HEADER TRANSFERASE/SIGNALING PROTEIN 13-JAN-24 8VMF TITLE CRYSTAL STRUCTURE OF A TRANSITION-STATE MIMIC OF THE GSK-3/AXIN TITLE 2 COMPLEX BOUND TO A BETA-CATENIN S45D PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GSK-3 BETA,SERINE/THREONINE-PROTEIN KINASE GSK3B; COMPND 5 EC: 2.7.11.26,2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AXIN-1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: AXIS INHIBITION PROTEIN 1,PROTEIN FUSED; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: CATENIN BETA-1; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: BETA-CATENIN; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GSK3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: AXIN1, AXIN, FU; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: CTNNB1, CTNNB, OK/SW-CL.35, PRO2286; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GSK-3, KINASE, TRANSFERASE-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.ENOS,M.GAVAGAN,N.JAMESON,J.G.ZALATAN,W.I.WEIS REVDAT 1 28-AUG-24 8VMF 0 JRNL AUTH M.D.ENOS,M.GAVAGAN,N.JAMESON,J.G.ZALATAN,W.I.WEIS JRNL TITL STRUCTURAL AND FUNCTIONAL EFFECTS OF PHOSPHOPRIMING AND JRNL TITL 2 SCAFFOLDING IN THE KINASE GSK3BETA JRNL REF SCI.SIGNAL. 2024 JRNL REFN ESSN 1937-9145 JRNL DOI 10.1126/SCISIGNAL.ADO0881 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 19434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0700 - 4.7800 0.90 2708 130 0.1746 0.2164 REMARK 3 2 4.7800 - 3.8000 0.94 2637 147 0.1539 0.1893 REMARK 3 3 3.8000 - 3.3200 0.96 2652 134 0.2042 0.2921 REMARK 3 4 3.3200 - 3.0100 0.97 2653 113 0.2432 0.2548 REMARK 3 5 3.0100 - 2.8000 0.98 2650 139 0.2949 0.3312 REMARK 3 6 2.8000 - 2.6300 0.98 2630 142 0.3207 0.3839 REMARK 3 7 2.6300 - 2.5000 0.96 2565 134 0.3458 0.3691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.378 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.925 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3167 REMARK 3 ANGLE : 0.539 4319 REMARK 3 CHIRALITY : 0.042 488 REMARK 3 PLANARITY : 0.005 554 REMARK 3 DIHEDRAL : 11.305 1165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 27:136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.166 -44.533 -1.520 REMARK 3 T TENSOR REMARK 3 T11: 0.5555 T22: 0.7320 REMARK 3 T33: 0.5560 T12: -0.1611 REMARK 3 T13: -0.0676 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 6.8155 L22: 6.1752 REMARK 3 L33: 3.5007 L12: -0.4524 REMARK 3 L13: 1.0096 L23: -2.7142 REMARK 3 S TENSOR REMARK 3 S11: -0.1484 S12: 0.0432 S13: -0.8557 REMARK 3 S21: 0.0129 S22: 0.1002 S23: -0.5381 REMARK 3 S31: 0.1862 S32: 0.0982 S33: -0.0062 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 137:384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.500 -29.780 -21.403 REMARK 3 T TENSOR REMARK 3 T11: 0.4534 T22: 0.4121 REMARK 3 T33: 0.4544 T12: -0.0346 REMARK 3 T13: 0.0664 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.4175 L22: 2.5454 REMARK 3 L33: 4.5869 L12: 0.1921 REMARK 3 L13: -0.2899 L23: 0.2648 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: -0.1388 S13: 0.3721 REMARK 3 S21: -0.0089 S22: 0.0552 S23: 0.0019 REMARK 3 S31: -0.4858 S32: 0.2017 S33: -0.0732 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 