 223 ? ? ? H . n B 2 229 THR 229 224 ? ? ? H . n B 2 230 HIS 230 225 ? ? ? H . n B 2 231 THR 231 226 ? ? ? H . n B 2 232 HIS 232 227 ? ? ? H . n B 2 233 HIS 233 228 ? ? ? H . n B 2 234 HIS 234 229 ? ? ? H . n B 2 235 HIS 235 230 ? ? ? H . n B 2 236 HIS 236 231 ? ? ? H . n B 2 237 HIS 237 232 ? ? ? H . n B 2 238 PRO 238 233 ? ? ? H . n C 3 1 SER 1 2 2 SER SER L . n C 3 2 VAL 2 3 3 VAL VAL L . n C 3 3 LEU 3 4 4 LEU LEU L . n C 3 4 THR 4 5 5 THR THR L . n C 3 5 GLN 5 6 6 GLN GLN L . n C 3 6 PRO 6 7 7 PRO PRO L . n C 3 7 PRO 7 8 8 PRO PRO L . n C 3 8 SER 8 9 9 SER SER L . n C 3 9 ALA 9 11 11 ALA ALA L . n C 3 10 SER 10 12 12 SER SER L . n C 3 11 GLY 11 13 13 GLY GLY L . n C 3 12 THR 12 14 14 THR THR L . n C 3 13 PRO 13 15 15 PRO PRO L . n C 3 14 GLY 14 16 16 GLY GLY L . n C 3 15 GLN 15 17 17 GLN GLN L . n C 3 16 ARG 16 18 18 ARG ARG L . n C 3 17 VAL 17 19 19 VAL VAL L . n C 3 18 THR 18 20 20 THR THR L . n C 3 19 ILE 19 21 21 ILE ILE L . n C 3 20 SER 20 22 22 SER SER L . n C 3 21 CYS 21 23 23 CYS CYS L . n C 3 22 SER 22 24 24 SER SER L . n C 3 23 GLY 23 25 25 GLY GLY L . n C 3 24 SER 24 26 26 SER SER L . n C 3 25 SER 25 27 27 SER SER L . n C 3 26 SER 26 27 27 SER SER L A n C 3 27 ASN 27 27 27 ASN ASN L B n C 3 28 ILE 28 28 28 ILE ILE L . n C 3 29 GLY 29 29 29 GLY GLY L . n C 3 30 SER 30 30 30 SER SER L . n C 3 31 ASN 31 31 31 ASN ASN L . n C 3 32 TYR 32 32 32 TYR TYR L . n C 3 33 VAL 33 33 33 VAL VAL L . n C 3 34 TYR 34 34 34 TYR TYR L . n C 3 35 TRP 35 35 35 TRP TRP L . n C 3 36 TYR 36 36 36 TYR TYR L . n C 3 37 GLN 37 37 37 GLN GLN L . n C 3 38 GLN 38 38 38 GLN GLN L . n C 3 39 LEU 39 39 39 LEU LEU L . n C 3 40 CYS 40 40 40 CYS CYS L . n C 3 41 GLY 41 41 41 GLY GLY L . n C 3 42 THR 42 42 42 THR THR L . n C 3 43 ALA 43 43 43 ALA ALA L . n C 3 44 PRO 44 44 44 PRO PRO L . n C 3 45 LYS 45 45 45 LYS LYS L . n C 3 46 LEU 46 46 46 LEU LEU L . n C 3 47 LEU 47 47 47 LEU LEU L . n C 3 48 ILE 48 48 48 ILE ILE L . n C 3 49 TYR 49 49 49 TYR TYR L . n C 3 50 ARG 50 50 50 ARG ARG L . n C 3 51 ASN 51 51 51 ASN ASN L . n C 3 52 ASN 52 52 52 ASN ASN L . n C 3 53 GLN 53 53 53 GLN GLN L . n C 3 54 ARG 54 54 54 ARG ARG L . n C 3 55 PRO 55 55 55 PRO PRO L . n C 3 56 SER 56 56 56 SER SER L . n C 3 57 GLY 57 57 57 GLY GLY L . n C 3 58 VAL 58 58 58 VAL VAL L . n C 3 59 PRO 59 59 59 PRO PRO L . n C 3 60 ASP 60 60 60 ASP ASP L . n C 3 61 ARG 61 61 61 ARG ARG L . n C 3 62 PHE 62 62 62 PHE PHE L . n C 3 63 SER 63 63 63 SER SER L . n C 3 64 GLY 64 64 64 GLY GLY L . n C 3 65 SER 65 65 65 SER SER L . n C 3 66 LYS 66 66 66 LYS LYS L . n C 3 67 SER 67 67 67 SER SER L . n C 3 68 GLY 68 68 68 GLY GLY L . n C 3 69 THR 69 69 69 THR THR L . n C 3 70 SER 70 70 70 SER SER L . n C 3 71 ALA 71 71 71 ALA ALA L . n C 3 72 SER 72 72 72 SER SER L . n C 3 73 LEU 73 73 73 LEU LEU L . n C 3 74 ALA 74 74 74 ALA ALA L . n C 3 75 ILE 75 75 75 ILE ILE L . n C 3 76 SER 76 76 76 SER SER L . n C 3 77 GLY 77 77 77 GLY GLY L . n C 3 78 LEU 78 78 78 LEU LEU L . n C 3 79 ARG 79 79 79 ARG ARG L . n C 3 80 CYS 80 80 80 CYS CYS L . n C 3 81 GLU 81 81 81 GLU GLU L . n C 3 82 ASP 82 82 82 ASP ASP L . n C 3 83 GLU 83 83 83 GLU GLU L . n C 3 84 ALA 84 84 84 ALA ALA L . n C 3 85 ASP 85 85 85 ASP ASP L . n C 3 86 TYR 86 86 86 TYR TYR L . n C 3 87 TYR 87 87 87 TYR TYR L . n C 3 88 CYS 88 88 88 CYS CYS L . n C 3 89 ALA 89 89 89 ALA ALA L . n C 3 90 ALA 90 90 90 ALA ALA L . n C 3 91 TRP 91 91 91 TRP TRP L . n C 3 92 ASP 92 92 92 ASP ASP L . n C 3 93 GLU 93 93 93 GLU GLU L . n C 3 94 ARG 94 94 94 ARG ARG L . n C 3 95 LEU 95 95 95 LEU LEU L . n C 3 96 SER 96 95 95 SER SER L A n C 3 97 GLY 97 95 95 GLY GLY L B n C 3 98 TRP 98 96 96 TRP TRP L . n C 3 99 VAL 99 97 97 VAL VAL L . n C 3 100 PHE 100 98 98 PHE PHE L . n C 3 101 GLY 101 99 99 GLY GLY L . n C 3 102 GLY 102 100 100 GLY GLY L . n C 3 103 GLY 103 101 101 GLY GLY L . n C 3 104 THR 104 102 102 THR THR L . n C 3 105 LYS 105 103 103 LYS LYS L . n C 3 106 LEU 106 104 104 LEU LEU L . n C 3 107 THR 107 105 105 THR THR L . n C 3 108 VAL 108 106 106 VAL VAL L . n C 3 109 LEU 109 106 106 LEU LEU L A n C 3 110 GLY 110 107 107 GLY GLY L . n C 3 111 GLN 111 108 108 GLN GLN L . n C 3 112 PRO 112 109 109 PRO PRO L . n C 3 113 LYS 113 110 110 LYS LYS L . n C 3 114 ALA 114 111 111 ALA ALA L . n C 3 115 ALA 115 112 112 ALA ALA L . n C 3 116 PRO 116 113 113 PRO PRO L . n C 3 117 SER 117 114 114 SER SER L . n C 3 118 VAL 118 115 115 VAL VAL L . n C 3 119 THR 119 116 116 THR THR L . n C 3 120 LEU 120 117 117 LEU LEU L . n C 3 121 PHE 121 118 118 PHE PHE L . n C 3 122 PRO 122 119 119 PRO PRO L . n C 3 123 PRO 123 120 120 PRO PRO L . n C 3 124 SER 124 121 121 SER SER L . n C 3 125 SER 125 122 122 SER SER L . n C 3 126 GLU 126 123 123 GLU GLU L . n C 3 127 GLU 127 124 124 GLU GLU L . n C 3 128 LEU 128 125 125 LEU LEU L . n C 3 129 GLN 129 126 126 GLN GLN L . n C 3 130 ALA 130 127 127 ALA ALA L . n C 3 131 ASN 131 128 128 ASN ASN L . n C 3 132 LYS 132 129 129 LYS LYS L . n C 3 133 ALA 133 130 130 ALA ALA L . n C 3 134 THR 134 131 131 THR THR L . n C 3 135 LEU 135 132 132 LEU LEU L . n C 3 136 VAL 136 133 133 VAL VAL L . n C 3 137 CYS 137 134 134 CYS CYS L . n C 3 138 LEU 138 135 135 LEU LEU L . n C 3 139 ILE 139 136 136 ILE ILE L . n C 3 140 SER 140 137 137 SER SER L . n C 3 141 ASP 141 138 138 ASP ASP L . n C 3 142 PHE 142 139 139 PHE PHE L . n C 3 143 TYR 143 140 140 TYR TYR L . n C 3 144 PRO 144 141 141 PRO PRO L . n C 3 145 GLY 145 142 142 GLY GLY L . n C 3 146 ALA 146 143 143 ALA ALA L . n C 3 147 VAL 147 144 144 VAL VAL L . n C 3 148 THR 148 145 145 THR THR L . n C 