HEADER VIRUS LIKE PARTICLE 07-JAN-24 8VJO TITLE CRYO-EM STRUCTURE OF MYXOCOCCUS XANTHUS ENCA ENCAPSULIN SHELL LOADED TITLE 2 WITH ENCD CARGO COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENCA; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENCAPSULIN NANOCOMPARTMENT CARGO PROTEIN ENCD; COMPND 7 CHAIN: F, G, H; COMPND 8 FRAGMENT: TARGETING PEPTIDE: RESIDUES 106-114 (99-107 IN UNIPROT COMPND 9 NUMBERING); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 34; SOURCE 4 GENE: MXAN_3556; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 9 ORGANISM_TAXID: 34; SOURCE 10 GENE: ENCD, MXAN_2410; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENCAPSULIN, ENCA, ENCD, FLAVIN, FLAVIN MONONUCLEOTIDE, IRON, KEYWDS 2 FERROXIDASE, FERRITIN, FERRIC REDUCTASE, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR E.EREN REVDAT 4 05-JUN-24 8VJO 1 JRNL REVDAT 3 29-MAY-24 8VJO 1 JRNL REVDAT 2 22-MAY-24 8VJO 1 JRNL REVDAT 1 08-MAY-24 8VJO 0 JRNL AUTH E.EREN,N.R.WATTS,J.F.CONWAY,P.T.WINGFIELD JRNL TITL MYXOCOCCUS XANTHUS ENCAPSULIN CARGO PROTEIN ENCD IS A JRNL TITL 2 FLAVIN-BINDING PROTEIN WITH FERRIC REDUCTASE ACTIVITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 26121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38748579 JRNL DOI 10.1073/PNAS.2400426121 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, RELION, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 47437 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000280340. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ICOSAHEDRAL ENCAPSULIN ENCA REMARK 245 PARTICLES IN COMPLEX WITH CARGO REMARK 245 PROTEIN ENCD REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.30 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, B, G, C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.861698 0.425488 0.276472 -132.75268 REMARK 350 BIOMT2 2 -0.425488 0.309017 0.850570 62.62496 REMARK 350 BIOMT3 2 0.276472 -0.850570 0.447319 265.37887 REMARK 350 BIOMT1 3 0.637921 0.262966 0.723814 -147.12937 REMARK 350 BIOMT2 3 -0.262966 -0.809017 0.525681 364.18499 REMARK 350 BIOMT3 3 0.723814 -0.525681 -0.446938 294.11856 REMARK 350 BIOMT1 4 0.637921 -0.262966 0.723814 -23.26198 REMARK 350 BIOMT2 4 0.262966 -0.809017 -0.525681 487.93436 REMARK 350 BIOMT3 4 0.723814 0.525681 -0.446938 46.50178 REMARK 350 BIOMT1 5 0.861698 -0.425488 0.276472 67.66898 REMARK 350 BIOMT2 5 0.425488 0.309017 -0.850570 262.85566 REMARK 350 BIOMT3 5 0.276472 0.850570 0.447319 -135.27348 REMARK 350 BIOMT1 6 0.809017 0.587785 0.000345 -93.53606 REMARK 350 BIOMT2 6 0.587785 -0.809017 0.000112 287.59811 REMARK 350 BIOMT3 6 0.000345 0.000112 -1.000000 470.93239 REMARK 350 BIOMT1 7 0.447128 0.525569 0.723777 -164.03368 REMARK 350 BIOMT2 7 0.850751 0.000000 -0.525569 158.93312 REMARK 350 BIOMT3 7 -0.276223 0.850751 -0.447128 205.51477 REMARK 350 BIOMT1 8 0.361771 -0.262966 0.894411 1.59777 REMARK 350 BIOMT2 8 0.587785 0.809017 0.000112 -93.48125 