383:401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.800 -43.993 -44.203 REMARK 3 T TENSOR REMARK 3 T11: 0.8577 T22: 0.4681 REMARK 3 T33: 0.4763 T12: -0.1406 REMARK 3 T13: 0.0430 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 2.0037 L22: 8.9196 REMARK 3 L33: 6.7114 L12: -2.7287 REMARK 3 L13: -0.6127 L23: 1.7389 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: 0.6620 S13: -0.1766 REMARK 3 S21: -0.9901 S22: 0.0332 S23: 0.0648 REMARK 3 S31: 0.7245 S32: -0.1484 S33: -0.0726 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN C AND RESID 43:47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.878 -44.755 -22.585 REMARK 3 T TENSOR REMARK 3 T11: 0.8442 T22: 1.1807 REMARK 3 T33: 1.1091 T12: 0.0884 REMARK 3 T13: 0.2793 T23: 0.3946 REMARK 3 L TENSOR REMARK 3 L11: 0.5752 L22: 0.3439 REMARK 3 L33: 1.8247 L12: -0.2078 REMARK 3 L13: 0.9162 L23: -0.5302 REMARK 3 S TENSOR REMARK 3 S11: -0.2156 S12: -1.4618 S13: -1.9201 REMARK 3 S21: 0.8361 S22: 0.8917 S23: 1.1429 REMARK 3 S31: 0.7011 S32: -0.1759 S33: -0.4189 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 504:504 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.589 -43.560 -8.552 REMARK 3 T TENSOR REMARK 3 T11: 1.2615 T22: 1.5248 REMARK 3 T33: 0.7229 T12: 0.2664 REMARK 3 T13: -0.0883 T23: -0.1345 REMARK 3 L TENSOR REMARK 3 L11: 5.3881 L22: 3.5276 REMARK 3 L33: 3.4529 L12: 0.2886 REMARK 3 L13: -1.2947 L23: 0.4857 REMARK 3 S TENSOR REMARK 3 S11: -0.2019 S12: 0.6851 S13: -0.7994 REMARK 3 S21: -0.4678 S22: 0.0517 S23: -0.3523 REMARK 3 S31: 0.2968 S32: -0.0219 S33: 0.1584 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000259658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98401 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.9.33, AIMLESS 0.5.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.23300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 2.73300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: PDB ENTRY 4NM7 REMARK 200 REMARK 200 REMARK: FLAT PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG35000, 20 MM TRIS, PH 7.5, 300 REMARK 280 MM SODIUM CHLORIDE, 5% GLYCEROL, 10 MM MAGNESIUM CHLORIDE, 5 MM REMARK 280 DTT, 200 UM ADP, 200 UM ALUMINUM NITRATE, 1.2 MM SODIUM FLUORIDE, REMARK 280 MICRODIALYSIS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.45133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 186.90267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.17700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 233.62833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.72567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.45133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 186.90267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 233.62833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.17700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.72567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 26 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 465 ILE B 381 REMARK 465 LEU B 382 REMARK 465 THR B 402 REMARK 465 MET C 34 REMARK 465 ILE C 35 REMARK 465 HIS C 36 REMARK 465 SER C 37 REMARK 465 GLY C 38 REMARK 465 ALA C 39 REMARK 465 THR C 40 REMARK 