3 149 VAL 149 146 146 VAL VAL L . n C 3 150 ALA 150 147 147 ALA ALA L . n C 3 151 TRP 151 148 148 TRP TRP L . n C 3 152 LYS 152 149 149 LYS LYS L . n C 3 153 ALA 153 150 150 ALA ALA L . n C 3 154 ASP 154 151 151 ASP ASP L . n C 3 155 SER 155 152 152 SER SER L . n C 3 156 SER 156 153 153 SER SER L . n C 3 157 PRO 157 154 154 PRO PRO L . n C 3 158 VAL 158 155 155 VAL VAL L . n C 3 159 LYS 159 156 156 LYS LYS L . n C 3 160 ALA 160 157 157 ALA ALA L . n C 3 161 GLY 161 158 158 GLY GLY L . n C 3 162 VAL 162 159 159 VAL VAL L . n C 3 163 GLU 163 160 160 GLU GLU L . n C 3 164 THR 164 161 161 THR THR L . n C 3 165 THR 165 162 162 THR THR L . n C 3 166 THR 166 163 163 THR THR L . n C 3 167 PRO 167 164 164 PRO PRO L . n C 3 168 SER 168 165 165 SER SER L . n C 3 169 CYS 169 166 166 CYS CYS L . n C 3 170 GLN 170 167 167 GLN GLN L . n C 3 171 SER 171 168 168 SER SER L . n C 3 172 ASN 172 170 170 ASN ASN L . n C 3 173 CYS 173 171 171 CYS CYS L . n C 3 174 ASN 174 172 172 ASN ASN L . n C 3 175 LYS 175 173 173 LYS LYS L . n C 3 176 TYR 176 174 174 TYR TYR L . n C 3 177 ALA 177 175 175 ALA ALA L . n C 3 178 ALA 178 176 176 ALA ALA L . n C 3 179 SER 179 177 177 SER SER L . n C 3 180 SER 180 178 178 SER SER L . n C 3 181 TYR 181 179 179 TYR TYR L . n C 3 182 LEU 182 180 180 LEU LEU L . n C 3 183 SER 183 181 181 SER SER L . n C 3 184 LEU 184 182 182 LEU LEU L . n C 3 185 THR 185 183 183 THR THR L . n C 3 186 PRO 186 184 184 PRO PRO L . n C 3 187 GLU 187 185 185 GLU GLU L . n C 3 188 GLN 188 186 186 GLN GLN L . n C 3 189 TRP 189 187 187 TRP TRP L . n C 3 190 LYS 190 188 188 LYS LYS L . n C 3 191 SER 191 189 189 SER SER L . n C 3 192 HIS 192 190 190 HIS HIS L . n C 3 193 ARG 193 191 191 ARG ARG L . n C 3 194 SER 194 192 192 SER SER L . n C 3 195 TYR 195 193 193 TYR TYR L . n C 3 196 SER 196 194 194 SER SER L . n C 3 197 CYS 197 195 195 CYS CYS L . n C 3 198 GLN 198 196 196 GLN GLN L . n C 3 199 VAL 199 197 197 VAL VAL L . n C 3 200 THR 200 198 198 THR THR L . n C 3 201 HIS 201 199 199 HIS HIS L . n C 3 202 GLU 202 200 200 GLU GLU L . n C 3 203 GLY 203 201 201 GLY GLY L . n C 3 204 SER 204 202 202 SER SER L . n C 3 205 THR 205 203 203 THR THR L . n C 3 206 VAL 206 204 204 VAL VAL L . n C 3 207 GLU 207 205 205 GLU GLU L . n C 3 208 LYS 208 206 206 LYS LYS L . n C 3 209 THR 209 207 207 THR THR L . n C 3 210 VAL 210 208 208 VAL VAL L . n C 3 211 ALA 211 209 209 ALA ALA L . n C 3 212 PRO 212 210 210 PRO PRO L . n C 3 213 THR 213 211 211 THR THR L . n C 3 214 GLU 214 212 212 GLU GLU L . n C 3 215 CYS 215 213 ? ? ? L . n C 3 216 SER 216 214 ? ? ? L . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 A1AAW ? ? A1AAW ? ? 'SUBJECT OF INVESTIGATION' ? 2 GDP ? ? GDP ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 A1AAW 1 201 203 A1AAW MKZ A . E 5 GDP 1 202 204 GDP GDP A . F 6 MG 1 203 203 MG MG A . G 7 HOH 1 301 9 HOH HOH A . G 7 HOH 2 302 5 HOH HOH A . G 7 HOH 3 303 18 HOH HOH A . G 7 HOH 4 304 31 HOH HOH A . G 7 HOH 5 305 33 HOH HOH A . G 7 HOH 6 306 21 HOH HOH A . G 7 HOH 7 307 20 HOH HOH A . G 7 HOH 8 308 32 HOH HOH A . H 7 HOH 1 301 16 HOH HOH H . H 7 HOH 2 302 8 HOH HOH H . H 7 HOH 3 303 2 HOH HOH H . H 7 HOH 4 304 40 HOH HOH H . H 7 HOH 5 305 3 HOH HOH H . H 7 HOH 6 306 7 HOH HOH H . H 7 HOH 7 307 35 HOH HOH H . H 7 HOH 8 308 19 HOH HOH H . H 7 HOH 9 309 37 HOH HOH H . H 7 HOH 10 310 6 HOH HOH H . H 7 HOH 11 311 4 HOH HOH H . H 7 HOH 12 312 13 HOH HOH H . H 7 HOH 13 313 17 HOH HOH H . H 7 HOH 14 314 38 HOH HOH H . H 7 HOH 15 315 34 HOH HOH H . H 7 HOH 16 316 39 HOH HOH H . H 7 HOH 17 317 1 HOH HOH H . H 7 HOH 18 318 15 HOH HOH H . I 7 HOH 1 301 14 HOH HOH L . I 7 HOH 2 302 27 HOH HOH L . I 7 HOH 3 303 12 HOH HOH L . I 7 HOH 4 304 26 HOH HOH L . I 7 HOH 5 305 23 HOH HOH L . I 7 HOH 6 306 10 HOH HOH L . I 7 HOH 7 307 25 HOH HOH L . I 7 HOH 8 308 11 HOH HOH L . I 7 HOH 9 309 36 HOH HOH L . I 7 HOH 10 310 22 HOH HOH L . I 7 HOH 11 311 29 HOH HOH L . I 7 HOH 12 312 28 HOH HOH L . I 7 HOH 13 313 30 HOH HOH L . I 7 HOH 14 314 24 HOH HOH L . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8VGQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VGQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8VGQ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.013 ? 4746 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.041 ? 6471 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 14.435 ? 1719 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.064 ? 721 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.011 ? 821 ? f_plane_restr ? ? # _struct.entry_id 8VGQ _struct.title 'CryoEM structure of GNE-1952-alkylated KRAS G12C in complex with engineered conformationally rigid Fab 2H11.4DS' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VGQ _struct_keywords.text 'fab, antigen binding fragment, protein engineering, gtpase, ONCOPROTEIN-MMUNE SYSTEM complex, ONCOPROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'ONCOPROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RASK_HUMAN P01116 P01116-2 1 ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV REIRKHKEK ; 1 2 PDB 8VGQ 8VGQ ? 2 ? 1 3 PDB 8VGQ 8VGQ ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8VGQ A 2 ? 170 ? P01116 1 ? 169 ? 1 169 2 2 8VGQ H 1 ? 238 ? 8VGQ 1 ? 233 ? 1 233 3 3 8VGQ L 1 ? 216 ? 8VGQ 2 ? 214 ? 2 214 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8VGQ GLY A 1 ? UNP P01116 ? ? 