REMARK 350 BIOMT3 8 -0.723623 0.525681 0.447246 176.80392 REMARK 350 BIOMT1 9 0.670906 -0.688091 0.276436 174.46126 REMARK 350 BIOMT2 9 0.162298 0.500000 0.850682 -120.81692 REMARK 350 BIOMT3 9 -0.723564 -0.525862 0.447128 424.47726 REMARK 350 BIOMT1 10 0.947319 -0.162298 -0.276127 115.66532 REMARK 350 BIOMT2 10 0.162298 -0.500000 0.850682 114.70308 REMARK 350 BIOMT3 10 -0.276127 -0.850682 -0.447319 606.25865 REMARK 350 BIOMT1 11 -0.947319 -0.162298 0.276127 431.82339 REMARK 350 BIOMT2 11 -0.162298 -0.500000 -0.850682 591.85692 REMARK 350 BIOMT3 11 0.276127 -0.850682 0.447319 265.48648 REMARK 350 BIOMT1 12 -0.670906 -0.688091 -0.276436 620.69700 REMARK 350 BIOMT2 12 -0.162298 0.500000 -0.850682 356.33693 REMARK 350 BIOMT3 12 0.723564 -0.525862 -0.447128 294.26492 REMARK 350 BIOMT1 13 -0.361771 -0.262966 -0.894411 593.30963 REMARK 350 BIOMT2 13 -0.587785 0.809017 -0.000112 183.44189 REMARK 350 BIOMT3 13 0.723623 0.525681 -0.447246 46.61932 REMARK 350 BIOMT1 14 -0.447128 0.525569 -0.723777 387.50970 REMARK 350 BIOMT2 14 -0.850751 0.000000 0.525569 312.10687 REMARK 350 BIOMT3 14 0.276223 0.850751 0.447128 -135.21251 REMARK 350 BIOMT1 15 -0.809017 0.587785 -0.000345 287.70572 REMARK 350 BIOMT2 15 -0.587785 -0.809017 -0.000112 564.52124 REMARK 350 BIOMT3 15 -0.000345 0.000112 1.000000 0.05483 REMARK 350 BIOMT1 16 -0.861698 -0.425488 -0.276472 603.79269 REMARK 350 BIOMT2 16 -0.425488 0.309017 0.850570 62.62496 REMARK 350 BIOMT3 16 -0.276472 0.850570 -0.447319 205.66114 REMARK 350 BIOMT1 17 -0.637921 -0.262966 -0.723814 618.16938 REMARK 350 BIOMT2 17 -0.262966 -0.809017 0.525681 364.18498 REMARK 350 BIOMT3 17 -0.723814 0.525681 0.446938 176.92144 REMARK 350 BIOMT1 18 -0.637921 0.262966 -0.723814 494.30199 REMARK 350 BIOMT2 18 0.262966 -0.809017 -0.525681 487.93437 REMARK 350 BIOMT3 18 -0.723814 -0.525681 0.446938 424.53821 REMARK 350 BIOMT1 19 -0.861698 0.425488 -0.276472 403.37103 REMARK 350 BIOMT2 19 0.425488 0.309017 -0.850570 262.85568 REMARK 350 BIOMT3 19 -0.276472 -0.850570 -0.447319 606.31349 REMARK 350 BIOMT1 20 -1.000000 0.000000 0.000000 471.04001 REMARK 350 BIOMT2 20 0.000000 1.000000 0.000000 0.00001 REMARK 350 BIOMT3 20 0.000000 0.000000 -1.000000 471.04002 REMARK 350 BIOMT1 21 0.447128 -0.525569 0.723777 83.53031 REMARK 350 BIOMT2 21 -0.850751 0.000000 0.525569 312.10689 REMARK 350 BIOMT3 21 -0.276223 -0.850751 -0.447128 606.25251 REMARK 350 BIOMT1 22 0.809017 -0.587785 0.000345 183.33429 REMARK 350 BIOMT2 22 -0.587785 -0.809017 -0.000112 564.52125 REMARK 350 BIOMT3 22 0.000345 -0.000112 -1.000000 470.98516 REMARK 350 BIOMT1 23 0.947319 0.162298 -0.276127 39.21662 REMARK 350 BIOMT2 23 -0.162298 -0.500000 -0.850682 591.85692 REMARK 350 BIOMT3 23 -0.276127 0.850682 -0.447319 205.55350 REMARK 350 BIOMT1 24 0.670906 0.688091 0.276436 -149.65699 REMARK 350 BIOMT2 24 -0.162298 0.500000 -0.850682 356.33693 REMARK 350 BIOMT3 24 -0.723564 0.525862 0.447128 176.77508 REMARK 350 