HEADER OXIDOREDUCTASE 05-JAN-24 8VJ5 TITLE PEROXIDE-SOAKED MNSOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, MNSOD, SOD2, PCET EXPDTA X-RAY DIFFRACTION AUTHOR J.AZADMANESH,K.SLOBODNIK,L.R.STRUBLE,W.E.LUTZ,K.L.WEISS,D.A.A.MYLES, AUTHOR 2 T.KROLL,G.E.O.BORGSTAHL REVDAT 1 31-JUL-24 8VJ5 0 JRNL AUTH J.AZADMANESH,K.SLOBODNIK,L.R.STRUBLE,W.E.LUTZ,L.COATES, JRNL AUTH 2 K.L.WEISS,D.A.A.MYLES,T.KROLL,G.E.O.BORGSTAHL JRNL TITL REVEALING THE ATOMIC AND ELECTRONIC MECHANISM OF HUMAN JRNL TITL 2 MANGANESE SUPEROXIDE DISMUTASE PRODUCT INHIBITION. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 38328249 JRNL DOI 10.1101/2024.01.26.577433 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 3 NUMBER OF REFLECTIONS : 35998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1000 - 4.1400 0.92 3230 169 0.1914 0.1892 REMARK 3 2 4.1300 - 3.2800 0.91 3004 158 0.1717 0.1672 REMARK 3 3 3.2800 - 2.8700 0.92 2996 158 0.2003 0.2291 REMARK 3 4 2.8700 - 2.6100 0.91 2882 153 0.2119 0.2487 REMARK 3 5 2.6100 - 2.4200 0.87 2773 145 0.2049 0.2207 REMARK 3 6 2.4200 - 2.2800 0.84 2662 140 0.1914 0.2448 REMARK 3 7 2.2800 - 2.1600 0.82 2573 136 0.1924 0.2196 REMARK 3 8 2.1600 - 2.0700 0.80 2497 131 0.1982 0.2314 REMARK 3 9 2.0700 - 1.9900 0.78 2459 129 0.2119 0.2656 REMARK 3 10 1.9900 - 1.9200 0.77 2411 127 0.2165 0.2818 REMARK 3 11 1.9200 - 1.8600 0.75 2344 124 0.2157 0.2426 REMARK 3 12 1.8600 - 1.8100 0.73 2265 119 0.2314 0.2388 REMARK 3 13 1.8100 - 1.7600 0.68 2113 111 0.2726 0.3409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3278 REMARK 3 ANGLE : 0.572 4451 REMARK 3 CHIRALITY : 0.041 455 REMARK 3 PLANARITY : 0.004 579 REMARK 3 DIHEDRAL : 11.083 1177 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 0 through 44 or REMARK 3 resid 46 through 198 or resid 201 through REMARK 3 207)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 0 through 44 or REMARK 3 resid 46 through 198 or resid 201 through REMARK 3 207)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000280375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38708 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M POTASSIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.87600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 157.75200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.31400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 197.19000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.43800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.87600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 157.75200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 197.19000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.31400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.43800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 39.17400 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 67.85136 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 197.19000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 384 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 360 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 591 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 347 O HOH B 541 1.82 REMARK 500 O HOH A 501 O HOH A 517 1.84 REMARK 500 O HOH A 430 O HOH A 504 1.87 REMARK 500 O HOH A 303 O HOH A 449 1.94 REMARK 500 OD1 ASP A 175 O HOH A 301 1.97 REMARK 500 O HOH A 424 O HOH A 508 1.98 REMARK 500 O HOH B 324 O HOH B 399 2.00 