'expression tag' 0 1 1 8VGQ CYS A 13 ? UNP P01116 GLY 12 'engineered mutation' 12 2 1 8VGQ SER A 52 ? UNP P01116 CYS 51 'engineered mutation' 51 3 1 8VGQ LEU A 81 ? UNP P01116 CYS 80 'engineered mutation' 80 4 1 8VGQ SER A 119 ? UNP P01116 CYS 118 'engineered mutation' 118 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 16 ? ASN A 27 ? GLY A 15 ASN A 26 1 ? 12 HELX_P HELX_P2 AA2 MET A 68 ? THR A 75 ? MET A 67 THR A 74 1 ? 8 HELX_P HELX_P3 AA3 ASN A 87 ? ASP A 93 ? ASN A 86 ASP A 92 1 ? 7 HELX_P HELX_P4 AA4 ASP A 93 ? VAL A 104 ? ASP A 92 VAL A 103 1 ? 12 HELX_P HELX_P5 AA5 ASP A 127 ? GLY A 139 ? ASP A 126 GLY A 138 1 ? 13 HELX_P HELX_P6 AA6 GLY A 152 ? LYS A 168 ? GLY A 151 LYS A 167 1 ? 17 HELX_P HELX_P7 AA7 THR B 87 ? THR B 91 ? THR H 83 THR H 87 5 ? 5 HELX_P HELX_P8 AA8 SER B 166 ? ALA B 168 ? SER H 161 ALA H 163 5 ? 3 HELX_P HELX_P9 AA9 SER B 197 ? THR B 201 ? SER H 192 THR H 196 5 ? 5 HELX_P HELX_P10 AB1 ARG C 79 ? GLU C 83 ? ARG L 79 GLU L 83 5 ? 5 HELX_P HELX_P11 AB2 SER C 124 ? ALA C 130 ? SER L 121 ALA L 127 1 ? 7 HELX_P HELX_P12 AB3 THR C 185 ? SER C 191 ? THR L 183 SER L 189 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 156 SG ? ? H CYS 11 H CYS 151 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 92 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf3 disulf ? ? B CYS 117 SG ? ? ? 1_555 B CYS 158 SG ? ? H CYS 108 H CYS 153 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf4 disulf ? ? B CYS 149 SG ? ? ? 1_555 B CYS 206 SG ? ? H CYS 144 H CYS 201 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf6 disulf ? ? C CYS 40 SG ? ? ? 1_555 C CYS 169 SG ? ? L CYS 40 L CYS 166 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf7 disulf ? ? C CYS 80 SG ? ? ? 1_555 C CYS 173 SG ? ? L CYS 80 L CYS 171 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf8 disulf ? ? C CYS 137 SG ? ? ? 1_555 C CYS 197 SG ? ? L CYS 134 L CYS 195 1_555 ? ? ? ? ? ? ? 2.035 ? ? covale1 covale none ? A CYS 13 SG ? ? ? 1_555 D A1AAW . C ? ? A CYS 12 A A1AAW 201 1_555 ? ? ? ? ? ? ? 1.764 ? ? metalc1 metalc ? ? A SER 18 OG ? ? ? 1_555 F MG . MG ? ? A SER 17 A MG 203 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc2 metalc ? ? E GDP . O1B ? ? ? 1_555 F MG . MG ? ? A GDP 202 A MG 203 1_555 ? ? ? ? ? ? ? 1.915 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OG _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id SER _pdbx_struct_conn_angle.ptnr1_label_seq_id 18 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id SER _pdbx_struct_conn_angle.ptnr1_auth_seq_id 17 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id F _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 203 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O1B _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id E _pdbx_struct_conn_angle.ptnr3_label_comp_id GDP _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GDP _pdbx_struct_conn_angle.ptnr3_auth_seq_id 202 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 78.2 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 A1AAW D . ? CYS A 13 ? A1AAW A 201 ? 1_555 CYS A 12 ? 1_555 C SG CYS 1 A1AAW None 'Covalent chemical modification' 2 CYS B 11 ? CYS B 156 ? CYS H 11 ? 1_555 CYS H 151 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 22 ? CYS B 96 ? CYS H 22 ? 1_555 CYS H 92 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 117 ? CYS B 158 ? CYS H 108 ? 1_555 CYS H 153 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 149 ? CYS B 206 ? CYS H 144 ? 1_555 CYS H 201 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS C 21 ? CYS C 88 ? CYS L 23 ? 1_555 CYS L 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS C 40 ? CYS C 169 ? CYS L 40 ? 1_555 CYS L 166 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS C 80 ? CYS C 173 ? CYS L 80 ? 1_555 CYS L 171 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS C 137 ? CYS C 197 ? CYS L 134 ? 1_555 CYS L 195 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 14 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 14 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 15 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 15 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 4 ? AA3 ? 6 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 3 ? AA8 ? 5 ? AA9 ? 4 ? AB1 ? 3 ? AB2 ? 4 ? AB3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB2 1 2 ? anti-parallel AB2 2 3 ? anti-parallel AB2 3 4 ? anti-parallel AB3 1 2 ? anti-parallel AB3 2 3 ? anti-parallel AB3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 39 ? ILE A 47 ? ASP A 38 ILE A 46 AA1 2 GLU A 50 ? ASP A 58 ? GLU A 49 ASP A 57 AA1 3 THR A 3 ? GLY A 11 ? THR A 2 GLY A 10 AA1 4 GLY A 78 ? ALA A 84 ? GLY A 77 ALA A 83 AA1 5 MET A 112 ? ASN A 117 ? MET A 111 ASN A 116 AA1 6 PHE A 142 ? GLU A 144 ? PHE A 141 GLU A 143 AA2 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7 AA2 2 LEU B 18 ? SER B 25 ? LEU H 18 SER H 25 AA2 3 GLN B 78 ? LEU B 83 ? GLN H 77 LEU H 82 AA2 4 VAL B 68 ? ASP B 73 ? VAL H 67 ASP H 72 AA3 1 CYS B 11 ? VAL B 12 ? CYS H 11 VAL H 12 AA3 2 THR B 116 ? VAL B 120 ? THR H 107 VAL H 111 AA3 3 ALA B 92 ? GLY B 99 ? ALA H 88 GLY H 95 AA3 4 TRP B 34 ? GLN B 40 ? TRP H 34 GLN H 39 AA3 5 GLU B 47 ? ILE B 52 ? GLU H 46 ILE H 51 AA3 6 THR B 58 ? TYR B 60 ? THR H 57 TYR H 59 AA4 1 CYS B 11 ? VAL B 12 ? CYS H 11 VAL H 12 AA4 2 THR B 116 ? VAL B 120 ? THR H 107 VAL H 111 AA4 3 ALA B 92 ? GLY B 99 ? ALA H 88 GLY H 95 AA4 4 TYR B 111 ? TRP B 112 ? TYR H 102 TRP H 103 AA5 1 SER B 129 ? LEU B 133 ? SER H 124 LEU H 128 AA5 2 THR B 144 ? TYR B 154 ? THR H 139 TYR H 149 AA5 3 TYR B 186 ? PRO B 195 ? TYR H 181 PRO H 190 AA5 4 VAL B 173 ? THR B 175 ? VAL H 168 THR H 170 AA6 1 SER B 129 ? LEU B 133 ? SER H 124 LEU H 128 AA6 2 