BIOMT1 25 0.361771 0.262966 0.894411 -122.26962 REMARK 350 BIOMT2 25 -0.587785 0.809017 -0.000112 183.44190 REMARK 350 BIOMT3 25 -0.723623 -0.525681 0.447246 424.42068 REMARK 350 BIOMT1 26 0.053062 0.688091 -0.723682 231.40522 REMARK 350 BIOMT2 26 -0.688091 -0.500000 -0.525862 639.19022 REMARK 350 BIOMT3 26 -0.723682 0.525862 0.446938 176.84771 REMARK 350 BIOMT1 27 -0.447128 0.850751 0.276223 75.40282 REMARK 350 BIOMT2 27 -0.525569 0.000000 -0.850751 559.67089 REMARK 350 BIOMT3 27 -0.723777 -0.525569 0.447128 424.45836 REMARK 350 BIOMT1 28 -0.670906 -0.162298 0.723564 261.34222 REMARK 350 BIOMT2 28 -0.688091 0.500000 -0.525862 403.67023 REMARK 350 BIOMT3 28 -0.276436 -0.850682 -0.447128 606.28641 REMARK 350 BIOMT1 29 -0.309017 -0.951056 0.000132 532.26149 REMARK 350 BIOMT2 29 -0.951056 0.309017 -0.000181 386.77585 REMARK 350 BIOMT3 29 0.000132 -0.000181 -1.000000 471.05168 REMARK 350 BIOMT1 30 0.138420 -0.425488 -0.894316 513.75941 REMARK 350 BIOMT2 30 -0.951057 -0.309017 -0.000181 532.33521 REMARK 350 BIOMT3 30 -0.276282 0.850570 -0.447437 205.64397 REMARK 350 BIOMT1 31 -0.138420 -0.425488 0.894316 157.70225 REMARK 350 BIOMT2 31 0.951057 -0.309017 0.000181 84.26414 REMARK 350 BIOMT3 31 0.276282 0.850570 0.447437 -135.25631 REMARK 350 BIOMT1 32 0.309017 -0.951056 -0.000132 386.76416 REMARK 350 BIOMT2 32 0.951056 0.309017 0.000181 -61.29522 REMARK 350 BIOMT3 32 -0.000132 -0.000181 1.000000 0.07373 REMARK 350 BIOMT1 33 0.670906 -0.162298 -0.723564 286.14649 REMARK 350 BIOMT2 33 0.688091 0.500000 0.525862 -168.15022 REMARK 350 BIOMT3 33 0.276436 -0.850682 0.447128 265.45873 REMARK 350 BIOMT1 34 0.447128 0.850751 -0.276223 -5.10056 REMARK 350 BIOMT2 34 0.525569 0.000000 0.850751 -88.63088 REMARK 350 BIOMT3 34 0.723777 -0.525569 -0.447128 294.14564 REMARK 350 BIOMT1 35 -0.053062 0.688091 0.723682 -84.48346 REMARK 350 BIOMT2 35 0.688091 -0.500000 0.525862 67.36977 REMARK 350 BIOMT3 35 0.723682 0.525862 -0.446938 46.49012 REMARK 350 BIOMT1 36 -0.361771 0.262966 -0.894411 469.44224 REMARK 350 BIOMT2 36 0.587785 0.809017 0.000112 -93.48125 REMARK 350 BIOMT3 36 0.723623 -0.525681 -0.447246 294.23610 REMARK 350 BIOMT1 37 -0.670906 0.688091 -0.276436 296.57875 REMARK 350 BIOMT2 37 0.162298 0.500000 0.850682 -120.81693 REMARK 350 BIOMT3 37 0.723564 0.525862 -0.447128 46.56277 REMARK 350 BIOMT1 38 -0.947319 0.162298 0.276127 355.37469 REMARK 350 BIOMT2 38 0.162298 -0.500000 0.850682 114.70306 REMARK 350 BIOMT3 38 0.276127 0.850682 0.447319 -135.21863 REMARK 350 BIOMT1 39 -0.809017 -0.587785 -0.000345 564.57607 REMARK 350 BIOMT2 39 0.587785 -0.809017 0.000112 287.59810 REMARK 350 BIOMT3 39 -0.000345 -0.000112 1.000000 0.10762 REMARK 350 BIOMT1 40 -0.447128 -0.525569 -0.723777 635.07369 REMARK 350 BIOMT2 40 0.850751 0.000000 -0.525569 158.93312 REMARK 350 BIOMT3 40 0.276223 -0.850751 0.447128 265.52524 REMARK 350 BIOMT1 41 0.447128 -0.850751 -0.276223 395.63719 REMARK 350 BIOMT2 41 -0.525569 