REMARK 500 OH TYR A 11 O HOH A 302 2.07 REMARK 500 O HOH B 392 O HOH B 589 2.07 REMARK 500 O HOH A 303 O HOH A 368 2.07 REMARK 500 O HOH B 579 O HOH B 599 2.08 REMARK 500 O MET A 0 O HOH A 303 2.08 REMARK 500 NZ LYS A 110 O HOH A 304 2.09 REMARK 500 O HOH A 337 O HOH A 548 2.09 REMARK 500 O HOH A 311 O HOH A 320 2.10 REMARK 500 O HOH B 585 O HOH B 603 2.13 REMARK 500 O HOH B 433 O HOH B 576 2.13 REMARK 500 O3 PO4 B 203 O HOH B 301 2.14 REMARK 500 O HOH A 459 O HOH A 574 2.14 REMARK 500 O HOH B 452 O HOH B 528 2.15 REMARK 500 O HOH B 313 O HOH B 443 2.16 REMARK 500 O HOH B 505 O HOH B 571 2.17 REMARK 500 OH TYR B 11 O HOH B 302 2.18 REMARK 500 OD2 ASP A 175 O HOH A 305 2.18 REMARK 500 O GLY B 102 O HOH B 303 2.18 REMARK 500 O HOH B 538 O HOH B 574 2.18 REMARK 500 O HOH A 321 O HOH A 495 2.19 REMARK 500 O HOH B 539 O HOH B 608 2.19 REMARK 500 O HOH B 607 O HOH B 610 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 370 O HOH B 488 10665 1.82 REMARK 500 O HOH A 511 O HOH A 522 10665 2.02 REMARK 500 O HOH A 574 O HOH B 601 6655 2.05 REMARK 500 O HOH A 590 O HOH B 588 9655 2.07 REMARK 500 O HOH A 506 O HOH A 514 10665 2.09 REMARK 500 O HOH A 312 O HOH B 493 6655 2.12 REMARK 500 O HOH A 350 O HOH A 483 10665 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 -121.72 56.85 REMARK 500 TYR A 165 -13.92 -150.33 REMARK 500 LYS A 170 -134.66 55.29 REMARK 500 LYS B 1 119.78 65.30 REMARK 500 ASN B 142 -121.53 56.30 REMARK 500 TYR B 165 -14.54 -150.37 REMARK 500 LYS B 170 -135.17 54.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 595 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 596 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B 612 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 613 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 614 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 615 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 616 DISTANCE = 8.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 74 NE2 89.3 REMARK 620 3 ASP A 159 OD2 85.6 108.8 REMARK 620 4 HIS A 163 NE2 92.3 132.7 118.5 REMARK 620 5 PEO A 202 O2 163.5 78.0 108.3 88.8 REMARK 620 6 PEO A 202 O1 158.4 101.5 73.3 93.9 37.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 74 NE2 87.7 REMARK 620 3 ASP B 159 OD2 85.4 110.3 REMARK 620 4 HIS B 163 NE2 94.0 133.0 116.7 REMARK 620 5 PEO B 202 O1 153.2 105.2 68.2 93.9 REMARK 620 6 PEO B 202 O2 168.4 81.4 102.0 90.6 36.4 REMARK 620 N 1 2 3 4 5 DBREF 8VJ5 A 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 8VJ5 B 1 198 UNP P04179 SODM_HUMAN 25 222 SEQADV 8VJ5 MET A 0 UNP P04179 INITIATING METHIONINE SEQADV 8VJ5 MET B 0 UNP P04179 INITIATING METHIONINE SEQRES 1 A 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 A 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 A 199 HIS HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU SEQRES 4 A 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 A 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 A 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 A 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 A 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 A 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 A 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 A 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 A 199 GLN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 A 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 