THR B 144 ? TYR B 154 ? THR H 139 TYR H 149 AA6 3 TYR B 186 ? PRO B 195 ? TYR H 181 PRO H 190 AA6 4 VAL B 179 ? LEU B 180 ? VAL H 174 LEU H 175 AA7 1 VAL B 160 ? TRP B 164 ? VAL H 155 TRP H 159 AA7 2 TYR B 204 ? HIS B 210 ? TYR H 199 HIS H 205 AA7 3 THR B 215 ? VAL B 221 ? THR H 210 VAL H 216 AA8 1 SER C 8 ? GLY C 11 ? SER L 9 GLY L 13 AA8 2 THR C 104 ? VAL C 108 ? THR L 102 VAL L 106 AA8 3 ASP C 85 ? ASP C 92 ? ASP L 85 ASP L 92 AA8 4 TYR C 34 ? GLN C 38 ? TYR L 34 GLN L 38 AA8 5 LYS C 45 ? ILE C 48 ? LYS L 45 ILE L 48 AA9 1 SER C 8 ? GLY C 11 ? SER L 9 GLY L 13 AA9 2 THR C 104 ? VAL C 108 ? THR L 102 VAL L 106 AA9 3 ASP C 85 ? ASP C 92 ? ASP L 85 ASP L 92 AA9 4 GLY C 97 B PHE C 100 ? GLY L 95 PHE L 98 AB1 1 VAL C 17 ? SER C 22 ? VAL L 19 SER L 24 AB1 2 SER C 70 ? ILE C 75 ? SER L 70 ILE L 75 AB1 3 PHE C 62 ? SER C 67 ? PHE L 62 SER L 67 AB2 1 SER C 117 ? PHE C 121 ? SER L 114 PHE L 118 AB2 2 ALA C 133 ? PHE C 142 ? ALA L 130 PHE L 139 AB2 3 TYR C 176 ? LEU C 184 ? TYR L 174 LEU L 182 AB2 4 VAL C 162 ? THR C 164 ? VAL L 159 THR L 161 AB3 1 SER C 156 ? PRO C 157 ? SER L 153 PRO L 154 AB3 2 THR C 148 ? ALA C 153 ? THR L 145 ALA L 150 AB3 3 TYR C 195 ? HIS C 201 ? TYR L 193 HIS L 199 AB3 4 SER C 204 ? VAL C 210 ? SER L 202 VAL L 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 43 ? N LYS A 42 O LEU A 54 ? O LEU A 53 AA1 2 3 O ASP A 55 ? O ASP A 54 N LEU A 7 ? N LEU A 6 AA1 3 4 N VAL A 10 ? N VAL A 9 O LEU A 80 ? O LEU A 79 AA1 4 5 N LEU A 81 ? N LEU A 80 O VAL A 115 ? O VAL A 114 AA1 5 6 N GLY A 116 ? N GLY A 115 O ILE A 143 ? O ILE A 142 AA2 1 2 N SER B 7 ? N SER H 7 O THR B 21 ? O THR H 21 AA2 2 3 N CYS B 22 ? N CYS H 22 O PHE B 79 ? O PHE H 78 AA2 3 4 O GLN B 78 ? O GLN H 77 N ASP B 73 ? N ASP H 72 AA3 1 2 N VAL B 12 ? N VAL H 12 O THR B 119 ? O THR H 110 AA3 2 3 O THR B 116 ? O THR H 107 N TYR B 94 ? N TYR H 90 AA3 3 4 O TYR B 95 ? O TYR H 91 N VAL B 38 ? N VAL H 37 AA3 4 5 N ARG B 39 ? N ARG H 38 O GLU B 47 ? O GLU H 46 AA3 5 6 N GLU B 51 ? N GLU H 50 O ASN B 59 ? O ASN H 58 AA4 1 2 N VAL B 12 ? N VAL H 12 O THR B 119 ? O THR H 110 AA4 2 3 O THR B 116 ? O THR H 107 N TYR B 94 ? N TYR H 90 AA4 3 4 N ARG B 98 ? N ARG H 94 O TYR B 111 ? O TYR H 102 AA5 1 2 N PHE B 131 ? N PHE H 126 O LEU B 150 ? O LEU H 145 AA5 2 3 N VAL B 151 ? N VAL H 146 O LEU B 188 ? O LEU H 183 AA5 3 4 O VAL B 191 ? O VAL H 186 N HIS B 174 ? N HIS H 169 AA6 1 2 N PHE B 131 ? N PHE H 126 O LEU B 150 ? O LEU H 145 AA6 2 3 N VAL B 151 ? N VAL H 146 O LEU B 188 ? O LEU H 183 AA6 3 4 O SER B 187 ? O SER H 182 N VAL B 179 ? N VAL H 174 AA7 1 2 N SER B 163 ? N SER H 158 O ASN B 207 ? O ASN H 202 AA7 2 3 N TYR B 204 ? N TYR H 199 O VAL B 221 ? O VAL H 216 AA8 1 2 N ALA C 9 ? N ALA L 11 O THR C 107 ? O THR L 105 AA8 2 3 O THR C 104 ? O THR L 102 N TYR C 86 ? N TYR L 86 AA8 3 4 O ASP C 85 ? O ASP L 85 N GLN C 38 ? N GLN L 38 AA8 4 5 N TRP C 35 ? N TRP L 35 O ILE C 48 ? O ILE L 48 AA9 1 2 N ALA C 9 ? N ALA L 11 O THR C 107 ? O THR L 105 AA9 2 3 O THR C 104 ? O THR L 102 N TYR C 86 ? N TYR L 86 AA9 3 4 N ALA C 90 ? N ALA L 90 O VAL C 99 ? O VAL L 97 AB1 1 2 N ILE C 19 ? N ILE L 21 O LEU C 73 ? O LEU L 73 AB1 2 3 O SER C 70 ? O SER L 70 N SER C 67 ? N SER L 67 AB2 1 2 N THR C 119 ? N THR L 116 O LEU C 138 ? O LEU L 135 AB2 2 3 N ALA C 133 ? N ALA L 130 O LEU C 184 ? O LEU L 182 AB2 3 4 O TYR C 181 ? O TYR L 179 N GLU C 163 ? N GLU L 160 AB3 1 2 O SER C 156 ? O SER L 153 N ALA C 153 ? N ALA L 150 AB3 2 3 N ALA C 150 ? N ALA L 147 O GLN C 198 ? O GLN L 196 AB3 3 4 N HIS C 201 ? N HIS L 199 O SER C 204 ? O SER L 202 # _pdbx_entry_details.entry_id 8VGQ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 H _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 92 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 H _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 92 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 H _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 92 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.41 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.21 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 59 ? ? -159.87 -151.90 2 1 ARG A 149 ? ? 70.52 34.79 3 1 PRO H 15 ? ? -94.15 39.86 4 1 CYS H 151 ? ? 87.19 95.35 5 1 SER H 161 ? ? 57.33 19.35 6 1 THR H 196 ? ? -153.35 56.39 7 1 ASN L 27 B ? -125.61 -89.06 8 1 LEU L 47 ? ? -130.54 -50.51 9 1 ASN L 51 ? ? 70.05 -64.36 10 1 ASN L 128 ? ? 66.72 62.56 11 1 ASP L 151 ? ? 41.08 -102.60 12 1 CYS L 171 ? ? 49.34 23.29 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id L _pdbx_validate_planes.auth_seq_id 61 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.113 _pdbx_validate_planes.type 'SIDE CHAIN' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8VGQ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7RP3 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7RP3 _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 8VGQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 926738 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 'MULTIPLE SOURCES' COMPLEX 'GNE-1952-alkylated KRAS G12C in complex with Fab 2H11.4DS' ? ? ? 1,2,3 2 1 RECOMBINANT COMPLEX 'GNE-1952-alkylated KRAS G12C' ? ? ? 1 3 1 RECOMBINANT COMPLEX 'Fab 2H11.4DS' ? ? ? 