0.000000 -0.850751 559.67088 REMARK 350 BIOMT3 41 0.723777 0.525569 -0.447128 46.58163 REMARK 350 BIOMT1 42 0.670906 0.162298 -0.723564 209.69779 REMARK 350 BIOMT2 42 -0.688091 0.500000 -0.525862 403.67021 REMARK 350 BIOMT3 42 0.276436 0.850682 0.447128 -135.24641 REMARK 350 BIOMT1 43 0.309017 0.951056 -0.000132 -61.22148 REMARK 350 BIOMT2 43 -0.951056 0.309017 -0.000181 386.77584 REMARK 350 BIOMT3 43 -0.000132 0.000181 1.000000 -0.01168 REMARK 350 BIOMT1 44 -0.138420 0.425488 0.894316 -42.71940 REMARK 350 BIOMT2 44 -0.951056 -0.309017 -0.000181 532.33521 REMARK 350 BIOMT3 44 0.276282 -0.850570 0.447437 265.39602 REMARK 350 BIOMT1 45 -0.053062 -0.688091 0.723682 239.63479 REMARK 350 BIOMT2 45 -0.688091 -0.500000 -0.525862 639.19022 REMARK 350 BIOMT3 45 0.723682 -0.525862 -0.446938 294.19228 REMARK 350 BIOMT1 46 -0.138420 0.951057 0.276282 -20.94203 REMARK 350 BIOMT2 46 -0.425488 -0.309017 0.850570 208.18432 REMARK 350 BIOMT3 46 0.894316 0.000181 0.447437 -80.53221 REMARK 350 BIOMT1 47 -0.447555 0.000000 0.894257 130.31273 REMARK 350 BIOMT2 47 0.000000 -1.000000 0.000000 471.03999 REMARK 350 BIOMT3 47 0.894257 0.000000 0.447555 -80.50338 REMARK 350 BIOMT1 48 -0.138420 -0.951056 0.276282 427.04361 REMARK 350 BIOMT2 48 0.425488 -0.309017 -0.850570 408.41503 REMARK 350 BIOMT3 48 0.894316 -0.000181 0.447437 -80.44682 REMARK 350 BIOMT1 49 0.361771 -0.587785 -0.723623 459.17863 REMARK 350 BIOMT2 49 0.262966 0.809017 -0.525681 106.85501 REMARK 350 BIOMT3 49 0.894411 -0.000112 0.447246 -80.44068 REMARK 350 BIOMT1 50 0.361771 0.587785 -0.723623 182.30827 REMARK 350 BIOMT2 50 -0.262966 0.809017 0.525681 -16.89438 REMARK 350 BIOMT3 50 0.894411 0.000112 0.447246 -80.49346 REMARK 350 BIOMT1 51 -0.361771 0.587785 0.723623 11.86138 REMARK 350 BIOMT2 51 0.262966 0.809017 -0.525681 106.85502 REMARK 350 BIOMT3 51 -0.894411 0.000112 -0.447246 551.48070 REMARK 350 BIOMT1 52 -0.361771 -0.587785 0.723623 288.73173 REMARK 350 BIOMT2 52 -0.262966 0.809017 0.525681 -16.89436 REMARK 350 BIOMT3 52 -0.894411 -0.000112 -0.447246 551.53348 REMARK 350 BIOMT1 53 0.138420 -0.951057 -0.276282 491.98204 REMARK 350 BIOMT2 53 -0.425488 -0.309017 0.850570 208.18433 REMARK 350 BIOMT3 53 -0.894316 -0.000181 -0.447437 551.57222 REMARK 350 BIOMT1 54 0.447555 0.000000 -0.894257 340.72728 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 471.04000 REMARK 350 BIOMT3 54 -0.894257 0.000000 -0.447555 551.54338 REMARK 350 BIOMT1 55 0.138420 0.951056 -0.276282 43.99640 REMARK 350 BIOMT2 55 0.425488 -0.309017 -0.850570 408.41504 REMARK 350 BIOMT3 55 -0.894316 0.000181 -0.447437 551.48681 REMARK 350 BIOMT1 56 0.053062 -0.688091 -0.723682 555.52347 REMARK 350 BIOMT2 56 0.688091 -0.500000 0.525862 67.36978 REMARK 350 BIOMT3 56 -0.723682 -0.525862 0.446938 424.54989 REMARK 350 BIOMT1 57 0.138420 0.425488 -0.894316 313.33776 REMARK 350 BIOMT2 57 0.951056 -0.309017 0.000181 84.26416 REMARK 350 BIOMT3 57 -0.276282 -0.850570 -0.447437 