A 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 A 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 A 199 ALA CYS LYS LYS SEQRES 1 B 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 B 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 B 199 HIS HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU SEQRES 4 B 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 B 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 B 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 B 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 B 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 B 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 B 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 B 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 B 199 GLN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 B 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 B 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 B 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 B 199 ALA CYS LYS LYS HET MN A 201 1 HET PEO A 202 2 HET PO4 A 203 5 HET MN B 201 1 HET PEO B 202 2 HET PO4 B 203 5 HETNAM MN MANGANESE (II) ION HETNAM PEO HYDROGEN PEROXIDE HETNAM PO4 PHOSPHATE ION FORMUL 3 MN 2(MN 2+) FORMUL 4 PEO 2(H2 O2) FORMUL 5 PO4 2(O4 P 3-) FORMUL 9 HOH *614(H2 O) HELIX 1 AA1 ASN A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 GLY A 52 1 24 HELIX 3 AA3 ASP A 53 ASN A 80 1 28 HELIX 4 AA4 LYS A 90 GLY A 102 1 13 HELIX 5 AA5 SER A 103 GLY A 117 1 15 HELIX 6 AA6 PRO A 145 GLY A 151 1 7 HELIX 7 AA7 TRP A 161 ALA A 164 5 4 HELIX 8 AA8 TYR A 165 LYS A 170 1 6 HELIX 9 AA9 VAL A 172 TRP A 181 1 10 HELIX 10 AB1 ASN A 182 ILE A 184 5 3 HELIX 11 AB2 ASN A 185 LYS A 197 1 13 HELIX 12 AB3 ASN B 19 LYS B 29 1 11 HELIX 13 AB4 LYS B 29 GLY B 52 1 24 HELIX 14 AB5 ASP B 53 ASN B 80 1 28 HELIX 15 AB6 LYS B 90 GLY B 102 1 13 HELIX 16 AB7 SER B 103 GLY B 117 1 15 HELIX 17 AB8 PRO B 145 GLY B 151 1 7 HELIX 18 AB9 TRP B 161 ALA B 164 5 4 HELIX 19 AC1 TYR B 165 LYS B 170 1 6 HELIX 20 AC2 VAL B 172 TRP B 181 1 10 HELIX 21 AC3 ASN B 182 ILE B 184 5 3 HELIX 22 AC4 ASN B 185 CYS B 196 1 12 SHEET 1 AA1 3 HIS A 134 PRO A 141 0 SHEET 2 AA1 3 GLY A 122 ASN A 129 -1 N GLY A 127 O GLN A 136 SHEET 3 AA1 3 ILE A 153 ASP A 159 -1 O LEU A 156 N LEU A 126 SHEET 1 AA2 3 HIS B 134 PRO B 141 0 SHEET 2 AA2 3 GLY B 122 ASN B 129 -1 N GLY B 127 O GLN B 136 SHEET 3 AA2 3 ILE B 153 ASP B 159 -1 O ILE B 158 N GLY B 124 LINK NE2 HIS A 26 MN MN A 201 1555 1555 2.16 LINK NE2 HIS A 74 MN MN A 201 1555 1555 2.18 LINK OD2 ASP A 159 MN MN A 201 1555 1555 2.07 LINK NE2 HIS A 163 MN MN A 201 1555 1555 2.21 LINK MN MN A 201 O2 PEO A 202 1555 1555 2.19 LINK MN MN A 201 O1 PEO A 202 1555 1555 2.20 LINK NE2 HIS B 26 MN MN B 201 1555 1555 2.15 LINK NE2 HIS B 74 MN MN B 201 1555 1555 2.18 LINK OD2 ASP B 159 MN MN B 201 1555 1555 2.06 LINK NE2 HIS B 163 MN MN B 201 1555 1555 2.25 LINK MN MN B 201 O1 PEO B 202 1555 1555 2.10 LINK MN MN B 201 O2 PEO B 202 1555 1555 2.34 CISPEP 1 GLU A 15 PRO A 16 0 5.71 CISPEP 2 GLU B 15 PRO B 16 0 3.70 CRYST1 78.348 78.348 236.628 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012764 0.007369 0.000000 0.00000 SCALE2 0.000000 0.014738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004226 0.00000 MTRIX1 1 -0.992022 0.014091 -0.125273 72.02846 1 MTRIX2 1 0.011390 -0.979649 -0.200393 74.40168 1 MTRIX3 1 -0.125547 -0.200221 0.971674 12.36960 1