2,3 # _em_imaging.entry_id 8VGQ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R0.6/1' _em_sample_support.details ;The peak fraction was subjected to mild crosslinking with 0.5 mM BS3 at room temperature for 10 min. The crosslinking reaction was quenched by addition of 100mM Tris pH 7.5. ; _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8VGQ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8VGQ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8VGQ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLU 168 ? A GLU 169 3 1 Y 1 A LYS 169 ? A LYS 170 4 1 Y 1 H SER 132 ? B SER 137 5 1 Y 1 H LYS 133 ? B LYS 138 6 1 Y 1 H SER 134 ? B SER 139 7 1 Y 1 H THR 135 ? B THR 140 8 1 Y 1 H SER 136 ? B SER 141 9 1 Y 1 H SER 220 ? B SER 225 10 1 Y 1 H CYS 221 ? B CYS 226 11 1 Y 1 H ASP 222 ? B ASP 227 12 1 Y 1 H LYS 223 ? B LYS 228 13 1 Y 1 H THR 224 ? B THR 229 14 1 Y 1 H HIS 225 ? B HIS 230 15 1 Y 1 H THR 226 ? B THR 231 16 1 Y 1 H HIS 227 ? B HIS 232 17 1 Y 1 H HIS 228 ? B HIS 233 18 1 Y 1 H HIS 229 ? B HIS 234 19 1 Y 1 H HIS 230 ? B HIS 235 20 1 Y 1 H HIS 231 ? B HIS 236 21 1 Y 1 H HIS 232 ? B HIS 237 22 1 Y 1 H PRO 233 ? B PRO 238 23 1 Y 1 L CYS 213 ? C CYS 215 24 1 Y 1 L SER 214 ? C SER 216 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1AAW C1 C N N 1 A1AAW C2 C N N 2 A1AAW C3 C N N 3 A1AAW C7 C Y N 4 A1AAW C8 C Y N 5 A1AAW C9 C Y N 6 A1AAW C10 C Y N 7 A1AAW C11 C Y N 8 A1AAW C12 C N N 9 A1AAW C13 C Y N 10 A1AAW C14 C Y N 11 A1AAW C15 C Y N 12 A1AAW C16 C Y N 13 A1AAW C19 C Y N 14 A1AAW C20 C Y N 15 A1AAW C21 C N N 16 A1AAW C22 C N N 17 A1AAW CL C N N 18 A1AAW C18 C Y N 19 A1AAW C17 C Y N 20 A1AAW N5 N Y N 21 A1AAW N4 N Y N 22 A1AAW N3 N Y N 23 A1AAW C6 C Y N 24 A1AAW N2 N Y N 25 A1AAW C5 C Y N 26 A1AAW N1 N N N 27 A1AAW C4 C N N 28 A1AAW N N N N 29 A1AAW O O N N 30 A1AAW C C N N 31 A1AAW H1 H N N 32 A1AAW H2 H N N 33 A1AAW H3 H N N 34 A1AAW H4 H N N 35 A1AAW H5 H N N 36 A1AAW H6 H N N 37 A1AAW H7 H N N 38 A1AAW H8 H N N 39 A1AAW H9 H N N 40 A1AAW H10 H N N 41 A1AAW H11 H N N 42 A1AAW H12 H N N 43 A1AAW H13 H N N 44 A1AAW H14 H N N 45 A1AAW H15 H N N 46 A1AAW H16 H N N 47 A1AAW H17 H N N 48 A1AAW H18 H N N 49 A1AAW H19 H N N 50 A1AAW H20 H N N 51 A1AAW H21 H N N 52 A1AAW H22 H N N 53 A1AAW H23 H N N 54 A1AAW H24 H N N 55 A1AAW H25 H N N 56 A1AAW H26 H N N 57 ALA N N N N 58 ALA CA C N S 59 ALA C C N N 60 ALA O O N N 61 ALA CB C N N 62 ALA OXT O N N 63 ALA H H N N 64 ALA H2 H N N 65 ALA HA H N N 66 ALA HB1 H N N 67 ALA HB2 H N N 68 ALA HB3 H N N 69 ALA HXT H N N 70 ARG N N N N 71 ARG CA C N S 72 ARG C C N N 73 ARG O O N N 74 ARG CB C N N 75 ARG CG C N N 76 ARG CD C N N 77 ARG NE N N N 78 ARG CZ C N N 79 ARG NH1 N N N 80 ARG NH2 N N N 81 ARG OXT O N N 82 ARG H H N N 83 ARG H2 H N N 84 ARG HA H N N 85 ARG HB2 H N N 86 ARG HB3 H N N 87 ARG HG2 H N N 88 ARG HG3 H N N 89 ARG HD2 H N N 90 ARG HD3 H N N 91 ARG HE H N N 92 ARG HH11 H N N 93 ARG HH12 H N N 94 ARG HH21 H N N 95 ARG HH22 H N N 96 ARG HXT H N N 97 ASN N N N N 98 ASN CA C N S 99 ASN C C N N 100 ASN O O N N 101 ASN CB C N N 102 ASN CG C N N 103 ASN OD1 O N N 104 ASN ND2 N N N 105 ASN OXT O N N 106 ASN H H N N 107 ASN H2 H N N 108 ASN HA H N N 109 ASN HB2 H N N 110 ASN HB3 H N N 111 ASN HD21 H N N 112 ASN HD22 H N N 113 ASN HXT H N N 114 ASP N N N N 115 ASP CA C N S 116 ASP C C N N 117 ASP O O N N 118 ASP CB C N N 119 ASP CG C N N 120 ASP OD1 O N N 121 ASP OD2 O N N 122 ASP OXT O N N 123 ASP H H N N 124 ASP H2 H N N 125 ASP HA H N N 126 ASP HB2 H N N 127 ASP HB3 H N N 128 ASP HD2 H N N 129 ASP HXT H N N 130 CYS N N N N 131 CYS CA C N R 132 CYS C C N N 133 CYS O O N N 134 CYS CB C N N 135 CYS SG S N N 136 CYS OXT O N N 137 CYS H H N N 138 CYS H2 H N N 139 CYS HA H N N 140 CYS HB2 H N N 141 CYS HB3 H N N 142 CYS HG H N N 143 CYS HXT H N N 144 GDP PB P N N 145 GDP O1B O N N 146 GDP O2B O N N 147 GDP O3B O N N 148 GDP O3A O N N 149 GDP PA P N N 150 GDP O1A O N N 151 GDP O2A O N N 152 GDP "O5'" O N N 153 GDP "C5'" C N N 154 GDP "C4'" C N R 155 GDP "O4'" O N N 156 GDP "C3'" C N S 157 GDP "O3'" O N N 158 GDP "C2'" C N R 159 GDP "O2'" O N N 160 GDP "C1'" C N R 161 GDP N9 N Y N 162 GDP C8 C Y N 163 GDP N7 N Y N 164 GDP C5 C Y N 165 GDP C6 C N N 166 GDP O6 O N N 167 GDP N1 N N N 168 GDP C2 C N N 169 GDP N2 N N N 170 GDP N3 N N N 171 GDP C4 C Y N 172 GDP HOB2 H N N 173 GDP HOB3 H N N 174 GDP HOA2 H N N 175 GDP "H5'" H N N 176 GDP "H5''" H N N 177 GDP "H4'" H N N 178 GDP "H3'" H N N 179 GDP "HO3'" H N N 180 GDP "H2'" H N N 181 GDP "HO2'" H N N 182 GDP "H1'" H N N 183 GDP H8 H N N 184 GDP HN1 H N N 185 GDP HN21 H N N 186 GDP HN22 H N N 187 GLN N N N N 188 GLN CA C N S 189 GLN C C N N 190 GLN O O N N 191 GLN CB C N N 192 GLN CG C N N 193 GLN CD C N N 194 GLN OE1 O N N 195 GLN NE2 N N N 196 GLN OXT O N N 197 GLN H H N N 198 GLN H2 H N N 199 GLN HA H N N 200 GLN HB2 H N N 201 GLN HB3 H N N 202 GLN HG2 H N N 203 GLN HG3 H N N 204 GLN HE21 H N N 205 GLN HE22 H N N 206 GLN HXT H N N 207 GLU N N N N 208 GLU CA C N S 209 GLU C C N N 210 GLU O O N N 211 GLU CB C N N 212 GLU CG C N N 213 GLU CD C N N 214 GLU OE1 O N N 215 GLU OE2 O N N 216 GLU OXT O N N 217 GLU H H N N 218 GLU H2 H N N 219 GLU HA H N N 220 GLU HB2 H N N 221 GLU HB3 H N N 222 GLU HG2 H N N 223 GLU HG3 H N N 224 GLU HE2 H N N 225 GLU HXT H N N 226 GLY N N N N 227 GLY CA C N N 228 GLY C C N N 229 GLY O O N N 230 GLY OXT O N N 231 GLY H H N N 232 GLY H2 H N N 233 GLY HA2 H N N 234 GLY HA3 H N N 235 GLY HXT H N N 236 HIS N N N N 237 HIS CA C N S 238 HIS C C N N 239 HIS O O N N 240 HIS CB C N N 241 HIS CG C Y N 242 HIS ND1 N Y N 243 HIS CD2 C Y N 244 HIS CE1 C Y N 245 HIS NE2 N Y N 246 HIS OXT O N N 247 HIS H H N N 248 HIS H2 H N N 249 HIS HA H N N 250 HIS HB2 H N N 251 HIS HB3 H N N 252 HIS HD1 H N N 253 HIS HD2 H N N 254 HIS HE1 H N N 255 HIS HE2 H N N 256 HIS HXT H N N 257 HOH O O N N 258 HOH H1 H N N 259 HOH H2 H N N 260 ILE N N N N 261 ILE CA C N