606.29633 REMARK 350 BIOMT1 58 -0.309017 0.951056 0.000132 84.27585 REMARK 350 BIOMT2 58 0.951056 0.309017 0.000181 -61.29520 REMARK 350 BIOMT3 58 0.000132 0.000181 -1.000000 470.96629 REMARK 350 BIOMT1 59 -0.670906 0.162298 0.723564 184.89351 REMARK 350 BIOMT2 59 0.688091 0.500000 0.525862 -168.15022 REMARK 350 BIOMT3 59 -0.276436 0.850682 -0.447128 205.58129 REMARK 350 BIOMT1 60 -0.447128 -0.850751 0.276223 476.14056 REMARK 350 BIOMT2 60 0.525569 0.000000 0.850751 -88.63089 REMARK 350 BIOMT3 60 -0.723777 0.525569 0.447128 176.89438 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 MET A -6 REMARK 465 PRO A -5 REMARK 465 LEU A -4 REMARK 465 GLU A -3 REMARK 465 PRO A -2 REMARK 465 HIS A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 279 REMARK 465 GLY A 280 REMARK 465 ALA A 281 REMARK 465 GLY A 282 REMARK 465 ALA A 283 REMARK 465 THR A 284 REMARK 465 GLU A 285 REMARK 465 ARG A 286 REMARK 465 ARG A 287 REMARK 465 MET B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 MET B -6 REMARK 465 PRO B -5 REMARK 465 LEU B -4 REMARK 465 GLU B -3 REMARK 465 PRO B -2 REMARK 465 HIS B -1 REMARK 465 PHE B 0 REMARK 465 MET B 1 REMARK 465 GLY B 280 REMARK 465 ALA B 281 REMARK 465 GLY B 282 REMARK 465 ALA B 283 REMARK 465 THR B 284 REMARK 465 GLU B 285 REMARK 465 ARG B 286 REMARK 465 ARG B 287 REMARK 465 MET C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 MET C -6 REMARK 465 PRO C -5 REMARK 465 LEU C -4 REMARK 465 GLU C -3 REMARK 465 PRO C -2 REMARK 465 HIS C -1 REMARK 465 PHE C 0 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 ASP C 3 REMARK 465 PHE C 4 REMARK 465 LEU C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 280 REMARK 465 ALA C 281 REMARK 465 GLY C 282 REMARK 465 ALA C 283 REMARK 465 THR C 284 REMARK 465 GLU C 285 REMARK 465 ARG C 286 REMARK 465 ARG C 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 TYR A 197 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 70.40 57.24 REMARK 500 ALA A 79 67.78 61.18 REMARK 500 HIS A 105 -157.67 -92.83 REMARK 500 HIS A 194 57.73 -91.08 REMARK 500 LYS A 199 -0.45 74.32 REMARK 500 SER A 213 -3.99 73.68 REMARK 500 MET A 255 -5.45 73.91 REMARK 500 THR B 77 160.56 179.44 REMARK 500 HIS B 105 -62.01 -94.72 REMARK 500 MET B 255 -3.77 69.60 REMARK 500 TYR C 41 32.17 -94.06 REMARK 500 HIS C 105 -158.21 -88.13 REMARK 500 LEU C 109 70.01 59.04 REMARK 500 MET C 255 -3.54 69.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8VJN RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF ENCD REMARK 900 RELATED ID: EMD-43290 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF MYXOCOCCUS XANTHUS ENCA ENCAPSULIN SHELL REMARK 900 LOADED WITH ENCD CARGO DBREF 8VJO A -6 287 UNP Q1D6H4 Q1D6H4_MYXXD 1 294 DBREF 8VJO F 99 107 UNP Q1D9P3 ENCD_MYXXD 99 107 DBREF 8VJO B -6 287 UNP Q1D6H4 Q1D6H4_MYXXD 1 294 DBREF 8VJO G 99 107 UNP Q1D9P3 ENCD_MYXXD 99 107 DBREF 8VJO C -6 287 UNP Q1D6H4 Q1D6H4_MYXXD 1 294 DBREF 8VJO H 99 107 UNP Q1D9P3 