465 THR C 41 REMARK 465 THR C 42 REMARK 465 GLY C 48 REMARK 465 LYS C 49 REMARK 465 GLY C 50 REMARK 465 ASN C 51 REMARK 465 PRO C 52 REMARK 465 GLU C 53 REMARK 465 GLU C 54 REMARK 465 GLU C 55 REMARK 465 ASP C 56 REMARK 465 VAL C 57 REMARK 465 ASP C 58 REMARK 465 THR C 59 REMARK 465 SER C 60 REMARK 465 GLN C 61 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 SER A 29 OG REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 VAL A 126 CG1 CG2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 LYS B 387 CG CD CE NZ REMARK 470 ARG B 401 CG CD NE CZ NH1 NH2 REMARK 470 SER C 47 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 62 -61.85 -109.33 REMARK 500 ASP A 181 33.39 -143.46 REMARK 500 TYR A 221 -8.38 78.98 REMARK 500 PRO A 357 -179.28 -66.91 REMARK 500 ASN A 361 58.84 -92.28 REMARK 500 ASN A 370 76.96 -156.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 186 OD1 REMARK 620 2 ASP A 200 OD2 65.3 REMARK 620 3 ADP A 504 O1B 138.5 78.5 REMARK 620 4 HOH A 703 O 122.9 138.0 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD1 REMARK 620 2 ADP A 504 O3B 79.5 REMARK 620 3 HOH A 647 O 68.4 121.8 REMARK 620 N 1 2 DBREF 8VMF A 26 383 UNP Q9WV60 GSK3B_MOUSE 26 383 DBREF 8VMF B 383 402 UNP O35625 AXIN1_MOUSE 383 402 DBREF 8VMF C 35 61 UNP P35222 CTNB1_HUMAN 35 61 SEQADV 8VMF HIS A 384 UNP Q9WV60 EXPRESSION TAG SEQADV 8VMF HIS A 385 UNP Q9WV60 EXPRESSION TAG SEQADV 8VMF HIS A 386 UNP Q9WV60 EXPRESSION TAG SEQADV 8VMF HIS A 387 UNP Q9WV60 EXPRESSION TAG SEQADV 8VMF HIS A 388 UNP Q9WV60 EXPRESSION TAG SEQADV 8VMF HIS A 389 UNP Q9WV60 EXPRESSION TAG SEQADV 8VMF GLY B 379 UNP O35625 EXPRESSION TAG SEQADV 8VMF GLY B 380 UNP O35625 EXPRESSION TAG SEQADV 8VMF ILE B 381 UNP O35625 EXPRESSION TAG SEQADV 8VMF LEU B 382 UNP O35625 EXPRESSION TAG SEQADV 8VMF MET C 34 UNP P35222 INITIATING METHIONINE SEQADV 8VMF ASP C 45 UNP P35222 SER 45 ENGINEERED MUTATION SEQRES 1 A 364 MET LYS VAL SER ARG ASP LYS ASP GLY SER LYS VAL THR SEQRES 2 A 364 THR VAL VAL ALA THR PRO GLY GLN GLY PRO ASP ARG PRO SEQRES 3 A 364 GLN GLU VAL SER TYR THR ASP THR LYS VAL ILE GLY ASN SEQRES 4 A 364 GLY SER PHE GLY VAL VAL TYR GLN ALA LYS LEU CYS ASP SEQRES 5 A 364 SER GLY GLU LEU VAL ALA ILE LYS LYS VAL LEU GLN ASP SEQRES 6 A 364 LYS ARG PHE LYS ASN ARG GLU LEU GLN ILE MET ARG LYS SEQRES 7 A 364 LEU ASP HIS CYS ASN ILE VAL ARG LEU ARG TYR PHE PHE SEQRES 8 A 364 TYR SER SER GLY GLU LYS LYS ASP GLU VAL TYR LEU ASN SEQRES 9 A 364 LEU VAL LEU ASP TYR VAL PRO GLU THR VAL TYR ARG VAL SEQRES 10 A 364 ALA ARG HIS TYR SER ARG ALA LYS GLN THR LEU PRO VAL SEQRES 11 A 364 ILE TYR VAL LYS LEU TYR MET TYR GLN LEU PHE ARG SER SEQRES 12 A 364 LEU ALA TYR ILE HIS SER PHE GLY ILE CYS HIS ARG ASP SEQRES 13 A 364 ILE LYS PRO GLN ASN LEU LEU LEU ASP PRO ASP THR ALA SEQRES 14 A 364 VAL LEU LYS LEU CYS ASP PHE GLY SER ALA LYS GLN LEU SEQRES 15 A 364 VAL ARG GLY GLU PRO ASN VAL SER TYR ILE CYS SER ARG SEQRES 16 A 364 TYR TYR ARG ALA PRO GLU LEU ILE PHE GLY ALA THR ASP SEQRES 17 A 364 TYR THR SER SER ILE ASP VAL TRP SER ALA GLY CYS VAL SEQRES 18 A 364 LEU ALA GLU LEU LEU LEU GLY GLN PRO ILE PHE PRO GLY SEQRES 19 A 364 ASP SER GLY VAL ASP GLN LEU VAL GLU ILE ILE LYS VAL SEQRES 