S 262 ILE C C N N 263 ILE O O N N 264 ILE CB C N S 265 ILE CG1 C N N 266 ILE CG2 C N N 267 ILE CD1 C N N 268 ILE OXT O N N 269 ILE H H N N 270 ILE H2 H N N 271 ILE HA H N N 272 ILE HB H N N 273 ILE HG12 H N N 274 ILE HG13 H N N 275 ILE HG21 H N N 276 ILE HG22 H N N 277 ILE HG23 H N N 278 ILE HD11 H N N 279 ILE HD12 H N N 280 ILE HD13 H N N 281 ILE HXT H N N 282 LEU N N N N 283 LEU CA C N S 284 LEU C C N N 285 LEU O O N N 286 LEU CB C N N 287 LEU CG C N N 288 LEU CD1 C N N 289 LEU CD2 C N N 290 LEU OXT O N N 291 LEU H H N N 292 LEU H2 H N N 293 LEU HA H N N 294 LEU HB2 H N N 295 LEU HB3 H N N 296 LEU HG H N N 297 LEU HD11 H N N 298 LEU HD12 H N N 299 LEU HD13 H N N 300 LEU HD21 H N N 301 LEU HD22 H N N 302 LEU HD23 H N N 303 LEU HXT H N N 304 LYS N N N N 305 LYS CA C N S 306 LYS C C N N 307 LYS O O N N 308 LYS CB C N N 309 LYS CG C N N 310 LYS CD C N N 311 LYS CE C N N 312 LYS NZ N N N 313 LYS OXT O N N 314 LYS H H N N 315 LYS H2 H N N 316 LYS HA H N N 317 LYS HB2 H N N 318 LYS HB3 H N N 319 LYS HG2 H N N 320 LYS HG3 H N N 321 LYS HD2 H N N 322 LYS HD3 H N N 323 LYS HE2 H N N 324 LYS HE3 H N N 325 LYS HZ1 H N N 326 LYS HZ2 H N N 327 LYS HZ3 H N N 328 LYS HXT H N N 329 MET N N N N 330 MET CA C N S 331 MET C C N N 332 MET O O N N 333 MET CB C N N 334 MET CG C N N 335 MET SD S N N 336 MET CE C N N 337 MET OXT O N N 338 MET H H N N 339 MET H2 H N N 340 MET HA H N N 341 MET HB2 H N N 342 MET HB3 H N N 343 MET HG2 H N N 344 MET HG3 H N N 345 MET HE1 H N N 346 MET HE2 H N N 347 MET HE3 H N N 348 MET HXT H N N 349 MG MG MG N N 350 PHE N N N N 351 PHE CA C N S 352 PHE C C N N 353 PHE O O N N 354 PHE CB C N N 355 PHE CG C Y N 356 PHE CD1 C Y N 357 PHE CD2 C Y N 358 PHE CE1 C Y N 359 PHE CE2 C Y N 360 PHE CZ C Y N 361 PHE OXT O N N 362 PHE H H N N 363 PHE H2 H N N 364 PHE HA H N N 365 PHE HB2 H N N 366 PHE HB3 H N N 367 PHE HD1 H N N 368 PHE HD2 H N N 369 PHE HE1 H N N 370 PHE HE2 H N N 371 PHE HZ H N N 372 PHE HXT H N N 373 PRO N N N N 374 PRO CA C N S 375 PRO C C N N 376 PRO O O N N 377 PRO CB C N N 378 PRO CG C N N 379 PRO CD C N N 380 PRO OXT O N N 381 PRO H H N N 382 PRO HA H N N 383 PRO HB2 H N N 384 PRO HB3 H N N 385 PRO HG2 H N N 386 PRO HG3 H N N 387 PRO HD2 H N N 388 PRO HD3 H N N 389 PRO HXT H N N 390 SER N N N N 391 SER CA C N S 392 SER C C N N 393 SER O O N N 394 SER CB C N N 395 SER OG O N N 396 SER OXT O N N 397 SER H H N N 398 SER H2 H N N 399 SER HA H N N 400 SER HB2 H N N 401 SER HB3 H N N 402 SER HG H N N 403 SER HXT H N N 404 THR N N N N 405 THR CA C N S 406 THR C C N N 407 THR O O N N 408 THR CB C N R 409 THR OG1 O N N 410 THR CG2 C N N 411 THR OXT O N N 412 THR H H N N 413 THR H2 H N N 414 THR HA H N N 415 THR HB H N N 416 THR HG1 H N N 417 THR HG21 H N N 418 THR HG22 H N N 419 THR HG23 H N N 420 THR HXT H N N 421 TRP N N N N 422 TRP CA C N S 423 TRP C C N N 424 TRP O O N N 425 TRP CB C N N 426 TRP CG C Y N 427 TRP CD1 C Y N 428 TRP CD2 C Y N 429 TRP NE1 N Y N 430 TRP CE2 C Y N 431 TRP CE3 C Y N 432 TRP CZ2 C Y N 433 TRP CZ3 C Y N 434 TRP CH2 C Y N 435 TRP OXT O N N 436 TRP H H N N 437 TRP H2 H N N 438 TRP HA H N N 439 TRP HB2 H N N 440 TRP HB3 H N N 441 TRP HD1 H N N 442 TRP HE1 H N N 443 TRP HE3 H N N 444 TRP HZ2 H N N 445 TRP HZ3 H N N 446 TRP HH2 H N N 447 TRP HXT H N N 448 TYR N N N N 449 TYR CA C N S 450 TYR C C N N 451 TYR O O N N 452 TYR CB C N N 453 TYR CG C Y N 454 TYR CD1 C Y N 455 TYR CD2 C Y N 456 TYR CE1 C Y N 457 TYR CE2 C Y N 458 TYR CZ C Y N 459 TYR OH O N N 460 TYR OXT O N N 461 TYR H H N N 462 TYR H2 H N N 463 TYR HA H N N 464 TYR HB2 H N N 465 TYR HB3 H N N 466 TYR HD1 H N N 467 TYR HD2 H N N 468 TYR HE1 H N N 469 TYR HE2 H N N 470 TYR HH H N N 471 TYR HXT H N N 472 VAL N N N N 473 VAL CA C N S 474 VAL C C N N 475 VAL O O N N 476 VAL CB C N N 477 VAL CG1 C N N 478 VAL CG2 C N N 479 VAL OXT O N N 480 VAL H H N N 481 VAL H2 H N N 482 VAL HA H N N 483 VAL HB H N N 484 VAL HG11 H N N 485 VAL HG12 H N N 486 VAL HG13 H N N 487 VAL HG21 H N N 488 VAL HG22 H N N 489 VAL HG23 H N N 490 VAL HXT H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AAW C1 C2 sing N N 1 A1AAW C1 C sing N N 2 A1AAW C2 N sing N N 3 A1AAW C2 O doub N N 4 A1AAW C3 C4 sing N N 5 A1AAW C3 N sing N N 6 A1AAW C7 C8 doub Y N 7 A1AAW C7 C20 sing Y N 8 A1AAW C7 N3 sing Y N 9 A1AAW C8 C9 sing Y N 10 A1AAW C9 C10 sing N N 11 A1AAW C9 C18 doub Y N 12 A1AAW C10 C11 doub Y N 13 A1AAW C10 C17 sing Y N 14 A1AAW C11 C12 sing N N 15 A1AAW C11 C13 sing Y N 16 A1AAW C13 C14 doub Y N 17 A1AAW C14 C15 sing Y N 18 A1AAW C15 C17 sing Y N 19 A1AAW C15 N4 doub Y N 20 A1AAW C16 C17 doub Y N 21 A1AAW C16 N5 sing Y N 22 A1AAW C19 C20 doub Y N 23 A1AAW C19 C18 sing Y N 24 A1AAW C20 C5 sing Y N 25 A1AAW C21 C22 sing N N 26 A1AAW C21 N1 sing N N 27 A1AAW C22 N sing N N 28 A1AAW N5 N4 sing Y N 29 A1AAW N3 C6 doub Y N 30 A1AAW C6 N2 sing Y N 31 A1AAW N2 C5 doub Y N 32 A1AAW C5 N1 sing N N 33 A1AAW N1 C4 sing N N 34 A1AAW C18 CL sing N N 35 A1AAW C1 H1 sing N N 36 A1AAW C1 H2 sing N N 37 A1AAW C3 H3 sing N N 38 A1AAW C3 H4 sing N N 39 A1AAW C8 H5 sing N N 40 A1AAW C12 H6 sing N N 41 A1AAW C12 H7 sing N N 42 A1AAW C12 H8 sing N N 43 A1AAW C13 H9 sing N N 44 A1AAW C14 H10 sing N N 45 A1AAW C16 H11 sing N N 46 A1AAW C19 H12 sing N N 47 A1AAW C21 H13 sing N N 48 A1AAW C21 H14 sing N N 49 A1AAW C22 H15 sing N N 50 A1AAW C22 H16 sing N N 51 A1AAW CL H17 sing N N 52 A1AAW CL H18 sing N N 53 A1AAW CL H19 sing N N 54 A1AAW N5 H20 sing N N 55 A1AAW C6 H21 sing N N 56 A1AAW C4 H22 sing N N 57 A1AAW C4 H23 sing N N 58 A1AAW C H24 sing N N 59 A1AAW C H25 sing N N 60 A1AAW C