ENCD_MYXXD 99 107 SEQADV 8VJO MET A -13 UNP Q1D6H4 INITIATING METHIONINE SEQADV 8VJO HIS A -12 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS A -11 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS A -10 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS A -9 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS A -8 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS A -7 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO MET B -13 UNP Q1D6H4 INITIATING METHIONINE SEQADV 8VJO HIS B -12 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS B -11 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS B -10 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS B -9 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS B -8 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS B -7 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO MET C -13 UNP Q1D6H4 INITIATING METHIONINE SEQADV 8VJO HIS C -12 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS C -11 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS C -10 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS C -9 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS C -8 UNP Q1D6H4 EXPRESSION TAG SEQADV 8VJO HIS C -7 UNP Q1D6H4 EXPRESSION TAG SEQRES 1 A 301 MET HIS HIS HIS HIS HIS HIS MET PRO LEU GLU PRO HIS SEQRES 2 A 301 PHE MET PRO ASP PHE LEU GLY HIS ALA GLU ASN PRO LEU SEQRES 3 A 301 ARG GLU GLU GLU TRP ALA ARG LEU ASN GLU THR VAL ILE SEQRES 4 A 301 GLN VAL ALA ARG ARG SER LEU VAL GLY ARG ARG ILE LEU SEQRES 5 A 301 ASP ILE TYR GLY PRO LEU GLY ALA GLY VAL GLN THR VAL SEQRES 6 A 301 PRO TYR ASP GLU PHE GLN GLY VAL SER PRO GLY ALA VAL SEQRES 7 A 301 ASP ILE VAL GLY GLU GLN GLU THR ALA MET VAL PHE THR SEQRES 8 A 301 ASP ALA ARG LYS PHE LYS THR ILE PRO ILE ILE TYR LYS SEQRES 9 A 301 ASP PHE LEU LEU HIS TRP ARG ASP ILE GLU ALA ALA ARG SEQRES 10 A 301 THR HIS ASN MET PRO LEU ASP VAL SER ALA ALA ALA GLY SEQRES 11 A 301 ALA ALA ALA LEU CYS ALA GLN GLN GLU ASP GLU LEU ILE SEQRES 12 A 301 PHE TYR GLY ASP ALA ARG LEU GLY TYR GLU GLY LEU MET SEQRES 13 A 301 THR ALA ASN GLY ARG LEU THR VAL PRO LEU GLY ASP TRP SEQRES 14 A 301 THR SER PRO GLY GLY GLY PHE GLN ALA ILE VAL GLU ALA SEQRES 15 A 301 THR ARG LYS LEU ASN GLU GLN GLY HIS PHE GLY PRO TYR SEQRES 16 A 301 ALA VAL VAL LEU SER PRO ARG LEU TYR SER GLN LEU HIS SEQRES 17 A 301 ARG ILE TYR GLU LYS THR GLY VAL LEU GLU ILE GLU THR SEQRES 18 A 301 ILE ARG GLN LEU ALA SER ASP GLY VAL TYR GLN SER ASN SEQRES 19 A 301 ARG LEU ARG GLY GLU SER GLY VAL VAL VAL SER THR GLY SEQRES 20 A 301 ARG GLU ASN MET ASP LEU ALA VAL SER MET ASP MET VAL SEQRES 21 A 301 ALA ALA TYR LEU GLY ALA SER ARG MET ASN HIS PRO PHE SEQRES 22 A 301 ARG VAL LEU GLU ALA LEU LEU LEU ARG ILE LYS HIS PRO SEQRES 23 A 301 ASP ALA ILE CYS THR LEU GLU GLY ALA GLY ALA THR GLU SEQRES 24 A 301 ARG ARG SEQRES 1 F 9 GLY LEU THR VAL GLY SER LEU ARG GLY SEQRES 1 B 301 MET HIS HIS HIS HIS HIS HIS MET