20 A 364 LEU GLY THR PRO THR ARG GLU GLN ILE ARG GLU MET ASN SEQRES 21 A 364 PRO ASN TYR THR GLU PHE LYS PHE PRO GLN ILE LYS ALA SEQRES 22 A 364 HIS PRO TRP THR LYS VAL PHE ARG PRO ARG THR PRO PRO SEQRES 23 A 364 GLU ALA ILE ALA LEU CYS SER ARG LEU LEU GLU TYR THR SEQRES 24 A 364 PRO THR ALA ARG LEU THR PRO LEU GLU ALA CYS ALA HIS SEQRES 25 A 364 SER PHE PHE ASP GLU LEU ARG ASP PRO ASN VAL LYS LEU SEQRES 26 A 364 PRO ASN GLY ARG ASP THR PRO ALA LEU PHE ASN PHE THR SEQRES 27 A 364 THR GLN GLU LEU SER SER ASN PRO PRO LEU ALA THR ILE SEQRES 28 A 364 LEU ILE PRO PRO HIS ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 24 GLY GLY ILE LEU VAL GLU PRO GLN LYS PHE ALA GLU GLU SEQRES 2 B 24 LEU ILE HIS ARG LEU GLU ALA VAL GLN ARG THR SEQRES 1 C 28 MET ILE HIS SER GLY ALA THR THR THR ALA PRO ASP LEU SEQRES 2 C 28 SER GLY LYS GLY ASN PRO GLU GLU GLU ASP VAL ASP THR SEQRES 3 C 28 SER GLN HET MG A 501 1 HET MG A 502 1 HET AF3 A 503 4 HET ADP A 504 27 HET GOL A 505 14 HET GOL A 506 14 HET GOL A 507 14 HET CL A 508 1 HETNAM MG MAGNESIUM ION HETNAM AF3 ALUMINUM FLUORIDE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 MG 2(MG 2+) FORMUL 6 AF3 AL F3 FORMUL 7 ADP C10 H15 N5 O10 P2 FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 CL CL 1- FORMUL 12 HOH *131(H2 O) HELIX 1 AA1 ARG A 96 LYS A 103 1 8 HELIX 2 AA2 VAL A 139 ALA A 149 1 11 HELIX 3 AA3 PRO A 154 PHE A 175 1 22 HELIX 4 AA4 LYS A 183 GLN A 185 5 3 HELIX 5 AA5 ALA A 224 PHE A 229 1 6 HELIX 6 AA6 SER A 236 GLY A 253 1 18 HELIX 7 AA7 SER A 261 GLY A 274 1 14 HELIX 8 AA8 THR A 277 ASN A 285 1 9 HELIX 9 AA9 PRO A 286 THR A 289 5 4 HELIX 10 AB1 PRO A 300 PHE A 305 1 6 HELIX 11 AB2 PRO A 310 LEU A 321 1 12 HELIX 12 AB3 THR A 324 ARG A 328 5 5 HELIX 13 AB4 THR A 330 ALA A 336 1 7 HELIX 14 AB5 HIS A 337 ASP A 341 5 5 HELIX 15 AB6 ASN A 370 PRO A 372 5 3 HELIX 16 AB7 LEU A 373 ILE A 378 1 6 HELIX 17 AB8 PRO A 379 ARG A 383 5 5 HELIX 18 AB9 GLU B 384 GLN B 400 1 17 SHEET 1 AA1 8 VAL A 28 SER A 29 0 SHEET 2 AA1 8 VAL A 37 PRO A 44 -1 O VAL A 37 N SER A 29 SHEET 3 AA1 8 LEU A 112 SER A 119 -1 O PHE A 115 N THR A 43 SHEET 4 AA1 8 VAL A 126 ASP A 133 -1 O ASN A 129 N PHE A 116 SHEET 5 AA1 8 LEU A 81 VAL A 87 -1 N ALA A 83 O LEU A 132 SHEET 6 AA1 8 VAL A 69 LEU A 75 -1 N TYR A 71 O ILE A 84 SHEET 7 AA1 8 GLN A 52 ASN A 64 -1 N LYS A 60 O GLN A 72 SHEET 8 AA1 8 VAL A 37 PRO A 44 -1 N VAL A 40 O VAL A 54 SHEET 1 AA2 3 GLU A 137 THR A 138 0 SHEET 2 AA2 3 LEU A 187 ASP A 190 -1 O LEU A 189 N GLU A 137 SHEET 3 AA2 3 VAL A 195 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 AA3 2 ILE A 177 CYS A 178 0 SHEET 2 AA3 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 LINK OD1 ASN A 186 MG MG A 501 1555 1555 2.54 LINK OD2 ASP A 200 MG MG A 501 1555 1555 2.80 LINK OD1 ASP A 200 MG MG A 502 1555 1555 2.63 LINK MG MG A 501 O1B ADP A 504 1555 1555 2.52 LINK MG MG A 501 O HOH A 703 1555 1555 2.91 LINK MG MG A 502 O3B ADP A 504 1555 1555 2.27 LINK MG MG A 502 O HOH A 647 1555 1555 2.61 CRYST1 82.251 82.251 280.354 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012158 0.007019 0.000000 0.00000 SCALE2 0.000000 0.014039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003567 0.00000