H26 sing N N 61 ALA N CA sing N N 62 ALA N H sing N N 63 ALA N H2 sing N N 64 ALA CA C sing N N 65 ALA CA CB sing N N 66 ALA CA HA sing N N 67 ALA C O doub N N 68 ALA C OXT sing N N 69 ALA CB HB1 sing N N 70 ALA CB HB2 sing N N 71 ALA CB HB3 sing N N 72 ALA OXT HXT sing N N 73 ARG N CA sing N N 74 ARG N H sing N N 75 ARG N H2 sing N N 76 ARG CA C sing N N 77 ARG CA CB sing N N 78 ARG CA HA sing N N 79 ARG C O doub N N 80 ARG C OXT sing N N 81 ARG CB CG sing N N 82 ARG CB HB2 sing N N 83 ARG CB HB3 sing N N 84 ARG CG CD sing N N 85 ARG CG HG2 sing N N 86 ARG CG HG3 sing N N 87 ARG CD NE sing N N 88 ARG CD HD2 sing N N 89 ARG CD HD3 sing N N 90 ARG NE CZ sing N N 91 ARG NE HE sing N N 92 ARG CZ NH1 sing N N 93 ARG CZ NH2 doub N N 94 ARG NH1 HH11 sing N N 95 ARG NH1 HH12 sing N N 96 ARG NH2 HH21 sing N N 97 ARG NH2 HH22 sing N N 98 ARG OXT HXT sing N N 99 ASN N CA sing N N 100 ASN N H sing N N 101 ASN N H2 sing N N 102 ASN CA C sing N N 103 ASN CA CB sing N N 104 ASN CA HA sing N N 105 ASN C O doub N N 106 ASN C OXT sing N N 107 ASN CB CG sing N N 108 ASN CB HB2 sing N N 109 ASN CB HB3 sing N N 110 ASN CG OD1 doub N N 111 ASN CG ND2 sing N N 112 ASN ND2 HD21 sing N N 113 ASN ND2 HD22 sing N N 114 ASN OXT HXT sing N N 115 ASP N CA sing N N 116 ASP N H sing N N 117 ASP N H2 sing N N 118 ASP CA C sing N N 119 ASP CA CB sing N N 120 ASP CA HA sing N N 121 ASP C O doub N N 122 ASP C OXT sing N N 123 ASP CB CG sing N N 124 ASP CB HB2 sing N N 125 ASP CB HB3 sing N N 126 ASP CG OD1 doub N N 127 ASP CG OD2 sing N N 128 ASP OD2 HD2 sing N N 129 ASP OXT HXT sing N N 130 CYS N CA sing N N 131 CYS N H sing N N 132 CYS N H2 sing N N 133 CYS CA C sing N N 134 CYS CA CB sing N N 135 CYS CA HA sing N N 136 CYS C O doub N N 137 CYS C OXT sing N N 138 CYS CB SG sing N N 139 CYS CB HB2 sing N N 140 CYS CB HB3 sing N N 141 CYS SG HG sing N N 142 CYS OXT HXT sing N N 143 GDP PB O1B doub N N 144 GDP PB O2B sing N N 145 GDP PB O3B sing N N 146 GDP PB O3A sing N N 147 GDP O2B HOB2 sing N N 148 GDP O3B HOB3 sing N N 149 GDP O3A PA sing N N 150 GDP PA O1A doub N N 151 GDP PA O2A sing N N 152 GDP PA "O5'" sing N N 153 GDP O2A HOA2 sing N N 154 GDP "O5'" "C5'" sing N N 155 GDP "C5'" "C4'" sing N N 156 GDP "C5'" "H5'" sing N N 157 GDP "C5'" "H5''" sing N N 158 GDP "C4'" "O4'" sing N N 159 GDP "C4'" "C3'" sing N N 160 GDP "C4'" "H4'" sing N N 161 GDP "O4'" "C1'" sing N N 162 GDP "C3'" "O3'" sing N N 163 GDP "C3'" "C2'" sing N N 164 GDP "C3'" "H3'" sing N N 165 GDP "O3'" "HO3'" sing N N 166 GDP "C2'" "O2'" sing N N 167 GDP "C2'" "C1'" sing N N 168 GDP "C2'" "H2'" sing N N 169 GDP "O2'" "HO2'" sing N N 170 GDP "C1'" N9 sing N N 171 GDP "C1'" "H1'" sing N N 172 GDP N9 C8 sing Y N 173 GDP N9 C4 sing Y N 174 GDP C8 N7 doub Y N 175 GDP C8 H8 sing N N 176 GDP N7 C5 sing Y N 177 GDP C5 C6 sing N N 178 GDP C5 C4 doub Y N 179 GDP C6 O6 doub N N 180 GDP C6 N1 sing N N 181 GDP N1 C2 sing N N 182 GDP N1 HN1 sing N N 183 GDP C2 N2 sing N N 184 GDP C2 N3 doub N N 185 GDP N2 HN21 sing N N 186 GDP N2 HN22 sing N N 187 GDP N3 C4 sing N N 188 GLN N CA sing N N 189 GLN N H sing N N 190 GLN N H2 sing N N 191 GLN CA C sing N N 192 GLN CA CB sing N N 193 GLN CA HA sing N N 194 GLN C O doub N N 195 GLN C OXT sing N N 196 GLN CB CG sing N N 197 GLN CB HB2 sing N N 198 GLN CB HB3 sing N N 199 GLN CG CD sing N N 200 GLN CG HG2 sing N N 201 GLN CG HG3 sing N N 202 GLN CD OE1 doub N N 203 GLN CD NE2 sing N N 204 GLN NE2 HE21 sing N N 205 GLN NE2 HE22 sing N N 206 GLN OXT HXT sing N N 207 GLU N CA sing N N 208 GLU N H sing N N 209 GLU N H2 sing N N 210 GLU CA C sing N N 211 GLU CA CB sing N N 212 GLU CA HA sing N N 213 GLU C O doub N N 214 GLU C OXT sing N N 215 GLU CB CG sing N N 216 GLU CB HB2 sing N N 217 GLU CB HB3 sing N N 218 GLU CG CD sing N N 219 GLU CG HG2 sing N N 220 GLU CG HG3 sing N N 221 GLU CD OE1 doub N N 222 GLU CD OE2 sing N N 223 GLU OE2 HE2 sing N N 224 GLU OXT HXT sing N N 225 GLY N CA sing N N 226 GLY N H sing N N 227 GLY N H2 sing N N 228 GLY CA C sing N N 229 GLY CA HA2 sing N N 230 GLY CA HA3 sing N N 231 GLY C O doub N N 232 GLY C OXT sing N N 233 GLY OXT HXT sing N N 234 HIS N CA sing N N 235 HIS N H sing N N 236 HIS N H2 sing N N 237 HIS CA C sing N N 238 HIS CA CB sing N N 239 HIS CA HA sing N N 240 HIS C O doub N N 241 HIS C OXT sing N N 242 HIS CB CG sing N N 243 HIS CB HB2 sing N N 244 HIS CB HB3 sing N N 245 HIS CG ND1 sing Y N 246 HIS CG CD2 doub Y N 247 HIS ND1 CE1 doub Y N 248 HIS ND1 HD1 sing N N 249 HIS CD2 NE2 sing Y N 250 HIS CD2 HD2 sing N N 251 HIS CE1 NE2 sing Y N 252 HIS CE1 HE1 sing N N 253 HIS NE2 HE2 sing N N 254 HIS OXT HXT sing N N 255 HOH O H1 sing N N 256 HOH O H2 sing N N 257 ILE N CA sing N N 258 ILE N H sing N N 259 ILE N H2 sing N N 260 ILE CA C sing N N 261 ILE CA CB sing N N 262 ILE CA HA sing N N 263 ILE C O doub N N 264 ILE C OXT sing N N 265 ILE CB CG1 sing N N 266 ILE CB CG2 sing N N 267 ILE CB HB sing N N 268 ILE CG1 CD1 sing N N 269 ILE CG1 HG12 sing N N 270 ILE CG1 HG13 sing N N 271 ILE CG2 HG21 sing N N 272 ILE CG2 HG22 sing N N 273 ILE CG2 HG23 sing N N 274 ILE CD1 HD11 sing N N 275 ILE CD1 HD12 sing N N 276 ILE CD1 HD13 sing N N 277 ILE OXT HXT sing N N 278 LEU N CA sing N N 279 LEU N H sing N N 280 LEU N H2 sing N N 281 LEU CA C sing N N 282 LEU CA CB sing N N 283 LEU CA HA sing N N 284 LEU C O doub N N 285 LEU C OXT sing N N 286 LEU CB CG sing N N 287 LEU CB HB2 sing N N 288 LEU CB HB3 sing N N 289 LEU CG CD1 sing N N 290 LEU CG CD2 sing N N 291 LEU CG HG sing N N 292 LEU CD1 HD11 sing N N 293 LEU CD1 HD12 sing N N 294 