PRO LEU GLU PRO HIS SEQRES 2 B 301 PHE MET PRO ASP PHE LEU GLY HIS ALA GLU ASN PRO LEU SEQRES 3 B 301 ARG GLU GLU GLU TRP ALA ARG LEU ASN GLU THR VAL ILE SEQRES 4 B 301 GLN VAL ALA ARG ARG SER LEU VAL GLY ARG ARG ILE LEU SEQRES 5 B 301 ASP ILE TYR GLY PRO LEU GLY ALA GLY VAL GLN THR VAL SEQRES 6 B 301 PRO TYR ASP GLU PHE GLN GLY VAL SER PRO GLY ALA VAL SEQRES 7 B 301 ASP ILE VAL GLY GLU GLN GLU THR ALA MET VAL PHE THR SEQRES 8 B 301 ASP ALA ARG LYS PHE LYS THR ILE PRO ILE ILE TYR LYS SEQRES 9 B 301 ASP PHE LEU LEU HIS TRP ARG ASP ILE GLU ALA ALA ARG SEQRES 10 B 301 THR HIS ASN MET PRO LEU ASP VAL SER ALA ALA ALA GLY SEQRES 11 B 301 ALA ALA ALA LEU CYS ALA GLN GLN GLU ASP GLU LEU ILE SEQRES 12 B 301 PHE TYR GLY ASP ALA ARG LEU GLY TYR GLU GLY LEU MET SEQRES 13 B 301 THR ALA ASN GLY ARG LEU THR VAL PRO LEU GLY ASP TRP SEQRES 14 B 301 THR SER PRO GLY GLY GLY PHE GLN ALA ILE VAL GLU ALA SEQRES 15 B 301 THR ARG LYS LEU ASN GLU GLN GLY HIS PHE GLY PRO TYR SEQRES 16 B 301 ALA VAL VAL LEU SER PRO ARG LEU TYR SER GLN LEU HIS SEQRES 17 B 301 ARG ILE TYR GLU LYS THR GLY VAL LEU GLU ILE GLU THR SEQRES 18 B 301 ILE ARG GLN LEU ALA SER ASP GLY VAL TYR GLN SER ASN SEQRES 19 B 301 ARG LEU ARG GLY GLU SER GLY VAL VAL VAL SER THR GLY SEQRES 20 B 301 ARG GLU ASN MET ASP LEU ALA VAL SER MET ASP MET VAL SEQRES 21 B 301 ALA ALA TYR LEU GLY ALA SER ARG MET ASN HIS PRO PHE SEQRES 22 B 301 ARG VAL LEU GLU ALA LEU LEU LEU ARG ILE LYS HIS PRO SEQRES 23 B 301 ASP ALA ILE CYS THR LEU GLU GLY ALA GLY ALA THR GLU SEQRES 24 B 301 ARG ARG SEQRES 1 G 9 GLY LEU THR VAL GLY SER LEU ARG GLY SEQRES 1 C 301 MET HIS HIS HIS HIS HIS HIS MET PRO LEU GLU PRO HIS SEQRES 2 C 301 PHE MET PRO ASP PHE LEU GLY HIS ALA GLU ASN PRO LEU SEQRES 3 C 301 ARG GLU GLU GLU TRP ALA ARG LEU ASN GLU THR VAL ILE SEQRES 4 C 301 GLN VAL ALA ARG ARG SER LEU VAL GLY ARG ARG ILE LEU SEQRES 5 C 301 ASP ILE TYR GLY PRO LEU GLY ALA GLY VAL GLN THR VAL SEQRES 6 C 301 PRO TYR ASP GLU PHE GLN GLY VAL SER PRO GLY ALA VAL SEQRES 7 C 301 ASP ILE VAL GLY GLU GLN GLU THR ALA MET VAL PHE THR SEQRES 8 C 301 ASP ALA ARG LYS PHE LYS THR ILE PRO ILE ILE TYR LYS SEQRES 9 C 301 ASP PHE LEU LEU HIS TRP ARG ASP ILE GLU ALA ALA ARG SEQRES 10 C 301 THR HIS ASN MET PRO LEU ASP VAL SER ALA ALA ALA GLY SEQRES 11 C 301 ALA ALA ALA LEU CYS ALA GLN GLN GLU ASP GLU LEU ILE SEQRES 12 C 301 PHE TYR GLY ASP ALA ARG LEU GLY TYR GLU GLY LEU MET SEQRES 13 C 301 THR ALA ASN GLY ARG LEU THR VAL PRO LEU GLY ASP TRP SEQRES 14 C 301 THR SER PRO GLY GLY GLY PHE GLN ALA ILE VAL GLU ALA SEQRES 15 C 301 THR ARG LYS LEU ASN GLU GLN GLY HIS PHE GLY PRO TYR SEQRES 16 C 301 ALA VAL VAL LEU SER PRO ARG LEU TYR SER GLN LEU HIS SEQRES 17 C 301 ARG ILE TYR GLU LYS THR GLY VAL LEU GLU ILE GLU THR SEQRES 18 C 301 ILE ARG GLN LEU ALA SER ASP GLY VAL TYR GLN SER ASN SEQRES 19 C 301 ARG LEU ARG GLY GLU SER GLY VAL VAL VAL SER THR GLY SEQRES 20 C 301 ARG GLU ASN MET ASP LEU ALA VAL SER MET ASP MET