LEU CD1 HD13 sing N N 295 LEU CD2 HD21 sing N N 296 LEU CD2 HD22 sing N N 297 LEU CD2 HD23 sing N N 298 LEU OXT HXT sing N N 299 LYS N CA sing N N 300 LYS N H sing N N 301 LYS N H2 sing N N 302 LYS CA C sing N N 303 LYS CA CB sing N N 304 LYS CA HA sing N N 305 LYS C O doub N N 306 LYS C OXT sing N N 307 LYS CB CG sing N N 308 LYS CB HB2 sing N N 309 LYS CB HB3 sing N N 310 LYS CG CD sing N N 311 LYS CG HG2 sing N N 312 LYS CG HG3 sing N N 313 LYS CD CE sing N N 314 LYS CD HD2 sing N N 315 LYS CD HD3 sing N N 316 LYS CE NZ sing N N 317 LYS CE HE2 sing N N 318 LYS CE HE3 sing N N 319 LYS NZ HZ1 sing N N 320 LYS NZ HZ2 sing N N 321 LYS NZ HZ3 sing N N 322 LYS OXT HXT sing N N 323 MET N CA sing N N 324 MET N H sing N N 325 MET N H2 sing N N 326 MET CA C sing N N 327 MET CA CB sing N N 328 MET CA HA sing N N 329 MET C O doub N N 330 MET C OXT sing N N 331 MET CB CG sing N N 332 MET CB HB2 sing N N 333 MET CB HB3 sing N N 334 MET CG SD sing N N 335 MET CG HG2 sing N N 336 MET CG HG3 sing N N 337 MET SD CE sing N N 338 MET CE HE1 sing N N 339 MET CE HE2 sing N N 340 MET CE HE3 sing N N 341 MET OXT HXT sing N N 342 PHE N CA sing N N 343 PHE N H sing N N 344 PHE N H2 sing N N 345 PHE CA C sing N N 346 PHE CA CB sing N N 347 PHE CA HA sing N N 348 PHE C O doub N N 349 PHE C OXT sing N N 350 PHE CB CG sing N N 351 PHE CB HB2 sing N N 352 PHE CB HB3 sing N N 353 PHE CG CD1 doub Y N 354 PHE CG CD2 sing Y N 355 PHE CD1 CE1 sing Y N 356 PHE CD1 HD1 sing N N 357 PHE CD2 CE2 doub Y N 358 PHE CD2 HD2 sing N N 359 PHE CE1 CZ doub Y N 360 PHE CE1 HE1 sing N N 361 PHE CE2 CZ sing Y N 362 PHE CE2 HE2 sing N N 363 PHE CZ HZ sing N N 364 PHE OXT HXT sing N N 365 PRO N CA sing N N 366 PRO N CD sing N N 367 PRO N H sing N N 368 PRO CA C sing N N 369 PRO CA CB sing N N 370 PRO CA HA sing N N 371 PRO C O doub N N 372 PRO C OXT sing N N 373 PRO CB CG sing N N 374 PRO CB HB2 sing N N 375 PRO CB HB3 sing N N 376 PRO CG CD sing N N 377 PRO CG HG2 sing N N 378 PRO CG HG3 sing N N 379 PRO CD HD2 sing N N 380 PRO CD HD3 sing N N 381 PRO OXT HXT sing N N 382 SER N CA sing N N 383 SER N H sing N N 384 SER N H2 sing N N 385 SER CA C sing N N 386 SER CA CB sing N N 387 SER CA HA sing N N 388 SER C O doub N N 389 SER C OXT sing N N 390 SER CB OG sing N N 391 SER CB HB2 sing N N 392 SER CB HB3 sing N N 393 SER OG HG sing N N 394 SER OXT HXT sing N N 395 THR N CA sing N N 396 THR N H sing N N 397 THR N H2 sing N N 398 THR CA C sing N N 399 THR CA CB sing N N 400 THR CA HA sing N N 401 THR C O doub N N 402 THR C OXT sing N N 403 THR CB OG1 sing N N 404 THR CB CG2 sing N N 405 THR CB HB sing N N 406 THR OG1 HG1 sing N N 407 THR CG2 HG21 sing N N 408 THR CG2 HG22 sing N N 409 THR CG2 HG23 sing N N 410 THR OXT HXT sing N N 411 TRP N CA sing N N 412 TRP N H sing N N 413 TRP N H2 sing N N 414 TRP CA C sing N N 415 TRP CA CB sing N N 416 TRP CA HA sing N N 417 TRP C O doub N N 418 TRP C OXT sing N N 419 TRP CB CG sing N N 420 TRP CB HB2 sing N N 421 TRP CB HB3 sing N N 422 TRP CG CD1 doub Y N 423 TRP CG CD2 sing Y N 424 TRP CD1 NE1 sing Y N 425 TRP CD1 HD1 sing N N 426 TRP CD2 CE2 doub Y N 427 TRP CD2 CE3 sing Y N 428 TRP NE1 CE2 sing Y N 429 TRP NE1 HE1 sing N N 430 TRP CE2 CZ2 sing Y N 431 TRP CE3 CZ3 doub Y N 432 TRP CE3 HE3 sing N N 433 TRP CZ2 CH2 doub Y N 434 TRP CZ2 HZ2 sing N N 435 TRP CZ3 CH2 sing Y N 436 TRP CZ3 HZ3 sing N N 437 TRP CH2 HH2 sing N N 438 TRP OXT HXT sing N N 439 TYR N CA sing N N 440 TYR N H sing N N 441 TYR N H2 sing N N 442 TYR CA C sing N N 443 TYR CA CB sing N N 444 TYR CA HA sing N N 445 TYR C O doub N N 446 TYR C OXT sing N N 447 TYR CB CG sing N N 448 TYR CB HB2 sing N N 449 TYR CB HB3 sing N N 450 TYR CG CD1 doub Y N 451 TYR CG CD2 sing Y N 452 TYR CD1 CE1 sing Y N 453 TYR CD1 HD1 sing N N 454 TYR CD2 CE2 doub Y N 455 TYR CD2 HD2 sing N N 456 TYR CE1 CZ doub Y N 457 TYR CE1 HE1 sing N N 458 TYR CE2 CZ sing Y N 459 TYR CE2 HE2 sing N N 460 TYR CZ OH sing N N 461 TYR OH HH sing N N 462 TYR OXT HXT sing N N 463 VAL N CA sing N N 464 VAL N H sing N N 465 VAL N H2 sing N N 466 VAL CA C sing N N 467 VAL CA CB sing N N 468 VAL CA HA sing N N 469 VAL C O doub N N 470 VAL C OXT sing N N 471 VAL CB CG1 sing N N 472 VAL CB CG2 sing N N 473 VAL CB HB sing N N 474 VAL CG1 HG11 sing N N 475 VAL CG1 HG12 sing N N 476 VAL CG1 HG13 sing N N 477 VAL CG2 HG21 sing N N 478 VAL CG2 HG22 sing N N 479 VAL CG2 HG23 sing N N 480 VAL OXT HXT sing N N 481 # _em_admin.current_status REL _em_admin.deposition_date 2023-12-27 _em_admin.deposition_site RCSB _em_admin.entry_id 8VGQ _em_admin.last_update 2024-10-30 _em_admin.map_release_date 2024-10-30 _em_admin.title 'CryoEM structure of GNE-1952-alkylated KRAS G12C in complex with engineered conformationally rigid Fab 2H11.4DS' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM ? 1 HEPES 1 100 mM NaCl 2 'sodium chloride' 1 5 mM MgCl2 3 'magnesium chloride' 1 5 uM ? 4 GDP # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 2 3 9606 'Homo sapiens' ? ? ? ? ? ? ? 3 4 9606 'Homo sapiens' ? ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain ? 2 3 562 'Escherichia coli' ? ? ? 3 4 10029 'Cricetulus griseus' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40.3 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ISOLDE ? 'MODEL FITTING' ? 8 ? 1 ? 'UCSF ChimeraX' ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX 1.21rc1_5049 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4ZFG _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8VGQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL MG N O P S # loop_