VAL SEQRES 21 C 301 ALA ALA TYR LEU GLY ALA SER ARG MET ASN HIS PRO PHE SEQRES 22 C 301 ARG VAL LEU GLU ALA LEU LEU LEU ARG ILE LYS HIS PRO SEQRES 23 C 301 ASP ALA ILE CYS THR LEU GLU GLY ALA GLY ALA THR GLU SEQRES 24 C 301 ARG ARG SEQRES 1 H 9 GLY LEU THR VAL GLY SER LEU ARG GLY HELIX 1 AA1 ARG A 13 LEU A 32 1 20 HELIX 2 AA2 VAL A 33 LEU A 38 1 6 HELIX 3 AA3 HIS A 95 THR A 104 1 10 HELIX 4 AA4 VAL A 111 GLY A 132 1 22 HELIX 5 AA5 GLY A 159 GLN A 175 1 17 HELIX 6 AA6 SER A 186 LEU A 193 1 8 HELIX 7 AA7 ARG A 195 LYS A 199 5 5 HELIX 8 AA8 LEU A 203 ALA A 212 1 10 HELIX 9 AA9 HIS A 271 ASP A 273 5 3 HELIX 10 AB1 PRO B 2 GLY B 6 5 5 HELIX 11 AB2 ARG B 13 LEU B 32 1 20 HELIX 12 AB3 VAL B 33 ILE B 37 5 5 HELIX 13 AB4 HIS B 95 HIS B 105 1 11 HELIX 14 AB5 VAL B 111 TYR B 131 1 21 HELIX 15 AB6 GLY B 159 GLN B 175 1 17 HELIX 16 AB7 SER B 186 LEU B 193 1 8 HELIX 17 AB8 LEU B 203 ALA B 212 1 10 HELIX 18 AB9 HIS B 271 ASP B 273 5 3 HELIX 19 AC1 ARG C 13 LEU C 32 1 20 HELIX 20 AC2 VAL C 33 ILE C 37 5 5 HELIX 21 AC3 HIS C 95 HIS C 105 1 11 HELIX 22 AC4 VAL C 111 TYR C 131 1 21 HELIX 23 AC5 GLY C 160 GLN C 175 1 16 HELIX 24 AC6 SER C 186 LEU C 193 1 8 HELIX 25 AC7 LEU C 203 ALA C 212 1 10 SHEET 1 AA1 4 ASP A 39 ILE A 40 0 SHEET 2 AA1 4 MET A 237 TYR A 249 1 O LEU A 239 N ASP A 39 SHEET 3 AA1 4 HIS A 257 ILE A 269 -1 O ALA A 264 N MET A 243 SHEET 4 AA1 4 ILE A 87 LEU A 94 -1 N ILE A 88 O GLU A 263 SHEET 1 AA2 2 THR A 50 TYR A 53 0 SHEET 2 AA2 2 LYS A 81 THR A 84 -1 O LYS A 81 N TYR A 53 SHEET 1 AA3 4 SER A 213 GLN A 218 0 SHEET 2 AA3 4 TYR A 181 LEU A 185 1 N LEU A 185 O TYR A 217 SHEET 3 AA3 4 GLY A 227 SER A 231 -1 O VAL A 228 N VAL A 184 SHEET 4 AA3 4 ILE A 275 THR A 277 -1 O CYS A 276 N VAL A 229 SHEET 1 AA4 4 ILE B 40 TYR B 41 0 SHEET 2 AA4 4 MET B 237 TYR B 249 1 O VAL B 241 N TYR B 41 SHEET 3 AA4 4 HIS B 257 ILE B 269 -1 O ALA B 264 N MET B 243 SHEET 4 AA4 4 ILE B 87 LEU B 94 -1 N ILE B 88 O GLU B 263 SHEET 1 AA5 2 THR B 50 TYR B 53 0 SHEET 2 AA5 2 LYS B 81 THR B 84 -1 O LYS B 81 N TYR B 53 SHEET 1 AA6 5 LEU B 148 VAL B 150 0 SHEET 2 AA6 5 ILE B 275 LEU B 278 1 O ILE B 275 N LEU B 148 SHEET 3 AA6 5 GLY B 227 SER B 231 -1 N VAL B 229 O CYS B 276 SHEET 4 AA6 5 TYR B 181 LEU B 185 -1 N VAL B 184 O VAL B 228 SHEET 5 AA6 5 VAL B 216 GLN B 218 1 O TYR B 217 N VAL B 183 SHEET 1 AA7 4 ILE C 40 PRO C 43 0 SHEET 2 AA7 4 MET C 237 TYR C 249 1 O LEU C 239 N TYR C 41 SHEET 3 AA7 4 HIS C 257 ILE C 269 -1 O ARG C 260 N ALA C 248 SHEET 4 AA7 4 ILE C 87 LEU C 94 -1 N ILE C 88 O GLU C 263 SHEET 1 AA8 2 THR C 50 PRO C 52 0 SHEET 2 AA8 2 PHE C 82 THR C 84 -1 O LYS C 83 N VAL C 51 SHEET 1 AA9 5 LEU C 148 VAL C 150 0 SHEET 2 AA9 5 ILE C 275 LEU C 278 1 O THR C 277 N LEU C 148 SHEET 3 AA9 5 GLY C 227 SER C 231 -1 N VAL C 229 O CYS C 276 SHEET 4 AA9 5 TYR C 181 LEU C 185 -1 N VAL C 184 O VAL C 228 SHEET 5 AA9 5 VAL C 216 GLN C 218 1 O TYR C 217 N VAL C 183 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000